Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb238610 Zea mays HOM05D004997 ORTHO05D005921 4.8e-56 221.1 124 100.0
Os02g0246300 Oryza sativa ssp. japonica HOM05D004997 ORTHO05D005921 4.3e-49 198.0 132 86.4
HanXRQChr01g0020611 Helianthus annuus HOM05D004997 ORTHO05D005921 1.4e-39 166.4 133 74.4
HanXRQChr11g0340951 Helianthus annuus HOM05D004997 ORTHO05D005921 2.4e-39 165.6 121 76.0
CANSAT35G1260 Cannabis sativa HOM05D004997 ORTHO05D005921 2.0e-38 162.5 130 73.1
MD10G1262900 Malus domestica HOM05D004997 ORTHO05D005921 2.0e-38 162.5 130 72.3
Potri.004G131900 Populus trichocarpa HOM05D004997 ORTHO05D005921 2.0e-38 162.5 121 74.4
CiPaw.10G092400 Carya illinoinensis HOM05D004997 ORTHO05D005921 4.5e-38 161.4 124 71.0
FAN11G3072 Fragaria x ananassa HOM05D004997 ORTHO05D005921 4.5e-38 161.4 130 71.5
MD05G1284500 Malus domestica HOM05D004997 ORTHO05D005921 7.7e-38 160.6 129 69.8
Ciclev10017164m.g Citrus clementina HOM05D004997 ORTHO05D005921 1.0e-37 160.2 121 72.7
Cfa000953 Carpinus fangiana HOM05D004997 ORTHO05D005921 1.3e-37 159.8 124 70.2
FvH4_3g05660 Fragaria vesca HOM05D004997 ORTHO05D005921 1.3e-37 159.8 130 70.8
THA.LOC104814295 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 1.3e-37 159.8 124 71.0
ECA233G0220 Erigeron canadensis HOM05D004997 ORTHO05D005921 2.2e-37 159.1 121 72.7
THA.LOC104812669 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 3.8e-37 158.3 124 70.2
SEGI_33388 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 5.0e-37 157.9 124 73.4
RcHm_v2.0_Chr5g0013981 Rosa chinensis HOM05D004997 ORTHO05D005921 6.5e-37 157.5 121 71.1
MSTRG.16239 Avicennia marina HOM05D004997 ORTHO05D005921 8.5e-37 157.1 121 71.1
TAR626G0896 Trochodendron aralioides HOM05D004997 ORTHO05D005921 8.5e-37 157.1 121 71.1
MSTRG.7483 Avicennia marina HOM05D004997 ORTHO05D005921 1.1e-36 156.8 121 71.1
FAN21G2809 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.1e-36 156.8 130 70.0
TWI38G0351 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 1.4e-36 156.4 120 70.8
HPP92_006252 Vanilla planifolia HOM05D004997 ORTHO05D005921 1.4e-36 156.4 120 70.0
Actinidia07691 Actinidia chinensis HOM05D004997 ORTHO05D005921 1.9e-36 156.0 121 71.1
MELO3C002717.2 Cucumis melo HOM05D004997 ORTHO05D005921 1.9e-36 156.0 124 68.5
Eucgr.E02397 Eucalyptus grandis HOM05D004997 ORTHO05D005921 1.9e-36 156.0 124 69.4
Prupe.4G079900 Prunus persica HOM05D004997 ORTHO05D005921 1.9e-36 156.0 130 69.2
Sed0005528 Sechium edule HOM05D004997 ORTHO05D005921 2.5e-36 155.6 124 69.4
SGA_v2.0_scaffold1G00167 Striga asiatica HOM05D004997 ORTHO05D005921 2.5e-36 155.6 120 70.8
