Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb239560 Zea mays HOM05D006309 ORTHO05D007937 1.5e-28 128.6 58 100.0
Os01g0250600 Oryza sativa ssp. japonica HOM05D006309 ORTHO05D007937 8.0e-22 106.3 50 94.0
AUR62000475 Chenopodium quinoa HOM05D006309 ORTHO05D007937 3.7e-19 97.4 50 84.0
Gohir.D08G174300 Gossypium hirsutum HOM05D006309 ORTHO05D007937 3.7e-19 97.4 50 84.0
Gorai.004G182000 Gossypium raimondii HOM05D006309 ORTHO05D007937 3.7e-19 97.4 50 84.0
AUR62017099 Chenopodium quinoa HOM05D006309 ORTHO05D007937 6.4e-19 96.7 50 82.0
Ah.06g190700 Amaranthus hybridus HOM05D006309 ORTHO05D007937 8.3e-19 96.3 50 80.0
Hund05518 Selenicereus undatus HOM05D006309 ORTHO05D007937 1.1e-18 95.9 50 80.0
Duzib205G1677 Durio zibethinus HOM05D006309 ORTHO05D007937 1.4e-18 95.5 50 82.0
EL10Ac4g09558 Beta vulgaris HOM05D006309 ORTHO05D007937 2.4e-18 94.7 49 81.6
Sc16g0009400 Simmondsia chinensis HOM05D006309 ORTHO05D007937 2.4e-18 94.7 50 80.0
vmacro01669 Vaccinium macrocarpon HOM05D006309 ORTHO05D007937 2.4e-18 94.7 52 76.9
Dinv24513 Davidia involucrata HOM05D006309 ORTHO05D007937 3.2e-18 94.4 50 82.0
QL03p010963 Quercus lobata HOM05D006309 ORTHO05D007937 3.2e-18 94.4 50 82.0
RcHm_v2.0_Chr3g0458531 Rosa chinensis HOM05D006309 ORTHO05D007937 4.1e-18 94.0 50 82.0
CANSAT54G2801 Cannabis sativa HOM05D006309 ORTHO05D007937 5.4e-18 93.6 50 80.0
CiPaw.04G111200 Carya illinoinensis HOM05D006309 ORTHO05D007937 5.4e-18 93.6 50 80.0
CiPaw.07G036200 Carya illinoinensis HOM05D006309 ORTHO05D007937 7.0e-18 93.2 50 80.0
Nitab4.5_0000936g0050 Nicotiana tabacum HOM05D006309 ORTHO05D007937 7.0e-18 93.2 50 82.0
Nitab4.5_0004454g0020 Nicotiana tabacum HOM05D006309 ORTHO05D007937 7.0e-18 93.2 50 82.0
Peaxi162Scf00171g00731 Petunia axillaris HOM05D006309 ORTHO05D007937 7.0e-18 93.2 50 82.0
CAN.G637.25 Capsicum annuum HOM05D006309 ORTHO05D007937 9.2e-18 92.8 50 80.0
Oeu061901.1 Olea europaea HOM05D006309 ORTHO05D007937 9.2e-18 92.8 50 80.0
Cc02_g35850 Coffea canephora HOM05D006309 ORTHO05D007937 1.2e-17 92.4 50 82.0
Gohir.A08G153400 Gossypium hirsutum HOM05D006309 ORTHO05D007937 1.2e-17 92.4 50 82.0
CSS0019637 Camellia sinensis var. sinensis HOM05D006309 ORTHO05D007937 1.6e-17 92.0 50 80.0
CSS0033999 Camellia sinensis var. sinensis HOM05D006309 ORTHO05D007937 1.6e-17 92.0 50 80.0
Haze_03988 Corylus avellana HOM05D006309 ORTHO05D007937 1.6e-17 92.0 50 80.0
Hma1.2p1_0759F.1_g213920 Hydrangea macrophylla HOM05D006309 ORTHO05D007937 1.6e-17 92.0 50 80.0
Sc09g0002420 Simmondsia chinensis HOM05D006309 ORTHO05D007937 1.6e-17 92.0 50 76.0
