Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb240170 Zea mays HOM05D004621 ORTHO05D005817 6.6e-140 500.7 263 100.0
Os02g0217800 Oryza sativa ssp. japonica HOM05D004621 ORTHO05D005817 1.1e-97 360.5 249 76.3
HPP92_023989 Vanilla planifolia HOM05D004621 ORTHO05D005817 1.7e-74 283.5 226 65.5
MBI05_g23629_MAGBIO Magnolia biondii HOM05D004621 ORTHO05D005817 1.1e-73 280.8 249 57.8
SalBow4G1696 Salvia bowleyana HOM05D004621 ORTHO05D005817 1.5e-70 270.4 235 58.7
Nn6g35569 Nelumbo nucifera HOM05D004621 ORTHO05D005817 2.5e-70 269.6 218 63.3
Lj8A491T35 Lonicera japonica HOM05D004621 ORTHO05D005817 4.2e-70 268.9 218 61.5
Lsat_1_v5_gn_5_78680 Lactuca sativa HOM05D004621 ORTHO05D005817 5.5e-70 268.5 217 60.8
Ciclev10010180m.g Citrus clementina HOM05D004621 ORTHO05D005817 7.2e-70 268.1 243 57.2
Lj8A495T43 Lonicera japonica HOM05D004621 ORTHO05D005817 3.6e-69 265.8 249 56.2
Migut.A00101 Erythranthe guttata HOM05D004621 ORTHO05D005817 1.0e-68 264.2 234 58.5
AUR62020569 Chenopodium quinoa HOM05D004621 ORTHO05D005817 1.4e-68 263.8 226 58.8
Cpa.g.sc126.50 Carica papaya HOM05D004621 ORTHO05D005817 1.8e-68 263.5 242 56.6
HPP92_023996 Vanilla planifolia HOM05D004621 ORTHO05D005817 4.0e-68 262.3 233 59.7
GSVIVG01035427001 Vitis vinifera HOM05D004621 ORTHO05D005817 4.0e-68 262.3 234 58.1
AUR62009103 Chenopodium quinoa HOM05D004621 ORTHO05D005817 5.2e-68 261.9 225 59.6
HanXRQChr10g0309801 Helianthus annuus HOM05D004621 ORTHO05D005817 5.2e-68 261.9 229 57.2
COL.COLO4_21108 Corchorus olitorius HOM05D004621 ORTHO05D005817 3.4e-67 259.2 252 54.8
Cc08_g11070 Coffea canephora HOM05D004621 ORTHO05D005817 4.4e-67 258.8 233 57.1
QL02p000390 Quercus lobata HOM05D004621 ORTHO05D005817 5.7e-67 258.5 217 58.5
Ah.10g034040 Amaranthus hybridus HOM05D004621 ORTHO05D005817 7.5e-67 258.1 245 54.3
Rhsim05G0135500 Rhododendron simsii HOM05D004621 ORTHO05D005817 7.5e-67 258.1 239 56.5
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 7.5e-67 258.1 245 56.3
FAN20G0813 Fragaria x ananassa HOM05D004621 ORTHO05D005817 9.8e-67 257.7 245 52.7
Nitab4.5_0009148g0020 Nicotiana tabacum HOM05D004621 ORTHO05D005817 9.8e-67 257.7 236 57.6
Aqoxy2G03981 Aquilegia oxysepala HOM05D004621 ORTHO05D005817 1.3e-66 257.3 219 58.9
CANSAT21G1762 Cannabis sativa HOM05D004621 ORTHO05D005817 1.7e-66 256.9 252 54.4
PSO210G2988 Papaver somniferum HOM05D004621 ORTHO05D005817 1.7e-66 256.9 255 54.5
Cfa017997 Carpinus fangiana HOM05D004621 ORTHO05D005817 2.8e-66 256.1 218 57.3
SGA_v2.0_scaffold20G09183 Striga asiatica HOM05D004621 ORTHO05D005817 2.8e-66 256.1 232 56.5
FAN15G0359 Fragaria x ananassa HOM05D004621 ORTHO05D005817 4.9e-66 255.4 237 53.2
Hma1.2p1_0196F.1_g084950 Hydrangea macrophylla HOM05D004621 ORTHO05D005817 4.9e-66 255.4 229 58.1
DCAR_007741 Daucus carota HOM05D004621 ORTHO05D005817 1.4e-65 253.8 226 58.0
ECA234G1492 Erigeron canadensis HOM05D004621 ORTHO05D005817 1.4e-65 253.8 248 55.6
Atru.chr7.1890 Acer truncatum HOM05D004621 ORTHO05D005817 1.8e-65 253.4 237 54.9
Atru.chr7.1918 Acer truncatum HOM05D004621 ORTHO05D005817 1.8e-65 253.4 237 54.9