Migut.M00914 Erythranthe guttata HOM05D004997 ORTHO05D005921 3.2e-36 155.2 121 70.2
PSO384G3576 Papaver somniferum HOM05D004997 ORTHO05D005921 3.2e-36 155.2 124 67.7
Sed0006544 Sechium edule HOM05D004997 ORTHO05D005921 3.2e-36 155.2 124 68.5
Carub.0001s2824 Capsella rubella HOM05D004997 ORTHO05D005921 4.2e-36 154.8 124 68.5
Gohir.D05G151300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 4.2e-36 154.8 125 69.6
Gorai.009G155300 Gossypium raimondii HOM05D004997 ORTHO05D005921 4.2e-36 154.8 125 69.6
Gorai.011G043400 Gossypium raimondii HOM05D004997 ORTHO05D005921 4.2e-36 154.8 125 68.8
PSO339G4484 Papaver somniferum HOM05D004997 ORTHO05D005921 4.2e-36 154.8 124 67.7
TWI38G1166 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 4.2e-36 154.8 121 69.4
AL1G43880 Arabidopsis lyrata HOM05D004997 ORTHO05D005921 5.5e-36 154.5 124 68.5
CiPaw.09G124400 Carya illinoinensis HOM05D004997 ORTHO05D005921 7.2e-36 154.1 124 66.1
CDE09G0791 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 7.2e-36 154.1 130 67.7
Dinv32261 Davidia involucrata HOM05D004997 ORTHO05D005921 7.2e-36 154.1 120 70.0
Gohir.A10G040300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 7.2e-36 154.1 125 68.0
Psat2g084800 Pisum sativum HOM05D004997 ORTHO05D005921 7.2e-36 154.1 119 70.6
CSS0020008 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 9.4e-36 153.7 121 69.4
CARHR029400 Cardamine hirsuta HOM05D004997 ORTHO05D005921 9.4e-36 153.7 124 68.5
CDE02G0055 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 9.4e-36 153.7 121 71.1
Medtr5g055650 Medicago truncatula HOM05D004997 ORTHO05D005921 9.4e-36 153.7 119 69.7
Nn4g24866 Nelumbo nucifera HOM05D004997 ORTHO05D005921 9.4e-36 153.7 124 66.9
Sopen08g006800 Solanum pennellii HOM05D004997 ORTHO05D005921 1.2e-35 153.3 130 66.9
Thecc.06G151500 Theobroma cacao HOM05D004997 ORTHO05D005921 1.2e-35 153.3 125 68.8
Lalb_Chr05g0222161 Lupinus albus HOM05D004997 ORTHO05D005921 1.6e-35 152.9 121 68.6
Duzib192G0549 Durio zibethinus HOM05D004997 ORTHO05D005921 2.1e-35 152.5 127 69.3
Lj5g0010316 Lotus japonicus HOM05D004997 ORTHO05D005921 2.1e-35 152.5 119 68.9
GSVIVG01021444001 Vitis vinifera HOM05D004997 ORTHO05D005921 2.1e-35 152.5 118 69.5
Solyc08g016420.3 Solanum lycopersicum HOM05D004997 ORTHO05D005921 2.7e-35 152.1 130 66.2
Aqoxy3G00593 Aquilegia oxysepala HOM05D004997 ORTHO05D005921 3.6e-35 151.8 130 68.5
Lj4g0009583 Lotus japonicus HOM05D004997 ORTHO05D005921 3.6e-35 151.8 119 68.9
Phvul.002G321900 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 3.6e-35 151.8 119 68.9
BcaC06g35482 Brassica carinata HOM05D004997 ORTHO05D005921 4.7e-35 151.4 125 67.2
