Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb237180 Zea mays HOM05D005946 ORTHO05D007340 8.0e-35 149.8 73 100.0
Os02g0299600 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 3.1e-31 137.9 70 92.9
CAN.G1089.18 Capsicum annuum HOM05D005946 ORTHO05D007340 5.5e-28 127.1 71 83.1
CAN.G843.5 Capsicum annuum HOM05D005946 ORTHO05D007340 5.5e-28 127.1 71 81.7
EL10Ac6g13474 Beta vulgaris HOM05D005946 ORTHO05D007340 1.6e-27 125.6 70 81.4
Eucgr.B03471 Eucalyptus grandis HOM05D005946 ORTHO05D007340 1.6e-27 125.6 70 82.9
Cc00_g13530 Coffea canephora HOM05D005946 ORTHO05D007340 2.1e-27 125.2 70 82.9
Nitab4.5_0001841g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 2.7e-27 124.8 70 82.9
Solyc06g068780.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 2.7e-27 124.8 70 82.9
Sopen06g026060 Solanum pennellii HOM05D005946 ORTHO05D007340 2.7e-27 124.8 70 82.9
PGSC0003DMG400025576 Solanum tuberosum HOM05D005946 ORTHO05D007340 2.7e-27 124.8 70 82.9
Nitab4.5_0008858g0060 Nicotiana tabacum HOM05D005946 ORTHO05D007340 3.6e-27 124.4 73 78.1
Solyc03g118140.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 3.6e-27 124.4 70 81.4
Sopen03g037060 Solanum pennellii HOM05D005946 ORTHO05D007340 3.6e-27 124.4 70 81.4
A10p19740 Brassica napus HOM05D005946 ORTHO05D007340 4.7e-27 124.0 72 76.4
C09p56030 Brassica napus HOM05D005946 ORTHO05D007340 4.7e-27 124.0 72 76.4
BolC9t58470H Brassica oleracea HOM05D005946 ORTHO05D007340 4.7e-27 124.0 72 76.4
BraA10t44050Z Brassica rapa HOM05D005946 ORTHO05D007340 4.7e-27 124.0 72 76.4
Rhsim07G0080600 Rhododendron simsii HOM05D005946 ORTHO05D007340 4.7e-27 124.0 70 81.4
TWI36G1309 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 4.7e-27 124.0 70 81.4
BolC3t13619H Brassica oleracea HOM05D005946 ORTHO05D007340 6.1e-27 123.6 71 77.5
BraA03t10302Z Brassica rapa HOM05D005946 ORTHO05D007340 6.1e-27 123.6 71 77.5
PGR004G0564 Punica granatum HOM05D005946 ORTHO05D007340 8.0e-27 123.2 70 81.4
TWI14G1045 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 8.0e-27 123.2 70 81.4
TWI36G1530 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 8.0e-27 123.2 70 81.4
CDE10G0705 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 1.0e-26 122.9 68 82.4
Manes.12G013300 Manihot esculenta HOM05D005946 ORTHO05D007340 1.4e-26 122.5 70 80.0
Manes.13G017850 Manihot esculenta HOM05D005946 ORTHO05D007340 1.4e-26 122.5 70 80.0
CARHR192660 Cardamine hirsuta HOM05D005946 ORTHO05D007340 1.8e-26 122.1 70 78.6
CiPaw.05G112200 Carya illinoinensis HOM05D005946 ORTHO05D007340 1.8e-26 122.1 70 81.4
CiPaw.06G100600 Carya illinoinensis HOM05D005946 ORTHO05D007340 1.8e-26 122.1 70 80.0
Duzib251G0400 Durio zibethinus HOM05D005946 ORTHO05D007340 1.8e-26 122.1 70 81.4
Thhalv10015210m.g Eutrema salsugineum HOM05D005946 ORTHO05D007340 1.8e-26 122.1 70 78.6