arahy.Tifrunner.gnm1.ann1.I8I12Q Arachis hypogaea HOM05D004621 ORTHO05D005817 1.8e-65 253.4 253 53.0
Thecc.09G059300 Theobroma cacao HOM05D004621 ORTHO05D005817 1.8e-65 253.4 242 55.8
TWI32G0723 Tripterygium wilfordii HOM05D004621 ORTHO05D005817 1.8e-65 253.4 236 56.4
FvH4_2g31380 Fragaria vesca HOM05D004621 ORTHO05D005817 2.4e-65 253.1 237 52.3
Sopen08g017990 Solanum pennellii HOM05D004621 ORTHO05D005817 2.4e-65 253.1 243 55.6
Solyc08g062560.4 Solanum lycopersicum HOM05D004621 ORTHO05D005817 3.1e-65 252.7 243 55.6
ClCG05G018120 Citrullus lanatus HOM05D004621 ORTHO05D005817 5.4e-65 251.9 242 52.5
PSO210G1875 Papaver somniferum HOM05D004621 ORTHO05D005817 5.4e-65 251.9 255 53.3
Gohir.A05G040100 Gossypium hirsutum HOM05D004621 ORTHO05D005817 7.0e-65 251.5 227 55.5
RcHm_v2.0_Chr6g0311441 Rosa chinensis HOM05D004621 ORTHO05D005817 7.0e-65 251.5 237 52.3
CsaV3_4G035890 Cucumis sativus L. HOM05D004621 ORTHO05D005817 1.2e-64 250.8 243 52.3
Gohir.D05G041600 Gossypium hirsutum HOM05D004621 ORTHO05D005817 1.6e-64 250.4 227 55.5
Peaxi162Scf01253g00025 Petunia axillaris HOM05D004621 ORTHO05D005817 1.6e-64 250.4 218 59.2
Sed0025089 Sechium edule HOM05D004621 ORTHO05D005817 1.6e-64 250.4 226 55.8
Sc09g0009980 Simmondsia chinensis HOM05D004621 ORTHO05D005817 1.6e-64 250.4 218 58.3
Gorai.009G042200 Gossypium raimondii HOM05D004621 ORTHO05D005817 2.0e-64 250.0 227 55.5
Ca_15845_v3 Cicer arietinum L. HOM05D004621 ORTHO05D005817 2.7e-64 249.6 218 56.0
ATR0051G016 Amborella trichopoda HOM05D004621 ORTHO05D005817 3.5e-64 249.2 227 55.5
PGSC0003DMG400008208 Solanum tuberosum HOM05D004621 ORTHO05D005817 3.5e-64 249.2 243 54.7
EL10Ac2g03807 Beta vulgaris HOM05D004621 ORTHO05D005817 5.9e-64 248.4 250 52.0
FAN27G1750 Fragaria x ananassa HOM05D004621 ORTHO05D005817 5.9e-64 248.4 237 51.9
MSTRG.25978 Avicennia marina HOM05D004621 ORTHO05D005817 7.8e-64 248.1 241 53.1
Hund19431 Selenicereus undatus HOM05D004621 ORTHO05D005817 7.8e-64 248.1 248 54.4
SEGI_04699 Sequoiadendron giganteum HOM05D004621 ORTHO05D005817 7.8e-64 248.1 225 57.3
PGR031G3863 Punica granatum HOM05D004621 ORTHO05D005817 1.0e-63 247.7 217 57.6
unitig_88.g27672 Utricularia gibba HOM05D004621 ORTHO05D005817 1.0e-63 247.7 222 55.4
Duzib168G0020 Durio zibethinus HOM05D004621 ORTHO05D005817 1.3e-63 247.3 251 53.8
Nitab4.5_0000286g0110 Nicotiana tabacum HOM05D004621 ORTHO05D005817 1.3e-63 247.3 231 57.6
Eucgr.C00676 Eucalyptus grandis HOM05D004621 ORTHO05D005817 2.3e-63 246.5 251 52.6
FAN24G3059 Fragaria x ananassa HOM05D004621 ORTHO05D005817 2.9e-63 246.1 253 49.8
Haze_18137 Corylus avellana HOM05D004621 ORTHO05D005817 3.8e-63 245.7 243 52.3
Manes.16G083500 Manihot esculenta HOM05D004621 ORTHO05D005817 5.0e-63 245.4 248 54.4
CARHR187480 Cardamine hirsuta HOM05D004621 ORTHO05D005817 6.6e-63 245.0 220 56.8
TPR.G3533 Trifolium pratense HOM05D004621 ORTHO05D005817 8.6e-63 244.6 218 56.0
MD15G1053900 Malus domestica HOM05D004621 ORTHO05D005817 1.9e-62 243.4 238 53.4
Oeu018033.1 Olea europaea HOM05D004621 ORTHO05D005817 1.9e-62 243.4 262 52.3
