Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb239330 Zea mays HOM05D064750 ORTHO05D036592 5.6e-75 284.3 152 100.0
Zm00001eb239340 Zea mays HOM05D064750 ORTHO05D036592 3.2e-46 188.7 110 92.7
Os07g0447800 Oryza sativa ssp. japonica HOM05D002800 ORTHO05D008563 1.2e-21 107.1 78 73.1
Rhsim09G0151400 Rhododendron simsii HOM05D002800 ORTHO05D008563 4.0e-20 102.1 66 77.3
CDE08G1164 Ceratophyllum demersum HOM05D002800 ORTHO05D008563 5.2e-20 101.7 65 78.5
Actinidia32446 Actinidia chinensis HOM05D002800 ORTHO05D023340 1.5e-19 100.1 65 76.9
DCAR_006435 Daucus carota HOM05D002800 ORTHO05D008563 1.5e-19 100.1 75 68.0
RcHm_v2.0_Chr1g0363251 Rosa chinensis HOM05D002800 ORTHO05D008563 1.5e-19 100.1 64 75.0
Dinv36436 Davidia involucrata HOM05D002800 ORTHO05D008563 2.6e-19 99.4 65 76.9
FvH4_7g19370 Fragaria vesca HOM05D002800 ORTHO05D008563 3.4e-19 99.0 101 52.5
GSVIVG01016267001 Vitis vinifera HOM05D002800 ORTHO05D008563 3.4e-19 99.0 82 65.9
Duzib106G1770 Durio zibethinus HOM05D002800 ORTHO05D008563 4.4e-19 98.6 64 78.1
Thecc.10G075100 Theobroma cacao HOM05D002800 ORTHO05D008563 4.4e-19 98.6 64 78.1
THA.LOC104799379 Tarenaya hassleriana HOM05D002800 ORTHO05D008563 1.3e-18 97.1 63 77.8
Eucgr.J01084 Eucalyptus grandis HOM05D002800 ORTHO05D008563 1.7e-18 96.7 65 75.4
Ciclev10031045m.g Citrus clementina HOM05D002800 ORTHO05D008563 2.2e-18 96.3 64 75.0
Prupe.2G213100 Prunus persica HOM05D002800 ORTHO05D008563 2.2e-18 96.3 64 78.1
TWI15G0073 Tripterygium wilfordii HOM05D002800 ORTHO05D008563 2.2e-18 96.3 64 75.0
CARHR195660 Cardamine hirsuta HOM05D002800 ORTHO05D008563 2.8e-18 95.9 63 71.4
FAN10G1943 Fragaria x ananassa HOM05D002800 ORTHO05D008563 2.8e-18 95.9 101 51.5
FAN10G3729 Fragaria x ananassa HOM05D002800 ORTHO05D008563 2.8e-18 95.9 101 51.5
Gohir.A10G205400 Gossypium hirsutum HOM05D002800 ORTHO05D008563 2.8e-18 95.9 64 75.0
Gohir.D10G213700 Gossypium hirsutum HOM05D002800 ORTHO05D008563 2.8e-18 95.9 64 75.0
FAN06G4795 Fragaria x ananassa HOM05D002800 ORTHO05D008563 3.7e-18 95.5 101 51.5
Aqoxy1G01227 Aquilegia oxysepala HOM05D002800 ORTHO05D008563 4.9e-18 95.1 65 75.4
Cc02_g11310 Coffea canephora HOM05D002800 ORTHO05D008563 4.9e-18 95.1 65 70.8
HanXRQChr14g0456851 Helianthus annuus HOM05D002800 ORTHO05D008563 4.9e-18 95.1 64 75.0
Sabra08G0026900 Salix brachista HOM05D002800 ORTHO05D008563 4.9e-18 95.1 80 62.5
Cpa.g.sc53.86 Carica papaya HOM05D002800 ORTHO05D008563 6.3e-18 94.7 64 73.4
Gorai.011G239000 Gossypium raimondii HOM05D002800 ORTHO05D008563 6.3e-18 94.7 64 73.4
Lj1C913T2 Lonicera japonica HOM05D002800 ORTHO05D008563 6.3e-18 94.7 80 67.5
Nn2g10811 Nelumbo nucifera HOM05D002800 ORTHO05D008563 6.3e-18 94.7 65 73.8
Potri.008G039200 Populus trichocarpa HOM05D002800 ORTHO05D008563 6.3e-18 94.7 65 72.3
SalBow4G0916 Salvia bowleyana HOM05D002800 ORTHO05D008563 6.3e-18 94.7 83 61.4
Haze_16886 Corylus avellana HOM05D002800 ORTHO05D008563 8.3e-18 94.4 64 75.0
TAR369G0845 Trochodendron aralioides HOM05D002800 ORTHO05D008563 8.3e-18 94.4 63 76.2