Gohir.A03G127300 Gossypium hirsutum HOM05D005946 ORTHO05D007340 1.8e-26 122.1 70 81.4
Gorai.005G169000 Gossypium raimondii HOM05D005946 ORTHO05D007340 1.8e-26 122.1 70 81.4
Sp6g24240 Schrenkiella parvula HOM05D005946 ORTHO05D007340 1.8e-26 122.1 70 78.6
THA.LOC109116592 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 1.8e-26 122.1 70 78.6
Thecc.02G276900 Theobroma cacao HOM05D005946 ORTHO05D007340 1.8e-26 122.1 70 81.4
Actinidia27305 Actinidia chinensis HOM05D005946 ORTHO05D007340 3.0e-26 121.3 68 82.4
Aa31LG10G8610 Aethionema arabicum HOM05D005946 ORTHO05D007340 3.0e-26 121.3 70 78.6
ECA246G0405 Erigeron canadensis HOM05D005946 ORTHO05D007340 3.0e-26 121.3 70 78.6
HanXRQChr17g0534681 Helianthus annuus HOM05D005946 ORTHO05D007340 3.0e-26 121.3 70 78.6
Lsat_1_v5_gn_6_8840 Lactuca sativa HOM05D005946 ORTHO05D007340 3.0e-26 121.3 70 78.6
A03p09890 Brassica napus HOM05D005946 ORTHO05D007340 4.0e-26 120.9 70 77.1
Dinv14819 Davidia involucrata HOM05D005946 ORTHO05D007340 4.0e-26 120.9 70 81.4
Duzib248G1204 Durio zibethinus HOM05D005946 ORTHO05D007340 4.0e-26 120.9 70 80.0
AL6G31720 Arabidopsis lyrata HOM05D005946 ORTHO05D007340 5.2e-26 120.6 70 78.6
AT5G20165 Arabidopsis thaliana HOM05D005946 ORTHO05D007340 5.2e-26 120.6 70 78.6
CANSAT21G2474 Cannabis sativa HOM05D005946 ORTHO05D007340 5.2e-26 120.6 70 78.6
Carub.0006s1856 Capsella rubella HOM05D005946 ORTHO05D007340 5.2e-26 120.6 70 78.6
Lsat_1_v5_gn_3_12801 Lactuca sativa HOM05D005946 ORTHO05D007340 5.2e-26 120.6 70 78.6
Potri.008G176801 Populus trichocarpa HOM05D005946 ORTHO05D007340 5.2e-26 120.6 70 78.6
Potri.010G058300 Populus trichocarpa HOM05D005946 ORTHO05D007340 5.2e-26 120.6 70 78.6
vmacro01071 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 5.2e-26 120.6 70 78.6
HanXRQChr07g0190741 Helianthus annuus HOM05D005946 ORTHO05D007340 6.8e-26 120.2 70 78.6
MBI07_g24770_MAGBIO Magnolia biondii HOM05D005946 ORTHO05D007340 6.8e-26 120.2 72 77.8
Ciclev10033263m.g Citrus clementina HOM05D005946 ORTHO05D007340 8.8e-26 119.8 70 80.0
Nn3g18946 Nelumbo nucifera HOM05D005946 ORTHO05D007340 8.8e-26 119.8 68 77.9
Rhsim12G0028200 Rhododendron simsii HOM05D005946 ORTHO05D007340 1.2e-25 119.4 70 78.6
Gohir.D02G150700 Gossypium hirsutum HOM05D005946 ORTHO05D007340 1.5e-25 119.0 70 80.0
TAR374G1140 Trochodendron aralioides HOM05D005946 ORTHO05D007340 1.5e-25 119.0 70 77.1
Migut.B01726 Erythranthe guttata HOM05D005946 ORTHO05D007340 2.6e-25 118.2 70 78.6
Gorai.002G192200 Gossypium raimondii HOM05D005946 ORTHO05D007340 2.6e-25 118.2 70 78.6
SEGI_28367 Sequoiadendron giganteum HOM05D005946 ORTHO05D007340 2.6e-25 118.2 70 78.6
PSO063G0123 Papaver somniferum HOM05D005946 ORTHO05D007340 3.4e-25 117.9 70 75.7
PSO170G6765 Papaver somniferum HOM05D005946 ORTHO05D007340 3.4e-25 117.9 70 75.7