Psat5g035360 Pisum sativum HOM05D004621 ORTHO05D005817 1.9e-62 243.4 246 51.6
THA.LOC104811228 Tarenaya hassleriana HOM05D004621 ORTHO05D005817 3.3e-62 242.7 241 53.1
MELO3C016896.2 Cucumis melo HOM05D004621 ORTHO05D005817 4.3e-62 242.3 264 48.9
Glyma.04G054300 Glycine max HOM05D004621 ORTHO05D005817 4.3e-62 242.3 218 53.7
Lj1g0023758 Lotus japonicus HOM05D004621 ORTHO05D005817 4.3e-62 242.3 239 51.9
Lalb_Chr11g0063251 Lupinus albus HOM05D004621 ORTHO05D005817 5.6e-62 241.9 220 52.3
Glyma.06G054600 Glycine max HOM05D004621 ORTHO05D005817 9.5e-62 241.1 218 54.1
BolC2t11942H Brassica oleracea HOM05D004621 ORTHO05D005817 1.6e-61 240.4 241 53.5
BraA02t08889Z Brassica rapa HOM05D004621 ORTHO05D005817 2.8e-61 239.6 237 54.0
Sp2g21560 Schrenkiella parvula HOM05D004621 ORTHO05D005817 2.8e-61 239.6 229 55.9
AL6G38190 Arabidopsis lyrata HOM05D004621 ORTHO05D005817 3.6e-61 239.2 223 56.1
BcaC03g17845 Brassica carinata HOM05D004621 ORTHO05D005817 3.6e-61 239.2 241 53.1
C02p58840 Brassica napus HOM05D004621 ORTHO05D005817 3.6e-61 239.2 241 53.1
Thhalv10004076m.g Eutrema salsugineum HOM05D004621 ORTHO05D005817 6.1e-61 238.4 241 53.9
AT5G26180 Arabidopsis thaliana HOM05D004621 ORTHO05D005817 8.0e-61 238.0 216 56.5
Prupe.1G407400 Prunus persica HOM05D004621 ORTHO05D005817 1.0e-60 237.7 244 51.2
A02p39240 Brassica napus HOM05D004621 ORTHO05D005817 1.4e-60 237.3 237 53.6
arahy.Tifrunner.gnm1.ann1.T7L0BR Arachis hypogaea HOM05D004621 ORTHO05D005817 1.8e-60 236.9 253 51.4
Medtr3g104760 Medicago truncatula HOM05D004621 ORTHO05D005817 3.0e-60 236.1 218 53.7
Potri.006G224000 Populus trichocarpa HOM05D004621 ORTHO05D005817 8.9e-60 234.6 252 50.4
Aa31LG1G21020 Aethionema arabicum HOM05D004621 ORTHO05D005817 2.0e-59 233.4 241 52.7
Phvul.009G080100 Phaseolus vulgaris HOM05D004621 ORTHO05D005817 2.0e-59 233.4 247 48.2
VMungo1309G3014 Vigna mungo HOM05D004621 ORTHO05D005817 2.6e-59 233.0 220 51.8
BcaB04g19746 Brassica carinata HOM05D004621 ORTHO05D005817 4.4e-59 232.3 236 52.1
BcaB07g29951 Brassica carinata HOM05D004621 ORTHO05D005817 5.7e-59 231.9 237 51.5
Carub.0006s2397 Capsella rubella HOM05D004621 ORTHO05D005817 5.7e-59 231.9 252 52.0
Sabra06G0173000 Salix brachista HOM05D004621 ORTHO05D005817 1.7e-58 230.3 252 50.4
A09p05980 Brassica napus HOM05D004621 ORTHO05D005817 3.7e-58 229.2 241 51.5
BraA09t36240Z Brassica rapa HOM05D004621 ORTHO05D005817 1.4e-57 227.3 241 50.2
BcaC04g23605 Brassica carinata HOM05D004621 ORTHO05D005817 7.0e-57 224.9 241 50.6
C09p06540 Brassica napus HOM05D004621 ORTHO05D005817 2.7e-56 223.0 241 50.6
BolC9t53577H Brassica oleracea HOM05D004621 ORTHO05D005817 2.7e-56 223.0 241 50.2
Mapoly0057s0032 Marchantia polymorpha HOM05D004621 ORTHO05D005817 1.1e-46 191.0 210 44.8
Pp3c1_12750 Physcomitrium patens HOM05D004621 ORTHO05D005817 1.5e-46 190.7 212 48.1
Lsat_1_v5_gn_5_184340 Lactuca sativa HOM05D004621 ORTHO05D005817 1.2e-45 187.6 161 55.9
Lsat_1_v5_gn_1_100981 Lactuca sativa HOM05D004621 ORTHO05D005817 4.7e-45 185.7 162 54.9