vmacro16416 Vaccinium macrocarpon HOM05D006309 ORTHO05D007937 1.6e-17 92.0 50 80.0
Aa31LG2G11310 Aethionema arabicum HOM05D006309 ORTHO05D007937 2.0e-17 91.7 50 78.0
AL1G67090 Arabidopsis lyrata HOM05D006309 ORTHO05D007937 2.0e-17 91.7 50 78.0
BcaB07g31141 Brassica carinata HOM05D006309 ORTHO05D007937 2.0e-17 91.7 50 78.0
BcaC04g22081 Brassica carinata HOM05D006309 ORTHO05D007937 2.0e-17 91.7 50 78.0
A09p18900 Brassica napus HOM05D006309 ORTHO05D007937 2.0e-17 91.7 50 78.0
C09p23680 Brassica napus HOM05D006309 ORTHO05D007937 2.0e-17 91.7 50 78.0
BolC9t55290H Brassica oleracea HOM05D006309 ORTHO05D007937 2.0e-17 91.7 50 78.0
BraA09t37510Z Brassica rapa HOM05D006309 ORTHO05D007937 2.0e-17 91.7 50 78.0
Carub.0002s0712 Capsella rubella HOM05D006309 ORTHO05D007937 2.0e-17 91.7 50 78.0
CARHR288700 Cardamine hirsuta HOM05D006309 ORTHO05D007937 2.0e-17 91.7 50 78.0
Thhalv10010969m.g Eutrema salsugineum HOM05D006309 ORTHO05D007937 2.0e-17 91.7 50 78.0
Sp1g28800 Schrenkiella parvula HOM05D006309 ORTHO05D007937 2.0e-17 91.7 50 78.0
Solyc03g098120.3 Solanum lycopersicum HOM05D006309 ORTHO05D007937 2.0e-17 91.7 50 78.0
Sopen03g028820 Solanum pennellii HOM05D006309 ORTHO05D007937 2.0e-17 91.7 50 78.0
PGSC0003DMG400031051 Solanum tuberosum HOM05D006309 ORTHO05D007937 2.0e-17 91.7 50 78.0
Migut.H01672 Erythranthe guttata HOM05D006309 ORTHO05D007937 2.7e-17 91.3 50 78.0
Manes.09G181100 Manihot esculenta HOM05D006309 ORTHO05D007937 2.7e-17 91.3 50 80.0
ECA233G1704 Erigeron canadensis HOM05D006309 ORTHO05D007937 3.5e-17 90.9 50 78.0
Sp2g05970 Schrenkiella parvula HOM05D006309 ORTHO05D007937 3.5e-17 90.9 50 76.0
AT1G57540 Arabidopsis thaliana HOM05D006309 ORTHO05D007937 4.6e-17 90.5 50 76.0
Cfa012394 Carpinus fangiana HOM05D006309 ORTHO05D007937 4.6e-17 90.5 50 76.0
Thecc.03G310900 Theobroma cacao HOM05D006309 ORTHO05D007937 4.6e-17 90.5 50 78.0
Ca_10200_v3 Cicer arietinum L. HOM05D006309 ORTHO05D007937 6.0e-17 90.1 50 78.0
HanXRQChr06g0180851 Helianthus annuus HOM05D006309 ORTHO05D007937 6.0e-17 90.1 50 76.0
HanXRQChr16g0506271 Helianthus annuus HOM05D006309 ORTHO05D007937 6.0e-17 90.1 50 76.0
Psat6g155680 Pisum sativum HOM05D006309 ORTHO05D007937 6.0e-17 90.1 50 78.0
Prupe.6G304700 Prunus persica HOM05D006309 ORTHO05D007937 6.0e-17 90.1 50 78.0
Rhsim11G0105200 Rhododendron simsii HOM05D006309 ORTHO05D007937 6.0e-17 90.1 50 78.0
GSVIVG01031328001 Vitis vinifera HOM05D006309 ORTHO05D007937 6.0e-17 90.1 50 74.0
CDE09G0003 Ceratophyllum demersum HOM05D006309 ORTHO05D007937 7.8e-17 89.7 50 78.0
Ciclev10013195m.g Citrus clementina HOM05D006309 ORTHO05D007937 7.8e-17 89.7 50 78.0
