Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 1.3e-114 416.4 205 100.0
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 1.3e-114 416.4 205 100.0
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 1.3e-114 416.4 205 100.0
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 1.3e-114 416.4 205 100.0
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 1.2e-96 356.7 174 99.4
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 1.0e-95 353.6 174 98.9
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 4.0e-84 315.1 171 86.5
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 4.0e-84 315.1 178 83.7
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 5.3e-84 314.7 172 86.6
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 6.9e-84 314.3 174 84.5
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 9.0e-84 313.9 172 86.0
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 2.6e-83 312.4 172 86.0
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 3.4e-83 312.0 174 83.9
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 3.4e-83 312.0 172 85.5
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 3.4e-83 312.0 191 79.1
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 4.5e-83 311.6 174 84.5
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 4.5e-83 311.6 174 83.9
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 4.5e-83 311.6 172 85.5
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 4.5e-83 311.6 172 85.5
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 5.8e-83 311.2 191 78.5
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 5.8e-83 311.2 172 85.5
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 5.8e-83 311.2 172 84.3
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 9.9e-83 310.5 172 84.9
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 9.9e-83 310.5 172 85.5
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 1.3e-82 310.1 171 87.1
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 1.7e-82 309.7 174 82.8
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 2.2e-82 309.3 172 84.9
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 2.9e-82 308.9 172 84.9
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 2.9e-82 308.9 174 83.3
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 2.9e-82 308.9 191 78.0
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 3.8e-82 308.5 191 78.0
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 3.8e-82 308.5 172 84.3
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 3.8e-82 308.5 172 83.7
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 6.4e-82 307.8 172 86.0
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 6.4e-82 307.8 174 82.8
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 6.4e-82 307.8 174 82.8
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 6.4e-82 307.8 172 84.3
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 6.4e-82 307.8 172 84.3
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 6.4e-82 307.8 172 83.7
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 8.4e-82 307.4 174 82.8
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 1.1e-81 307.0 172 83.7
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 1.1e-81 307.0 172 83.7
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 1.1e-81 307.0 172 84.9
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 1.1e-81 307.0 172 85.5
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 1.4e-81 306.6 172 84.3
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.4e-81 306.6 172 83.1
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.4e-81 306.6 172 86.0
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 1.4e-81 306.6 172 84.9
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 1.9e-81 306.2 172 83.7
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.9e-81 306.2 172 83.7
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 1.9e-81 306.2 172 83.7
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 3.2e-81 305.4 172 82.6
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 7.1e-81 304.3 172 85.5
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 9.3e-81 303.9 172 84.3
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 9.3e-81 303.9 172 83.1
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 9.3e-81 303.9 171 83.0
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 9.3e-81 303.9 171 82.5
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 9.3e-81 303.9 176 81.2
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.2e-80 303.5 172 83.1
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 1.2e-80 303.5 174 82.8
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 1.6e-80 303.1 172 84.3
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 2.1e-80 302.8 174 81.6
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 2.1e-80 302.8 174 81.6
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 2.7e-80 302.4 172 82.6
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 3.5e-80 302.0 174 81.6
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 3.5e-80 302.0 174 81.6
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 3.5e-80 302.0 171 83.6
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 4.6e-80 301.6 172 82.0
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 4.6e-80 301.6 174 81.0
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 4.6e-80 301.6 172 82.6
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 6.0e-80 301.2 172 83.1
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 6.0e-80 301.2 171 84.2
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 7.9e-80 300.8 172 83.1
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 1.0e-79 300.4 172 84.3
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 1.3e-79 300.1 171 83.6
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 1.8e-79 299.7 172 82.6
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 3.9e-79 298.5 174 80.5
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 3.9e-79 298.5 172 82.6
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 5.1e-79 298.1 170 85.3
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 8.7e-79 297.4 174 82.2
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 2.5e-78 295.8 174 81.0
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 3.3e-78 295.4 174 79.9
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 4.3e-78 295.0 172 81.4
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 5.6e-78 294.7 174 80.5
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 5.6e-78 294.7 171 81.9
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 1.3e-77 293.5 174 80.5
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 2.1e-77 292.7 171 81.9
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 2.1e-77 292.7 172 80.2
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 6.2e-77 291.2 172 80.2
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 8.1e-77 290.8 172 80.2
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 2.0e-75 286.2 173 77.5
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 2.0e-75 286.2 169 80.5
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 4.5e-75 285.0 173 76.9
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 2.2e-74 282.7 224 63.8
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 2.9e-74 282.3 218 67.0
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 6.4e-74 281.2 175 76.6
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 6.4e-74 281.2 184 73.9
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 2.4e-73 279.3 158 84.8
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.3e-71 273.5 157 85.4
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 6.7e-71 271.2 136 97.8
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 2.6e-67 259.2 148 84.5
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 2.6e-67 259.2 172 68.6
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 3.4e-67 258.8 170 74.7
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 3.4e-67 258.8 172 70.3
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 2.9e-66 255.8 172 68.6
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 4.2e-65 251.9 150 80.7
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 2.1e-64 249.6 136 88.2
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 2.1e-64 249.6 174 69.5
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 1.5e-62 243.4 138 88.4
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 9.0e-60 234.2 146 78.1
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 3.8e-58 228.8 169 68.0
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 6.5e-58 228.0 130 83.8
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 3.2e-57 225.7 133 81.2
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 2.1e-56 223.0 175 62.9
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 3.6e-56 222.2 126 81.7
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 1.3e-55 220.3 169 66.9
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 1.8e-55 219.9 130 80.8
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 3.0e-55 219.2 126 81.7
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 3.0e-55 219.2 126 81.7
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 3.9e-55 218.8 127 81.1
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 8.7e-55 217.6 129 79.8
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 2.8e-53 212.6 129 79.1
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.4e-51 205.7 162 65.4
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 2.1e-48 196.4 126 77.0
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 3.3e-46 189.1 132 69.7
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 6.9e-44 181.4 128 69.5
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 2.0e-43 179.9 126 69.0
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 9.4e-41 171.0 130 67.7
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.1e-38 164.1 92 84.8
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 8.2e-37 157.9 91 83.5
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 1.6e-35 153.7 93 79.6
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.5e-35 152.5 94 78.7
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.0e-34 151.0 104 71.2
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.0e-34 151.0 101 77.2
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.7e-34 150.2 95 78.9
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.2e-34 149.8 93 76.3
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 8.5e-34 147.9 93 76.3
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 4.7e-32 142.1 67 98.5
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.5e-30 137.1 79 77.2
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 5.7e-30 135.2 88 71.6
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 1.4e-28 130.6 73 86.3
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.0e-27 126.7 77 81.8
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 1.1e-25 120.9 98 61.2
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 1.2e-24 117.5 190 36.8
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.6e-24 117.1 79 69.6
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 1.5e-17 94.0 90 53.3
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 2.3e-15 86.7 56 71.4
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 7.3e-09 65.1 35 74.3


User provided reference genes

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