Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 2.6e-121 438.7 223 100.0
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 6.7e-101 370.9 223 83.4
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 6.4e-67 258.1 234 62.8
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 9.2e-66 254.2 234 62.8
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 3.4e-60 235.7 226 58.8
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 6.4e-59 231.5 224 57.6
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 8.3e-59 231.1 200 60.0
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 8.3e-59 231.1 200 60.0
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.1e-58 230.7 200 60.5
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 2.4e-58 229.6 233 55.8
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 3.2e-58 229.2 240 56.2
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 7.0e-58 228.0 226 54.9
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.2e-57 227.3 234 57.7
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 4.6e-57 225.3 236 57.2
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 6.0e-57 224.9 224 56.2
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 1.0e-56 224.2 226 54.4
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.0e-56 224.2 202 60.9
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 1.7e-56 223.4 202 59.4
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 2.3e-56 223.0 233 54.1
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 2.3e-56 223.0 242 55.8
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 3.0e-56 222.6 191 61.3
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 3.9e-56 222.2 226 54.0
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 3.9e-56 222.2 225 56.0
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 3.9e-56 222.2 191 61.8
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 5.0e-56 221.9 234 54.7
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 6.6e-56 221.5 189 60.3
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 1.5e-55 220.3 235 54.9
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 1.9e-55 219.9 224 54.9
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 1.9e-55 219.9 233 55.4
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 2.5e-55 219.5 236 56.4
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 2.5e-55 219.5 190 61.6
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 5.6e-55 218.4 210 57.6
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 7.3e-55 218.0 233 54.9
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 7.3e-55 218.0 238 55.5
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 9.5e-55 217.6 234 54.3
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 9.5e-55 217.6 250 54.0
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 1.2e-54 217.2 243 53.1
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.6e-54 216.9 230 55.2
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 1.6e-54 216.9 229 57.6
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 2.8e-54 216.1 225 56.9
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 2.8e-54 216.1 232 53.9
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 3.6e-54 215.7 233 54.9
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 1.1e-53 214.2 192 60.4
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.1e-53 214.2 224 54.0
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 1.4e-53 213.8 233 52.8
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.4e-53 213.8 224 53.6
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 1.8e-53 213.4 235 54.5
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.8e-53 213.4 232 54.3
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 2.3e-53 213.0 223 53.8
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.1e-53 212.6 235 52.8
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 3.1e-53 212.6 226 53.5
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 3.1e-53 212.6 204 57.4
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 4.0e-53 212.2 234 52.1
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 5.2e-53 211.8 208 54.3
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 8.9e-53 211.1 235 52.8
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 8.9e-53 211.1 222 55.0
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 8.9e-53 211.1 222 55.0
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.2e-52 210.7 226 52.7
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 1.2e-52 210.7 198 58.1
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.5e-52 210.3 237 54.0
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 2.0e-52 209.9 222 53.6
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 2.0e-52 209.9 241 53.5
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 2.6e-52 209.5 224 53.6
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 3.4e-52 209.1 191 60.7
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 7.5e-52 208.0 238 52.9
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 6.4e-51 204.9 219 54.8
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 1.1e-50 204.1 211 55.9
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 1.1e-50 204.1 215 54.0
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 1.1e-50 204.1 196 57.1
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 1.9e-50 203.4 235 53.2
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 4.1e-50 202.2 199 56.8
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 5.4e-50 201.8 237 51.5
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 5.4e-50 201.8 176 61.4
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 7.1e-50 201.4 232 50.4
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 1.6e-49 200.3 192 59.4
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 7.8e-49 198.0 222 52.3
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 7.8e-49 198.0 234 53.4
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 7.8e-49 198.0 192 56.8
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 1.0e-48 197.6 228 50.0
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 1.3e-48 197.2 214 54.7
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 2.3e-48 196.4 226 53.1
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 3.0e-48 196.1 231 52.4
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 3.9e-48 195.7 233 50.6
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 6.6e-48 194.9 195 55.4
