Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 0.0e+00 1458.0 744 100.0
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 3.0e-286 988.4 755 70.7
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 1.8e-174 617.1 663 52.5
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 1.4e-171 607.4 663 52.3
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 1.9e-168 597.0 697 50.9
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 4.7e-167 592.4 774 48.1
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.1e-166 591.3 764 47.9
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 1.2e-165 587.8 784 47.6
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 7.6e-165 585.1 696 48.7
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 2.9e-164 583.2 664 51.5
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 3.8e-164 582.8 786 47.2
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 1.1e-163 581.3 742 48.0
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 1.4e-163 580.9 797 47.1
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 1.7e-161 573.9 801 47.2
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 2.3e-161 573.5 739 46.7
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 2.3e-161 573.5 648 50.0
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 3.9e-161 572.8 635 49.8
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 6.6e-161 572.0 733 47.1
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 8.7e-161 571.6 733 46.9
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.5e-160 570.9 818 45.2
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 1.5e-160 570.9 618 51.9
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 1.9e-160 570.5 635 50.4
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 1.9e-160 570.5 633 50.6
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 2.5e-160 570.1 729 47.2
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 3.3e-160 569.7 744 46.8
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 7.3e-160 568.5 758 46.3
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 7.3e-160 568.5 661 50.5
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 9.6e-160 568.2 770 47.4
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 1.3e-159 567.8 766 47.0
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 2.1e-159 567.0 756 46.7
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 2.8e-159 566.6 739 47.1
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 3.6e-159 566.2 776 45.4
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 3.1e-158 563.1 726 46.6
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 4.0e-158 562.8 769 46.2
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 5.3e-158 562.4 638 51.6
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 6.9e-158 562.0 808 45.8
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 9.0e-158 561.6 648 52.2
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 1.2e-157 561.2 655 49.2
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 2.0e-157 560.5 751 47.7
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 7.6e-157 558.5 644 49.4
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 9.9e-157 558.1 655 50.2
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 9.9e-157 558.1 627 52.3
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 8.4e-156 555.1 826 44.3
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 1.1e-155 554.7 602 54.0
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 1.4e-155 554.3 619 51.4
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 1.9e-155 553.9 779 44.5
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 5.4e-155 552.4 671 49.8
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 7.1e-155 552.0 766 45.6
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 9.3e-155 551.6 789 45.6
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 9.3e-155 551.6 639 50.9
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 1.6e-154 550.8 624 50.5
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 2.7e-154 550.1 796 45.4
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 2.7e-154 550.1 764 46.3
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 4.6e-154 549.3 629 50.6
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 4.6e-154 549.3 775 45.5
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 7.9e-154 548.5 766 46.1
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 1.3e-153 547.7 637 50.7
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 1.7e-153 547.4 681 47.9
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 6.6e-153 545.4 696 48.7
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 1.1e-152 544.7 663 49.6
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.9e-152 543.9 649 48.8
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 1.1e-150 538.1 696 48.0
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 1.4e-150 537.7 750 45.6
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 1.8e-150 537.3 750 44.9
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 4.0e-150 536.2 740 45.1
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 2.6e-149 533.5 731 45.6
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 4.5e-149 532.7 750 44.5
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 5.4e-147 525.8 624 50.0
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 1.2e-146 524.6 795 44.7
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 4.6e-146 522.7 721 45.6
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 4.6e-146 522.7 781 44.2
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 7.9e-146 521.9 624 47.6
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 1.3e-145 521.2 625 48.8
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 1.3e-145 521.2 770 44.5
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 6.7e-145 518.8 752 46.0
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 1.5e-144 517.7 657 47.2
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 7.4e-144 515.4 606 49.0
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 1.6e-143 514.2 635 47.7
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 2.8e-143 513.5 768 44.1
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 3.7e-143 513.1 607 49.6
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 1.4e-142 511.1 646 47.7
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 1.8e-142 510.8 764 43.5
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 1.7e-140 504.2 625 47.7
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 2.1e-138 497.3 794 42.3
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 1.8e-137 494.2 790 42.0
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 6.7e-137 492.3 684 45.5
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 1.5e-136 491.1 467 56.1
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 4.3e-136 489.6 778 41.9
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 4.8e-135 486.1 774 41.7
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 5.3e-134 482.6 781 41.9
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 1.0e-129 468.4 826 40.7
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 2.5e-128 463.8 565 47.6
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 1.2e-122 444.9 686 41.7
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 3.8e-108 396.7 718 37.7
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 1.5e-107 394.8 629 39.9
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 3.3e-104 383.6 514 46.1
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 4.4e-104 383.3 416 53.1
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 9.1e-102 375.6 641 38.8
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.6e-101 374.8 461 46.4
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 5.4e-94 349.7 494 44.5
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 7.7e-93 345.9 637 37.7
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 5.4e-78 296.6 413 41.6
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 7.3e-75 286.2 794 30.0
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 5.6e-67 260.0 598 35.3
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 8.9e-65 252.7 453 40.8
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 3.9e-60 237.3 644 31.7
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 6.4e-55 219.9 284 47.9
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 3.0e-44 184.5 234 46.6
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 2.6e-40 171.4 232 47.4
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 5.1e-36 157.1 436 33.0
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 1.4e-33 149.1 325 33.5
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 6.0e-29 133.7 621 22.4
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 7.9e-29 133.3 105 65.7
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 2.5e-27 128.3 194 41.8
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 2.5e-27 128.3 776 22.8
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 7.9e-21 106.7 129 51.2
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 3.1e-17 94.7 191 38.7
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 2.2e-15 88.6 171 32.7
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 5.0e-15 87.4 120 42.5
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 1.2e-13 82.8 145 41.4
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 5.1e-12 77.4 104 45.2
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 3.3e-11 74.7 118 46.6
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 1.4e-09 69.3 93 46.2
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 1.8e-09 68.9 95 48.4
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 1.7e-07 62.4 78 51.3
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 3.2e-06 58.2 102 45.1
VMungo1080G0279 Vigna mungo HOM05D000463 ORTHO05D001294 5.5e-06 57.4 151 28.5


User provided reference genes

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