Prupe.5G124600 Prunus persica HOM05D005946 ORTHO05D007340 3.4e-25 117.9 70 80.0
PGR102G2803 Punica granatum HOM05D005946 ORTHO05D007340 3.4e-25 117.9 70 75.7
Sed0027475 Sechium edule HOM05D005946 ORTHO05D007340 3.4e-25 117.9 70 77.1
TPR.G21803 Trifolium pratense HOM05D005946 ORTHO05D007340 3.4e-25 117.9 70 77.1
CSS0024427 Camellia sinensis var. sinensis HOM05D005946 ORTHO05D007340 4.4e-25 117.5 73 74.0
Phvul.001G260400 Phaseolus vulgaris HOM05D005946 ORTHO05D007340 4.4e-25 117.5 70 75.7
arahy.Tifrunner.gnm1.ann1.55451G Arachis hypogaea HOM05D005946 ORTHO05D007340 5.7e-25 117.1 70 75.7
Mapoly0008s0042 Marchantia polymorpha HOM05D005946 ORTHO05D007340 5.7e-25 117.1 72 76.4
Lj4g0023384 Lotus japonicus HOM05D005946 ORTHO05D007340 7.5e-25 116.7 70 77.1
MD14G1133000 Malus domestica HOM05D005946 ORTHO05D007340 9.8e-25 116.3 70 77.1
Medtr3g085600 Medicago truncatula HOM05D005946 ORTHO05D007340 9.8e-25 116.3 70 75.7
Glyma.11G249100 Glycine max HOM05D005946 ORTHO05D007340 1.3e-24 115.9 70 75.7
Os05g0251500 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 1.3e-24 115.9 70 77.1
MSTRG.28215 Avicennia marina HOM05D005946 ORTHO05D007340 1.7e-24 115.5 70 75.7
Migut.N01429 Erythranthe guttata HOM05D005946 ORTHO05D007340 1.7e-24 115.5 70 77.1
FvH4_5g11580 Fragaria vesca HOM05D005946 ORTHO05D007340 1.7e-24 115.5 70 77.1
Lalb_Chr05g0223941 Lupinus albus HOM05D005946 ORTHO05D007340 1.7e-24 115.5 70 75.7
Lalb_Chr09g0332191 Lupinus albus HOM05D005946 ORTHO05D007340 2.8e-24 114.8 70 75.7
RcHm_v2.0_Chr4g0430651 Rosa chinensis HOM05D005946 ORTHO05D007340 4.9e-24 114.0 68 73.5
SalBow5G0243 Salvia bowleyana HOM05D005946 ORTHO05D007340 4.9e-24 114.0 70 77.1
SalBow5G1014 Salvia bowleyana HOM05D005946 ORTHO05D007340 4.9e-24 114.0 70 77.1
MD06G1111800 Malus domestica HOM05D005946 ORTHO05D007340 8.3e-24 113.2 70 75.7
SalBow3G2240 Salvia bowleyana HOM05D005946 ORTHO05D007340 8.3e-24 113.2 70 77.1
CDE10G0420 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 1.1e-23 112.8 62 82.3
Psat7g023880 Pisum sativum HOM05D005946 ORTHO05D007340 1.1e-23 112.8 70 78.6
vmacro14062 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 2.4e-23 111.7 63 81.0
THA.LOC104799646 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 5.4e-23 110.5 89 61.8
AagrBONN_evm.TU.Sc2ySwM_228.3656 Anthoceros agrestis HOM05D005946 ORTHO05D007340 9.1e-23 109.8 70 72.9
FvH4_4g23990 Fragaria vesca HOM05D005946 ORTHO05D007340 1.6e-22 109.0 68 70.6
unitig_747.g21988 Utricularia gibba HOM05D005946 ORTHO05D007340 2.0e-22 108.6 70 74.3
arahy.Tifrunner.gnm1.ann1.XCNA8V Arachis hypogaea HOM05D005946 ORTHO05D007340 3.8e-21 104.4 100 54.0
Pp3s128_20 Physcomitrium patens HOM05D005946 ORTHO05D007340 6.6e-21 103.6 70 68.6
Cre07.g325735 Chlamydomonas reinhardtii HOM05D005946 ORTHO05D007340 1.4e-18 95.9 70 64.3