BolC7t42045H Brassica oleracea HOM05D004997 ORTHO05D005921 4.7e-35 151.4 125 67.2
Gohir.A05G148700 Gossypium hirsutum HOM05D004997 ORTHO05D005921 4.7e-35 151.4 125 68.8
AT1G29990 Arabidopsis thaliana HOM05D004997 ORTHO05D005921 6.1e-35 151.0 126 68.3
BcaB03g13847 Brassica carinata HOM05D004997 ORTHO05D005921 7.9e-35 150.6 128 67.2
Gohir.D10G041200 Gossypium hirsutum HOM05D004997 ORTHO05D005921 7.9e-35 150.6 125 68.0
unitig_32.g11442 Utricularia gibba HOM05D004997 ORTHO05D005921 7.9e-35 150.6 120 69.2
Sp1g25870 Schrenkiella parvula HOM05D004997 ORTHO05D005921 1.4e-34 149.8 120 67.5
Gorai.002G185400 Gossypium raimondii HOM05D004997 ORTHO05D005921 2.3e-34 149.1 127 66.9
Glyma.12G006600 Glycine max HOM05D004997 ORTHO05D005921 3.0e-34 148.7 119 67.2
Glyma.08G046600 Glycine max HOM05D004997 ORTHO05D005921 3.9e-34 148.3 129 65.9
VMungo0251G3606 Vigna mungo HOM05D004997 ORTHO05D005921 3.9e-34 148.3 119 67.2
Gohir.D01G100600 Gossypium hirsutum HOM05D004997 ORTHO05D005921 6.7e-34 147.5 120 69.2
PGR042G1500 Punica granatum HOM05D004997 ORTHO05D005921 6.7e-34 147.5 124 66.1
SGA_v2.0_scaffold333G48998 Striga asiatica HOM05D004997 ORTHO05D005921 6.7e-34 147.5 134 64.2
BcaB07g32600 Brassica carinata HOM05D004997 ORTHO05D005921 3.3e-33 145.2 124 64.5
A09p36530 Brassica napus HOM05D004997 ORTHO05D005921 3.3e-33 145.2 124 64.5
BraA09t39174Z Brassica rapa HOM05D004997 ORTHO05D005921 3.3e-33 145.2 124 64.5
Mapoly0006s0079 Marchantia polymorpha HOM05D004997 ORTHO05D005921 3.3e-33 145.2 118 69.5
C05p28750 Brassica napus HOM05D004997 ORTHO05D005921 5.7e-33 144.4 124 64.5
BolC5t31593H Brassica oleracea HOM05D004997 ORTHO05D005921 5.7e-33 144.4 124 64.5
FAN25G0101 Fragaria x ananassa HOM05D004997 ORTHO05D005921 5.7e-33 144.4 138 61.6
Gorai.002G125400 Gossypium raimondii HOM05D004997 ORTHO05D005921 5.7e-33 144.4 120 67.5
Thhalv10009093m.g Eutrema salsugineum HOM05D004997 ORTHO05D005921 1.7e-32 142.9 124 63.7
Atru.chr10.1243 Acer truncatum HOM05D004997 ORTHO05D005921 2.2e-32 142.5 108 72.2
Pp3c22_1770 Physcomitrium patens HOM05D004997 ORTHO05D005921 2.2e-32 142.5 121 64.5
AagrBONN_evm.TU.Sc2ySwM_344.2433 Anthoceros agrestis HOM05D004997 ORTHO05D005921 3.7e-32 141.7 124 64.5
arahy.Tifrunner.gnm1.ann1.06CE9J Arachis hypogaea HOM05D004997 ORTHO05D005921 3.7e-32 141.7 132 61.4
Manes.11G058500 Manihot esculenta HOM05D004997 ORTHO05D005921 4.8e-32 141.4 118 67.8
Ah.09g232610 Amaranthus hybridus HOM05D000413 ORTHO05D000292 8.2e-32 140.6 117 65.0
A07p10100 Brassica napus HOM05D004997 ORTHO05D005921 8.2e-32 140.6 129 63.6
TPR.G13287 Trifolium pratense HOM05D004997 ORTHO05D005921 2.4e-31 139.0 115 67.8