Carub.0006s1576 Capsella rubella HOM05D002800 ORTHO05D008563 1.1e-17 94.0 63 71.4
Lsat_1_v5_gn_2_112341 Lactuca sativa HOM05D002800 ORTHO05D008563 1.1e-17 94.0 65 73.8
QL08p055739 Quercus lobata HOM05D002800 ORTHO05D008563 1.1e-17 94.0 63 74.6
Atru.chr12.759 Acer truncatum HOM05D002800 ORTHO05D008563 1.4e-17 93.6 83 60.2
Thhalv10012819m.g Eutrema salsugineum HOM05D002800 ORTHO05D008563 1.4e-17 93.6 63 73.0
PGR044G1821 Punica granatum HOM05D002800 ORTHO05D008563 1.4e-17 93.6 63 76.2
Atru.chr12.783 Acer truncatum HOM05D002800 ORTHO05D008563 1.8e-17 93.2 83 59.0
AT5G17530 Arabidopsis thaliana HOM05D002800 ORTHO05D008563 1.8e-17 93.2 63 73.0
CANSAT56G2733 Cannabis sativa HOM05D002800 ORTHO05D008563 1.8e-17 93.2 64 71.9
Migut.F01983 Erythranthe guttata HOM05D002800 ORTHO05D008563 1.8e-17 93.2 80 61.2
Oeu031346.1 Olea europaea HOM05D002800 ORTHO05D008563 1.8e-17 93.2 64 73.4
MBI07_g26016_MAGBIO Magnolia biondii HOM05D002800 ORTHO05D008563 2.4e-17 92.8 83 61.4
ECA238G0500 Erigeron canadensis HOM05D002800 ORTHO05D008563 4.1e-17 92.0 65 72.3
ClCG08G007530 Citrullus lanatus HOM05D002800 ORTHO05D008563 5.4e-17 91.7 63 71.4
PSO384G1174 Papaver somniferum HOM05D002800 ORTHO05D008563 5.4e-17 91.7 65 69.2
Sp6g26690 Schrenkiella parvula HOM05D002800 ORTHO05D008563 5.4e-17 91.7 63 71.4
BcaC03g13525 Brassica carinata HOM05D002800 ORTHO05D008563 7.0e-17 91.3 63 71.4
A02p04250 Brassica napus HOM05D002800 ORTHO05D008563 7.0e-17 91.3 63 71.4
C02p09130 Brassica napus HOM05D002800 ORTHO05D008563 7.0e-17 91.3 63 71.4
BolC2t06825H Brassica oleracea HOM05D002800 ORTHO05D008563 7.0e-17 91.3 63 71.4
BraA02t05388Z Brassica rapa HOM05D002800 ORTHO05D008563 7.0e-17 91.3 63 71.4
CiPaw.01G272300 Carya illinoinensis HOM05D002800 ORTHO05D008563 7.0e-17 91.3 71 66.2
FAN03G0883 Fragaria x ananassa HOM05D002800 ORTHO05D008563 7.0e-17 91.3 62 71.0
PSO339G3461 Papaver somniferum HOM05D002800 ORTHO05D008563 9.2e-17 90.9 65 69.2
Sed0015272 Sechium edule HOM05D002800 ORTHO05D008563 9.2e-17 90.9 63 73.0
Sc09g0006270 Simmondsia chinensis HOM05D002800 ORTHO05D008563 9.2e-17 90.9 79 62.0
Hund20229 Selenicereus undatus HOM05D002800 ORTHO05D008563 1.2e-16 90.5 80 60.0
Aa31sc262G50 Aethionema arabicum HOM05D002800 ORTHO05D008563 1.6e-16 90.1 63 71.4
MELO3C019799.2 Cucumis melo HOM05D002800 ORTHO05D008563 1.6e-16 90.1 63 71.4
Glyma.20G179900 Glycine max HOM05D002800 ORTHO05D008563 1.6e-16 90.1 64 70.3
MD01G1108200 Malus domestica HOM05D002800 ORTHO05D008563 1.6e-16 90.1 64 70.3
SHI08822 Sapria himalayana HOM05D002800 ORTHO05D008563 1.6e-16 90.1 67 67.2
AagrBONN_evm.TU.Sc2ySwM_117.2596 Anthoceros agrestis HOM05D002800 ORTHO05D008563 2.7e-16 89.4 64 71.9
Mapoly0011s0106 Marchantia polymorpha HOM05D002800 ORTHO05D008563 2.7e-16 89.4 72 62.5
Nitab4.5_0002524g0030 Nicotiana tabacum HOM05D002800 ORTHO05D008563 3.5e-16 89.0 74 60.8
Potri.010G223000 Populus trichocarpa HOM05D002800 ORTHO05D008563 3.5e-16 89.0 64 70.3
Sabra10G0172400 Salix brachista HOM05D002800 ORTHO05D008563 3.5e-16 89.0 84 57.1
