Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 2.0e-297 1025.0 517 100.0
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.6e-97 360.9 454 46.7
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 4.7e-97 359.4 461 46.0
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 1.0e-96 358.2 451 45.9
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 5.7e-95 352.4 456 45.6
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 1.1e-93 348.2 508 40.4
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 1.6e-92 344.4 457 43.3
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 4.5e-92 342.8 449 44.5
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 1.5e-90 337.8 448 42.4
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 2.5e-90 337.0 526 38.0
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 1.6e-89 334.3 453 43.0
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 2.1e-89 334.0 496 40.5
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 4.7e-89 332.8 527 40.8
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 1.0e-88 331.6 449 44.1
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 2.3e-88 330.5 452 44.7
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 4.0e-88 329.7 525 40.8
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 1.2e-87 328.2 482 42.3
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 1.2e-87 328.2 508 40.7
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 2.0e-87 327.4 456 43.0
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 2.6e-87 327.0 451 43.2
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 2.6e-87 327.0 451 43.0
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 5.8e-87 325.9 479 40.9
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 7.5e-87 325.5 456 41.7
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 9.8e-87 325.1 534 37.8
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 2.9e-86 323.6 460 42.6
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 2.9e-86 323.6 455 43.7
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 6.4e-86 322.4 460 42.0
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 6.4e-86 322.4 527 40.2
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 8.3e-86 322.0 468 42.5
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 1.4e-85 321.2 454 43.0
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 1.9e-85 320.9 457 43.3
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 1.9e-85 320.9 453 43.0
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 2.4e-85 320.5 464 41.6
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 5.4e-85 319.3 451 43.9
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 7.0e-85 318.9 450 42.9
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 7.0e-85 318.9 526 39.9
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 7.0e-85 318.9 461 42.1
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 1.6e-84 317.8 455 42.6
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 2.0e-84 317.4 452 42.7
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 2.0e-84 317.4 456 42.8
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 6.0e-84 315.8 465 41.5
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 6.0e-84 315.8 469 41.4
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 6.0e-84 315.8 462 41.8
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 6.0e-84 315.8 451 43.7
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 7.8e-84 315.5 454 42.3
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 7.8e-84 315.5 447 40.5
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 1.7e-83 314.3 448 43.1
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 1.7e-83 314.3 465 40.9
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 2.3e-83 313.9 451 40.1
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 3.0e-83 313.5 456 42.1
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 3.9e-83 313.2 456 42.5
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 5.0e-83 312.8 458 42.1
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 6.6e-83 312.4 446 41.5
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 8.6e-83 312.0 514 40.1
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 1.1e-82 311.6 456 42.3
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 1.1e-82 311.6 456 42.3
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 1.5e-82 311.2 457 42.5
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 1.5e-82 311.2 453 43.5
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 1.9e-82 310.8 447 39.8
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 2.5e-82 310.5 456 42.3
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 3.3e-82 310.1 477 41.1
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 3.3e-82 310.1 447 42.5
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 4.3e-82 309.7 498 40.8
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 9.5e-82 308.5 453 42.6
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 9.5e-82 308.5 446 42.4
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 9.5e-82 308.5 446 42.4
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 9.5e-82 308.5 446 42.4
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 1.6e-81 307.8 456 40.6
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 2.1e-81 307.4 456 41.2
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 2.1e-81 307.4 448 42.9
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 2.8e-81 307.0 444 40.5
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 1.1e-80 305.1 453 41.3
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 1.4e-80 304.7 452 41.4
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 1.8e-80 304.3 351 49.0
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 1.2e-79 301.6 462 40.0
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 1.5e-79 301.2 368 47.6
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 2.6e-79 300.4 463 40.6
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 3.4e-79 300.1 429 42.9
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 9.8e-79 298.5 453 40.8
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 1.3e-78 298.1 455 39.6
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 2.9e-78 297.0 579 36.8
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 4.9e-78 296.2 501 36.5
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 8.3e-78 295.4 445 40.7
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 2.1e-76 290.8 508 39.2
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 3.5e-76 290.0 442 40.3
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 7.8e-76 288.9 534 37.1
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 1.7e-75 287.7 544 35.1
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 8.6e-75 285.4 375 42.1
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 4.3e-74 283.1 443 40.0
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 2.1e-73 280.8 523 37.3
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 3.1e-72 276.9 531 37.3
Os02g0515000 Oryza sativa ssp. japonica HOM05D006020 ORTHO05D007665 9.9e-71 271.9 229 62.9
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 4.9e-70 269.6 416 41.3
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 1.9e-69 267.7 449 38.1
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.1e-68 264.2 308 48.4
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 7.8e-68 262.3 329 47.1
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 3.0e-67 260.4 303 46.5
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 1.6e-65 254.6 455 38.0
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 8.9e-64 248.8 546 32.2
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 1.5e-58 231.5 396 37.6
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 3.6e-57 226.9 204 58.8
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 2.1e-49 201.1 459 32.9
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 2.4e-48 197.6 458 35.2
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 7.6e-47 192.6 381 33.1
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 2.9e-46 190.7 192 54.7
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 2.9e-46 190.7 272 42.3
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 3.8e-46 190.3 420 31.2
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.3e-41 175.3 281 39.5
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.4e-40 171.0 307 36.5
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 2.9e-38 164.1 453 30.7
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 3.8e-38 163.7 423 32.6
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 8.4e-38 162.5 231 40.3
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 1.2e-36 158.7 142 55.6
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 3.4e-31 140.6 138 50.0
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 1.8e-27 128.3 324 31.8
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.5e-26 125.2 125 52.8
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 5.9e-23 113.2 119 49.6
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 8.8e-19 99.4 128 42.2
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 1.1e-16 92.4 244 31.1
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 2.0e-15 88.2 139 36.7
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 3.8e-14 84.0 275 27.6
PRCOL_00001532 Prasinoderma coloniale HOM05D006020 ORTHO05D007665 4.2e-13 80.5 191 28.8
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 6.3e-09 66.6 222 28.4
MBI16_g14988_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 8.5e-06 56.2 98 32.7


User provided reference genes

Program Settings