CAN.G134.135 Capsicum annuum HOM05D004997 ORTHO05D000105 5.3e-31 137.9 111 67.6
CsaV3_1G032650 Cucumis sativus L. HOM05D004997 ORTHO05D005921 5.3e-31 137.9 112 67.9
MBI07_g26358_MAGBIO Magnolia biondii HOM05D004997 ORTHO05D005921 7.0e-31 137.5 102 74.5
Duzib235G0692 Durio zibethinus HOM05D004997 ORTHO05D005921 9.1e-31 137.1 112 68.8
BraA07t28803Z Brassica rapa HOM05D004997 ORTHO05D005921 5.9e-30 134.4 121 62.8
CAN.G134.136 Capsicum annuum HOM05D004997 ORTHO05D005921 5.9e-30 134.4 111 66.7
Lsat_1_v5_gn_1_91801 Lactuca sativa HOM05D004997 ORTHO05D005921 1.0e-29 133.7 100 72.0
ClCG03G007080 Citrullus lanatus HOM05D004997 ORTHO05D005921 1.3e-29 133.3 179 48.6
ATR0743G157 Amborella trichopoda HOM05D004997 ORTHO05D005921 1.7e-29 132.9 109 65.1
DCAR_027919 Daucus carota HOM05D000413 ORTHO05D000292 8.5e-29 130.6 121 63.6
BcaC05g27010 Brassica carinata HOM05D004997 ORTHO05D005921 1.5e-28 129.8 112 64.3
FAN16G0953 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.9e-28 129.4 99 70.7
SMO367G0874 Selaginella moellendorffii HOM05D004997 ORTHO05D005921 1.9e-28 129.4 109 64.2
Hund21531 Selenicereus undatus HOM05D004997 ORTHO05D005921 1.9e-28 129.4 118 61.9
Prupe.3G104900 Prunus persica HOM05D004997 ORTHO05D005921 2.5e-28 129.0 99 71.7
CSS0046404 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 7.2e-28 127.5 99 71.7
Rhsim13G0211800 Rhododendron simsii HOM05D004997 ORTHO05D005921 9.4e-28 127.1 108 68.5
arahy.Tifrunner.gnm1.ann1.FF119L Arachis hypogaea HOM05D004997 ORTHO05D005921 1.2e-27 126.7 134 56.0
C07p15580 Brassica napus HOM05D004997 ORTHO05D005921 1.6e-27 126.3 121 60.3
Cc02_g37190 Coffea canephora HOM05D004997 ORTHO05D005921 2.1e-27 125.9 98 69.4
QL05p058391 Quercus lobata HOM05D004997 ORTHO05D005921 3.6e-27 125.2 128 58.6
Aa31LG6G5670 Aethionema arabicum HOM05D004997 ORTHO05D005921 8.0e-27 124.0 126 55.6
SEGI_19850 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 1.1e-25 120.2 94 74.5
COL.COLO4_31081 Corchorus olitorius HOM05D004997 ORTHO05D005921 7.5e-25 117.5 87 73.6
vmacro04021 Vaccinium macrocarpon HOM05D004997 ORTHO05D005921 1.3e-24 116.7 87 72.4
Peaxi162Scf01211g00142 Petunia axillaris HOM05D004997 ORTHO05D005921 1.7e-24 116.3 84 72.6
Oeu052376.1 Olea europaea HOM05D004997 ORTHO05D005921 2.8e-24 115.5 88 71.6
Zm00001eb151600 Zea mays HOM05D000394 ORTHO05D016690 2.8e-24 115.5 64 95.3
Zm00001eb258640 Zea mays HOM05D004997 ORTHO05D005921 2.8e-24 115.5 67 91.0
Oeu034156.1 Olea europaea HOM05D004997 ORTHO05D005921 3.7e-24 115.2 88 71.6
CAN.G134.137 Capsicum annuum HOM05D004997 ORTHO05D005921 4.8e-24 114.8 91 67.0