CsaV3_6G036460 Cucumis sativus L. HOM05D002800 ORTHO05D008563 4.5e-16 88.6 63 69.8
Peaxi162Scf01011g00005 Petunia axillaris HOM05D002800 ORTHO05D008563 4.5e-16 88.6 65 69.2
AL6G28620 Arabidopsis lyrata HOM05D002800 ORTHO05D008563 5.9e-16 88.2 86 57.0
SGA_v2.0_scaffold42G16019 Striga asiatica HOM05D002800 ORTHO05D023340 5.9e-16 88.2 61 70.5
CAN.G839.3 Capsicum annuum HOM05D002800 ORTHO05D008563 1.0e-15 87.4 83 55.4
Pp3c20_2120 Physcomitrium patens HOM05D002800 ORTHO05D008563 1.0e-15 87.4 83 60.2
Lj5g0013059 Lotus japonicus HOM05D002800 ORTHO05D008563 1.3e-15 87.0 64 67.2
Lalb_Chr02g0142211 Lupinus albus HOM05D002800 ORTHO05D008563 1.3e-15 87.0 62 69.4
Glyma.10G210700 Glycine max HOM05D002800 ORTHO05D008563 1.7e-15 86.7 64 68.8
ATR0048G007 Amborella trichopoda HOM05D002800 ORTHO05D008563 2.3e-15 86.3 83 56.6
Solyc04g005030.4 Solanum lycopersicum HOM05D002800 ORTHO05D008563 2.3e-15 86.3 89 53.9
VMungo0720G2543 Vigna mungo HOM05D002800 ORTHO05D008563 2.3e-15 86.3 64 65.6
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 5.0e-15 85.1 97 50.5
Nitab4.5_0001053g0090 Nicotiana tabacum HOM05D002800 ORTHO05D008563 5.0e-15 85.1 64 67.2
Ah.08g209400 Amaranthus hybridus HOM05D002800 ORTHO05D008563 6.6e-15 84.7 65 67.7
EL10Ac7g17090 Beta vulgaris HOM05D002800 ORTHO05D008563 8.6e-15 84.3 65 63.1
Psat6g183400 Pisum sativum HOM05D002800 ORTHO05D008563 8.6e-15 84.3 64 67.2
PGSC0003DMG400001912 Solanum tuberosum HOM05D002800 ORTHO05D008563 1.1e-14 84.0 80 55.0
TPR.G1920 Trifolium pratense HOM05D002800 ORTHO05D008563 1.1e-14 84.0 70 61.4
AUR62006403 Chenopodium quinoa HOM05D002800 ORTHO05D008563 1.9e-14 83.2 64 65.6
arahy.Tifrunner.gnm1.ann1.681S5P Arachis hypogaea HOM05D002800 ORTHO05D008563 2.5e-14 82.8 64 64.1
arahy.Tifrunner.gnm1.ann1.KPC10E Arachis hypogaea HOM05D002800 ORTHO05D008563 2.5e-14 82.8 64 64.1
Phvul.007G094900 Phaseolus vulgaris HOM05D002800 ORTHO05D008563 4.3e-14 82.0 64 62.5
Medtr1g094980 Medicago truncatula HOM05D002800 ORTHO05D008563 9.5e-14 80.9 83 51.8
CSS0018456 Camellia sinensis var. sinensis HOM05D002800 ORTHO05D021906 1.8e-12 76.6 53 75.5
SMO144G0140 Selaginella moellendorffii HOM05D002800 ORTHO05D008563 1.8e-12 76.6 71 60.6
CSS0006255 Camellia sinensis var. sinensis HOM05D002800 ORTHO05D008563 2.3e-12 76.3 53 73.6
Lalb_Chr06g0162361 Lupinus albus HOM05D002800 ORTHO05D008563 1.7e-10 70.1 54 66.7
unitig_8.g4691 Utricularia gibba HOM05D002800 ORTHO05D008563 1.1e-09 67.4 58 60.3
C05p49990 Brassica napus HOM05D002800 ORTHO05D021906 2.7e-08 62.8 48 64.6
MCO09G500 Micromonas commoda HOM05D002800 ORTHO05D008563 1.0e-07 60.8 77 44.2
MD07G1174100 Malus domestica HOM05D002800 ORTHO05D036592 3.0e-07 59.3 36 75.0
PRCOL_00000723 Prasinoderma coloniale HOM05D002800 ORTHO05D008563 4.3e-06 55.5 66 43.9
ClCG07G006020 Citrullus lanatus HOM05D002800 ORTHO05D009276 7.3e-06 54.7 77 40.3
AagrBONN_evm.TU.Sc2ySwM_340.254 Anthoceros agrestis HOM05D002800 ORTHO05D009276 9.5e-06 54.3 60 45.0


User provided reference genes

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