PGR083G2709 Punica granatum HOM05D006309 ORTHO05D007937 7.8e-17 89.7 50 76.0
Sabra13G0001700 Salix brachista HOM05D006309 ORTHO05D007937 7.8e-17 89.7 54 72.2
Sed0021183 Sechium edule HOM05D006309 ORTHO05D007937 7.8e-17 89.7 50 76.0
Atru.chr12.1543 Acer truncatum HOM05D006309 ORTHO05D007937 1.0e-16 89.4 50 78.0
arahy.Tifrunner.gnm1.ann1.01IKZ7 Arachis hypogaea HOM05D006309 ORTHO05D007937 1.0e-16 89.4 50 78.0
arahy.Tifrunner.gnm1.ann1.RC3JIS Arachis hypogaea HOM05D006309 ORTHO05D007937 1.0e-16 89.4 50 78.0
Cpa.g.sc48.50 Carica papaya HOM05D006309 ORTHO05D007937 1.0e-16 89.4 50 78.0
Lsat_1_v5_gn_1_112940 Lactuca sativa HOM05D006309 ORTHO05D007937 1.0e-16 89.4 50 76.0
MD12G1199900 Malus domestica HOM05D006309 ORTHO05D007937 1.0e-16 89.4 50 76.0
Rhsim11G0104500 Rhododendron simsii HOM05D006309 ORTHO05D007937 1.0e-16 89.4 50 76.0
THA.LOC104820476 Tarenaya hassleriana HOM05D006309 ORTHO05D007937 1.0e-16 89.4 50 74.0
Medtr1g484930 Medicago truncatula HOM05D006309 ORTHO05D007937 1.3e-16 89.0 50 78.0
Nn7g36656 Nelumbo nucifera HOM05D006309 ORTHO05D007937 1.3e-16 89.0 50 76.0
VMungo0720G0633 Vigna mungo HOM05D006309 ORTHO05D007937 1.3e-16 89.0 50 76.0
FvH4_6g08490 Fragaria vesca HOM05D006309 ORTHO05D007937 1.7e-16 88.6 50 76.0
FAN02G0285 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.7e-16 88.6 50 76.0
FAN05G1622 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.7e-16 88.6 50 76.0
FAN09G1610 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.7e-16 88.6 50 76.0
FAN14G3239 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.7e-16 88.6 50 76.0
TAR636G2194 Trochodendron aralioides HOM05D006309 ORTHO05D007937 1.7e-16 88.6 50 76.0
arahy.Tifrunner.gnm1.ann1.P9U7KY Arachis hypogaea HOM05D006309 ORTHO05D007937 2.3e-16 88.2 50 76.0
arahy.Tifrunner.gnm1.ann1.VGN228 Arachis hypogaea HOM05D006309 ORTHO05D007937 2.3e-16 88.2 50 76.0
ClCG02G014650 Citrullus lanatus HOM05D006309 ORTHO05D007937 2.3e-16 88.2 50 74.0
Potri.005G002900 Populus trichocarpa HOM05D006309 ORTHO05D007937 2.3e-16 88.2 50 76.0
Glyma.20G090800 Glycine max HOM05D006309 ORTHO05D007937 3.0e-16 87.8 50 76.0
Glyma.20G092200 Glycine max HOM05D006309 ORTHO05D007937 3.0e-16 87.8 50 76.0
Phvul.007G205000 Phaseolus vulgaris HOM05D006309 ORTHO05D007937 3.9e-16 87.4 50 74.0
Aqoxy2G02488 Aquilegia oxysepala HOM05D006309 ORTHO05D007937 6.6e-16 86.7 50 72.0
Lalb_Chr02g0147551 Lupinus albus HOM05D006309 ORTHO05D007937 6.6e-16 86.7 50 74.0
Lalb_Chr21g0310061 Lupinus albus HOM05D006309 ORTHO05D007937 6.6e-16 86.7 50 74.0
TPR.G2591 Trifolium pratense HOM05D006309 ORTHO05D007937 8.6e-16 86.3 50 74.0