PGSC0003DMG400009647 Solanum tuberosum HOM05D004997 ORTHO05D005921 4.8e-24 114.8 91 68.1
Phvul.009G128800 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 1.1e-23 113.6 82 72.0
EL10Ac8g19712 Beta vulgaris HOM05D004997 ORTHO05D005921 1.8e-23 112.8 161 46.0
Zm00001eb310800 Zea mays HOM05D000394 ORTHO05D016690 1.8e-23 112.8 64 92.2
AUR62039776 Chenopodium quinoa HOM05D004997 ORTHO05D005921 2.4e-23 112.5 84 71.4
Zm00001eb225310 Zea mays HOM05D000901 ORTHO05D005921 2.4e-23 112.5 66 90.9
arahy.Tifrunner.gnm1.ann1.7IX92P Arachis hypogaea HOM05D004997 ORTHO05D005921 3.1e-23 112.1 92 66.3
Sc17g0004940 Simmondsia chinensis HOM05D004997 ORTHO05D005921 5.3e-23 111.3 88 68.2
Zm00001eb139040 Zea mays HOM05D000901 ORTHO05D005921 9.1e-23 110.5 73 84.9
Zm00001eb269380 Zea mays HOM05D000901 ORTHO05D005921 1.2e-22 110.2 72 81.9
CAN.G3523.1 Capsicum annuum HOM05D004997 ORTHO05D005921 2.0e-22 109.4 91 65.9
Dinv30737 Davidia involucrata HOM05D004997 ORTHO05D005921 2.7e-22 109.0 88 69.3
QL06p022817 Quercus lobata HOM05D004997 ORTHO05D005921 2.2e-21 105.9 121 53.7
Zm00001eb344510 Zea mays HOM05D000901 ORTHO05D000768 3.8e-21 105.1 62 90.3
Actinidia39569 Actinidia chinensis HOM05D004997 ORTHO05D005921 1.1e-20 103.6 111 56.8
Haze_05586 Corylus avellana HOM05D004997 ORTHO05D005921 1.4e-18 96.7 71 73.2
Sabra04G0085700 Salix brachista HOM05D004997 ORTHO05D005921 1.4e-18 96.7 68 75.0
AUR62030207 Chenopodium quinoa HOM05D004997 ORTHO05D005921 1.8e-18 96.3 61 82.0
CDE02G2003 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 4.0e-18 95.1 88 63.6
SalBow8G3614 Salvia bowleyana HOM05D004997 ORTHO05D005921 8.8e-18 94.0 99 56.6
Lsat_1_v5_gn_5_30841 Lactuca sativa HOM05D004997 ORTHO05D005921 9.8e-17 90.5 80 65.0
Nitab4.5_0000348g0240 Nicotiana tabacum HOM05D004997 ORTHO05D005921 2.2e-16 89.4 65 73.8
Nitab4.5_0010327g0020 Nicotiana tabacum HOM05D004997 ORTHO05D005921 2.2e-16 89.4 65 73.8
Gohir.D01G149300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 2.8e-16 89.0 81 60.5
PRCOL_00000028 Prasinoderma coloniale HOM05D004997 ORTHO05D005921 3.7e-16 88.6 121 43.0
Manes.09G021201 Manihot esculenta HOM05D004997 ORTHO05D005921 1.8e-15 86.3 107 53.3
MCO01G210 Micromonas commoda HOM05D004997 ORTHO05D005921 5.9e-14 81.3 121 38.0
Cre12.g502750 Chlamydomonas reinhardtii HOM05D004997 ORTHO05D005921 5.0e-13 78.2 110 37.3
Haze_05599 Corylus avellana HOM05D004997 ORTHO05D005921 2.7e-11 72.4 51 74.5
CBR_g48714 Chara braunii HOM05D004997 ORTHO05D005921 1.4e-10 70.1 117 42.7
Cfa022129 Carpinus fangiana HOM05D004997 ORTHO05D005921 3.7e-08 62.0 124 31.5


User provided reference genes

Program Settings