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 6.6e-48 194.9 239 48.1
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 1.9e-47 193.4 205 52.7
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 3.3e-47 192.6 201 54.7
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 4.3e-47 192.2 195 57.9
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 7.3e-47 191.4 157 65.0
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 2.8e-46 189.5 154 63.6
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 2.8e-46 189.5 153 64.1
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 4.7e-46 188.7 209 52.2
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 8.1e-46 188.0 217 51.2
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 8.1e-46 188.0 153 63.4
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 1.1e-45 187.6 202 56.4
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 1.8e-45 186.8 167 61.7
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 1.8e-45 186.8 331 41.1
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 4.0e-45 185.7 232 51.7
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 4.0e-45 185.7 173 61.8
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 6.8e-45 184.9 232 50.9
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 1.2e-44 184.1 183 55.2
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 2.6e-44 183.0 199 52.3
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 2.6e-44 183.0 216 51.4
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 5.8e-44 181.8 205 49.8
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 1.7e-43 180.3 192 55.7
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.2e-43 179.9 156 60.9
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 3.8e-43 179.1 196 54.1
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 4.9e-43 178.7 203 50.2
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 6.4e-43 178.3 277 43.3
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 1.1e-42 177.6 205 49.8
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 2.4e-42 176.4 212 52.4
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 2.4e-42 176.4 207 48.8
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 3.2e-42 176.0 150 63.3
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 4.1e-42 175.6 205 48.3
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 5.4e-42 175.3 231 51.1
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 7.1e-42 174.9 187 55.6
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 9.2e-42 174.5 205 47.8
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 1.2e-41 174.1 253 47.8
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 1.2e-41 174.1 205 47.8
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 1.2e-41 174.1 205 47.8
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 1.2e-41 174.1 194 51.0
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 1.6e-41 173.7 191 51.3
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 4.6e-41 172.2 200 50.5
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 6.0e-41 171.8 185 51.4
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 1.0e-40 171.0 247 46.2
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 1.3e-40 170.6 204 52.0
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 1.7e-40 170.2 201 47.8
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 1.7e-40 170.2 194 53.1
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 3.9e-40 169.1 244 45.9
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 3.9e-40 169.1 179 53.6
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 1.1e-39 167.5 224 46.9
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 2.5e-39 166.4 244 45.1
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 3.3e-39 166.0 177 53.1
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 3.3e-39 166.0 218 49.1
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 4.3e-39 165.6 117 68.4
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 4.3e-39 165.6 240 46.7
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 5.6e-39 165.2 200 49.5
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 7.3e-39 164.9 260 42.3
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 9.6e-39 164.5 171 50.9
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 6.2e-38 161.8 181 51.4
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 8.1e-38 161.4 186 51.6
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.4e-37 160.6 229 44.5
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 5.2e-37 158.7 197 50.8
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 5.2e-37 158.7 118 66.1
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 2.6e-36 156.4 191 45.0
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 2.9e-35 152.9 100 72.0
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 6.4e-35 151.8 126 61.9
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 9.3e-34 147.9 202 45.5
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 1.2e-33 147.5 89 74.2
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 1.0e-32 144.4 195 46.7
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 4.8e-30 135.6 216 41.7
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 1.8e-29 133.7 83 73.5
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 1.8e-29 133.7 83 73.5
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 5.3e-29 132.1 124 58.1
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.7e-27 127.1 232 40.5
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 2.9e-27 126.3 155 49.0
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 5.4e-26 122.1 111 60.4
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 1.2e-25 120.9 79 70.9
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 4.6e-25 119.0 132 50.0
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 7.4e-23 111.7 164 43.3
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 9.0e-21 104.8 61 78.7
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 7.1e-18 95.1 116 42.2
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 7.6e-12 75.1 79 50.6
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 3.2e-10 69.7 78 44.9
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 1.2e-09 67.8 113 35.4
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 1.1e-07 61.2 40 65.0
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 7.4e-07 58.5 41 61.0


User provided reference genes

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