unitig_0.g1509 Utricularia gibba HOM05D005946 ORTHO05D007340 1.4e-18 95.9 69 68.1
Peaxi162Scf00314g00635 Petunia axillaris HOM05D005946 ORTHO05D007340 7.5e-17 90.1 49 85.7
C03p11470 Brassica napus HOM05D005946 ORTHO05D007340 2.2e-16 88.6 55 74.5
Actinidia22739 Actinidia chinensis HOM05D005946 ORTHO05D007340 3.7e-16 87.8 57 73.7
Sabra08G0134600 Salix brachista HOM05D005946 ORTHO05D007340 1.8e-15 85.5 144 38.9
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 2.4e-15 85.1 52 75.0
MELO3C030289.2 Cucumis melo HOM05D005946 ORTHO05D007340 9.2e-15 83.2 47 80.9
Glyma.18G008200 Glycine max HOM05D005946 ORTHO05D007340 4.6e-14 80.9 48 77.1
Nn1g00299 Nelumbo nucifera HOM05D005946 ORTHO05D007340 7.8e-14 80.1 44 77.3
SGA_v2.0_scaffold11G05656 Striga asiatica HOM05D000612 ORTHO05D000461 1.3e-13 79.3 48 79.2
MCO08G327 Micromonas commoda HOM05D005946 ORTHO05D007340 2.3e-13 78.6 62 62.9
RcHm_v2.0_Chr5g0020411 Rosa chinensis HOM05D005946 ORTHO05D007340 2.9e-13 78.2 72 52.8
ATR0955G005 Amborella trichopoda HOM05D005946 ORTHO05D007340 8.6e-13 76.6 49 71.4
FAN07G2898 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.1e-12 76.3 61 59.0
TPR.G37229 Trifolium pratense HOM05D005946 ORTHO05D007340 1.5e-12 75.9 52 67.3
Dinv16088 Davidia involucrata HOM05D005946 ORTHO05D007340 7.3e-12 73.6 48 68.8
FvH4_3g12470 Fragaria vesca HOM05D005946 ORTHO05D045642 9.5e-12 73.2 67 49.3
FAN17G0158 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.2e-11 72.8 52 63.5
PRCOL_00003875 Prasinoderma coloniale HOM05D005946 ORTHO05D007340 1.6e-11 72.4 70 51.4
FAN12G4044 Fragaria x ananassa HOM05D005946 ORTHO05D007340 3.6e-11 71.2 47 68.1
HPP92_000512 Vanilla planifolia HOM05D005946 ORTHO05D007340 3.6e-11 71.2 38 78.9
Nitab4.5_0005774g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 8.9e-10 66.6 34 82.4
Sed0005468 Sechium edule HOM05D005946 ORTHO05D007340 1.5e-09 65.9 34 82.4
SHI17703 Sapria himalayana HOM05D005946 ORTHO05D007340 1.3e-08 62.8 37 78.4
Peaxi162Scf00207g00238 Petunia axillaris HOM05D005946 ORTHO05D007340 4.9e-08 60.8 36 80.6
ClCG08G010140 Citrullus lanatus HOM05D005946 ORTHO05D007340 6.4e-08 60.5 37 73.0
FAN04G2943 Fragaria x ananassa HOM05D005946 ORTHO05D007340 6.4e-08 60.5 39 71.8
FAN08G3074 Fragaria x ananassa HOM05D005946 ORTHO05D007340 6.4e-08 60.5 39 71.8
FAN18G3129 Fragaria x ananassa HOM05D005946 ORTHO05D007340 6.4e-08 60.5 39 71.8
Sabra10G0047000 Salix brachista HOM05D005946 ORTHO05D007340 2.4e-07 58.5 42 66.7
Psat5g094720 Pisum sativum HOM05D005946 ORTHO05D007340 3.2e-07 58.2 46 60.9
RcHm_v2.0_Chr7g0186171 Rosa chinensis HOM05D005946 ORTHO05D007340 5.4e-07 57.4 36 75.0
arahy.Tifrunner.gnm1.ann1.K0QS2G Arachis hypogaea HOM05D005946 ORTHO05D007340 1.6e-06 55.8 42 64.3


User provided reference genes

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