Sabra05G0000300 Salix brachista HOM05D006309 ORTHO05D007937 1.1e-15 85.9 49 75.5
Sabra05G0014400 Salix brachista HOM05D006309 ORTHO05D007937 1.1e-15 85.9 49 75.5
DCAR_007528 Daucus carota HOM05D006309 ORTHO05D007937 1.9e-15 85.1 50 74.0
Lj5g0003279 Lotus japonicus HOM05D006309 ORTHO05D007937 3.3e-15 84.3 50 76.0
unitig_62.g23615 Utricularia gibba HOM05D006309 ORTHO05D007937 3.3e-15 84.3 50 74.0
MELO3C004152.2 Cucumis melo HOM05D006309 ORTHO05D007937 4.3e-15 84.0 50 72.0
SalBow4G0401 Salvia bowleyana HOM05D006309 ORTHO05D007937 4.3e-15 84.0 52 71.2
SalBow4G1963 Salvia bowleyana HOM05D006309 ORTHO05D007937 4.3e-15 84.0 52 71.2
SalBow4G2407 Salvia bowleyana HOM05D006309 ORTHO05D007937 4.3e-15 84.0 52 71.2
SalBow5G3054 Salvia bowleyana HOM05D006309 ORTHO05D007937 4.3e-15 84.0 50 74.0
TWI36G0052 Tripterygium wilfordii HOM05D006309 ORTHO05D007937 4.3e-15 84.0 50 74.0
CsaV3_2G007320 Cucumis sativus L. HOM05D006309 ORTHO05D007937 5.6e-15 83.6 50 70.0
ATR0796G010 Amborella trichopoda HOM05D006309 ORTHO05D007937 7.3e-15 83.2 50 72.0
FvH4_2g19190 Fragaria vesca HOM05D006309 ORTHO05D007937 7.3e-15 83.2 50 72.0
FAN24G3038 Fragaria x ananassa HOM05D006309 ORTHO05D007937 7.3e-15 83.2 50 72.0
Lj4g0016187 Lotus japonicus HOM05D006309 ORTHO05D007937 7.3e-15 83.2 50 74.0
Actinidia22855 Actinidia chinensis HOM05D006309 ORTHO05D007937 1.6e-14 82.0 50 72.0
FAN15G2822 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.6e-14 82.0 50 70.0
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 2.1e-14 81.6 49 73.5
HanXRQChr08g0212181 Helianthus annuus HOM05D006309 ORTHO05D007937 2.1e-14 81.6 44 75.0
Prupe.8G045300 Prunus persica HOM05D006309 ORTHO05D007937 8.1e-14 79.7 50 72.0
Glyma.09G093300 Glycine max HOM05D006309 ORTHO05D000504 1.4e-13 79.0 50 68.0
PSO210G0390 Papaver somniferum HOM05D006309 ORTHO05D007937 5.2e-13 77.0 50 66.0
PSO761G0726 Papaver somniferum HOM05D006309 ORTHO05D007937 5.2e-13 77.0 50 66.0
EL10Ac4g07573 Beta vulgaris HOM05D006309 ORTHO05D007937 1.7e-11 72.0 39 79.5
MBI18_g10373_MAGBIO Magnolia biondii HOM05D006309 ORTHO05D007937 2.9e-11 71.2 37 86.5
BNapus_Darmor_BZH_scaffold_223p00020 Brassica napus HOM05D006309 ORTHO05D007937 5.4e-10 67.0 39 74.4
Potri.013G002301 Populus trichocarpa HOM05D006309 ORTHO05D007937 1.0e-08 62.8 41 73.2
Mapoly0075s0044 Marchantia polymorpha HOM05D006309 ORTHO05D007937 1.1e-07 59.3 50 50.0
Pp3c8_1240 Physcomitrium patens HOM05D006309 ORTHO05D007937 1.9e-07 58.5 50 52.0
Dinv30948 Davidia involucrata HOM05D006309 ORTHO05D007937 1.2e-06 55.8 26 84.6


User provided reference genes

Program Settings