Lsat_1_v5_gn_1_46680 Lactuca sativa HOM05D004621 ORTHO05D005817 4.7e-45 185.7 162 54.9
Lsat_1_v5_gn_2_21720 Lactuca sativa HOM05D004621 ORTHO05D005817 4.7e-45 185.7 162 54.9
Lsat_1_v5_gn_4_64761 Lactuca sativa HOM05D004621 ORTHO05D005817 4.7e-45 185.7 162 54.9
Lsat_1_v5_gn_4_98001 Lactuca sativa HOM05D004621 ORTHO05D005817 4.7e-45 185.7 162 54.9
Lsat_1_v5_gn_6_36380 Lactuca sativa HOM05D004621 ORTHO05D005817 4.7e-45 185.7 162 54.9
BcaB04g19747 Brassica carinata HOM05D004621 ORTHO05D005817 1.1e-44 184.5 207 48.8
Lsat_1_v5_gn_1_16680 Lactuca sativa HOM05D004621 ORTHO05D005817 2.3e-44 183.3 162 54.3
AagrBONN_evm.TU.Sc2ySwM_228.3331 Anthoceros agrestis HOM05D004621 ORTHO05D005817 2.2e-42 176.8 207 47.3
CBR_g41718 Chara braunii HOM05D004621 ORTHO05D005817 2.4e-41 173.3 211 44.5
FAN17G2977 Fragaria x ananassa HOM05D004621 ORTHO05D005817 4.1e-41 172.6 232 42.7
BcaB07g29949 Brassica carinata HOM05D004621 ORTHO05D005817 3.3e-38 162.9 194 46.4
Hma1.2p1_0231F.1_g097600 Hydrangea macrophylla HOM05D004621 ORTHO05D005817 2.8e-37 159.8 144 57.6
CDE08G0262 Ceratophyllum demersum HOM05D004621 ORTHO05D005817 1.7e-34 150.6 143 51.0
CiPaw.16G067600 Carya illinoinensis HOM05D004621 ORTHO05D005817 4.7e-29 132.5 120 52.5
Dinv12465 Davidia involucrata HOM05D004621 ORTHO05D005817 1.1e-28 131.3 120 51.7
CAN.G42.5 Capsicum annuum HOM05D004621 ORTHO05D005817 1.4e-28 131.0 137 50.4
Dinv12464 Davidia involucrata HOM05D004621 ORTHO05D005817 1.4e-28 131.0 93 71.0
vmacro19714 Vaccinium macrocarpon HOM05D004621 ORTHO05D005817 1.5e-27 127.5 192 41.1
Lsat_1_v5_gn_5_92260 Lactuca sativa HOM05D004621 ORTHO05D005817 3.2e-25 119.8 77 68.8
SMO169G0045 Selaginella moellendorffii HOM05D004621 ORTHO05D005817 1.6e-24 117.5 184 39.1
SHI18707 Sapria himalayana HOM05D004621 ORTHO05D005817 6.6e-23 112.1 127 53.5
Cre16.g647602 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D006241 3.6e-21 106.3 286 27.3
SHI18706 Sapria himalayana HOM05D004621 ORTHO05D005817 2.0e-19 100.5 114 45.6
MCO11G750 Micromonas commoda HOM05D004621 ORTHO05D005817 6.4e-18 95.5 223 32.7
CSS0016381 Camellia sinensis var. sinensis HOM05D004621 ORTHO05D005817 4.3e-14 82.8 86 61.6
MD08G1067900 Malus domestica HOM05D004621 ORTHO05D005817 2.8e-13 80.1 60 60.0
Atru.chr7.1889 Acer truncatum HOM05D004621 ORTHO05D005817 4.0e-12 76.3 112 45.5
Atru.chr7.1917 Acer truncatum HOM05D004621 ORTHO05D005817 4.0e-12 76.3 112 45.5
MELO3C028645.2 Cucumis melo HOM05D004621 ORTHO05D005817 4.0e-12 76.3 46 69.6
Sopen08g017950 Solanum pennellii HOM05D004621 ORTHO05D005817 4.0e-12 76.3 63 57.1
MELO3C028647.2 Cucumis melo HOM05D004621 ORTHO05D005817 2.2e-10 70.5 61 55.7
Lsat_1_v5_gn_5_92240 Lactuca sativa HOM05D004621 ORTHO05D005817 1.1e-09 68.2 62 48.4
Solyc08g062433.1 Solanum lycopersicum HOM05D004621 ORTHO05D005817 3.2e-09 66.6 80 45.0
DCAR_003934 Daucus carota HOM05D004621 ORTHO05D005817 4.6e-08 62.8 49 63.3
PRCOL_00003600 Prasinoderma coloniale HOM05D004621 ORTHO05D005817 4.6e-08 62.8 197 27.9


User provided reference genes

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