Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb236520 Zea mays HOM05D006398 ORTHO05D007983 1.3e-71 273.1 156 100.0
Os02g0193500 Oryza sativa ssp. japonica HOM05D006398 ORTHO05D007983 6.5e-34 147.9 145 57.2
Thecc.04G122700 Theobroma cacao HOM05D006398 ORTHO05D007983 6.1e-16 88.2 149 45.0
QL06p053503 Quercus lobata HOM05D006398 ORTHO05D007983 1.8e-15 86.7 146 51.4
COL.COLO4_15698 Corchorus olitorius HOM05D006398 ORTHO05D007983 3.0e-15 85.9 143 49.7
MBI04_g11522_MAGBIO Magnolia biondii HOM05D006398 ORTHO05D007983 1.1e-14 84.0 144 43.8
Duzib133G0235 Durio zibethinus HOM05D006398 ORTHO05D007983 1.5e-14 83.6 147 51.7
Nitab4.5_0012518g0010 Nicotiana tabacum HOM05D006398 ORTHO05D007983 1.5e-14 83.6 145 42.8
FvH4_1g09810 Fragaria vesca HOM05D006398 ORTHO05D007983 3.3e-14 82.4 144 41.7
FAN19G1193 Fragaria x ananassa HOM05D006398 ORTHO05D007983 3.3e-14 82.4 144 41.7
Aqoxy5G00947 Aquilegia oxysepala HOM05D006398 ORTHO05D007983 5.7e-14 81.6 150 48.7
Dinv24399 Davidia involucrata HOM05D006398 ORTHO05D007983 5.7e-14 81.6 148 38.5
Dinv28289 Davidia involucrata HOM05D006398 ORTHO05D007983 5.7e-14 81.6 148 38.5
Peaxi162Scf00981g00021 Petunia axillaris HOM05D006398 ORTHO05D007983 5.7e-14 81.6 146 48.6
CiPaw.03G212200 Carya illinoinensis HOM05D006398 ORTHO05D007983 1.7e-13 80.1 145 51.0
Nn6g31587 Nelumbo nucifera HOM05D006398 ORTHO05D007983 2.2e-13 79.7 155 41.9
RcHm_v2.0_Chr2g0096641 Rosa chinensis HOM05D006398 ORTHO05D007983 2.2e-13 79.7 144 51.4
CSS0002146 Camellia sinensis var. sinensis HOM05D006398 ORTHO05D007983 2.8e-13 79.3 148 40.5
Sed0010545 Sechium edule HOM05D006398 ORTHO05D007983 2.8e-13 79.3 139 40.3
Ciclev10026700m.g Citrus clementina HOM05D006398 ORTHO05D007983 3.7e-13 79.0 147 51.0
FAN23G0152 Fragaria x ananassa HOM05D006398 ORTHO05D007983 3.7e-13 79.0 144 41.0
FAN26G0304 Fragaria x ananassa HOM05D006398 ORTHO05D007983 3.7e-13 79.0 144 41.0
TAR381G1497 Trochodendron aralioides HOM05D006398 ORTHO05D007983 3.7e-13 79.0 145 42.1
CSS0046434 Camellia sinensis var. sinensis HOM05D006398 ORTHO05D007983 4.8e-13 78.6 148 40.5
Cfa007121 Carpinus fangiana HOM05D006398 ORTHO05D007983 4.8e-13 78.6 145 53.1
Dinv19113 Davidia involucrata HOM05D006398 ORTHO05D007983 4.8e-13 78.6 149 40.9
Nitab4.5_0011544g0020 Nicotiana tabacum HOM05D006398 ORTHO05D007983 1.1e-12 77.4 134 41.8
TAR376G1029 Trochodendron aralioides HOM05D006398 ORTHO05D007983 1.1e-12 77.4 137 45.3
PSO017G0885 Papaver somniferum HOM05D006398 ORTHO05D007983 2.4e-12 76.3 117 43.6
Prupe.7G188600 Prunus persica HOM05D006398 ORTHO05D007983 2.4e-12 76.3 144 41.0
Cfa011161 Carpinus fangiana HOM05D006398 ORTHO05D007983 3.1e-12 75.9 143 49.0
Lj2g0016631 Lotus japonicus HOM05D006398 ORTHO05D007983 4.1e-12 75.5 143 46.2
PSO017G7180 Papaver somniferum HOM05D006398 ORTHO05D007983 5.3e-12 75.1 117 43.6
Hma1.2p1_0085F.1_g044270 Hydrangea macrophylla HOM05D006398 ORTHO05D007983 7.0e-12 74.7 151 41.7
Gohir.A07G076575 Gossypium hirsutum HOM05D006398 ORTHO05D007983 9.1e-12 74.3 148 49.3
Manes.02G117704 Manihot esculenta HOM05D006398 ORTHO05D007983 9.1e-12 74.3 149 39.6
CDE06G2001 Ceratophyllum demersum HOM05D006398 ORTHO05D007983 1.6e-11 73.6 142 40.1
FAN28G0584 Fragaria x ananassa HOM05D006398 ORTHO05D007983 1.6e-11 73.6 144 41.7
Lj4P245T44 Lonicera japonica HOM05D006398 ORTHO05D007983 1.6e-11 73.6 146 41.8
PGR119G1180 Punica granatum HOM05D006398 ORTHO05D007983 2.6e-11 72.8 92 64.1
Atru.chr3.7 Acer truncatum HOM05D006398 ORTHO05D007983 3.5e-11 72.4 147 39.5
Actinidia28761 Actinidia chinensis HOM05D006398 ORTHO05D007983 3.5e-11 72.4 153 49.0
Gohir.D11G173600 Gossypium hirsutum HOM05D006398 ORTHO05D007983 3.5e-11 72.4 138 50.0
Gorai.007G185900 Gossypium raimondii HOM05D006398 ORTHO05D007983 3.5e-11 72.4 145 49.7
Gohir.A11G167300 Gossypium hirsutum HOM05D006398 ORTHO05D007983 4.5e-11 72.0 145 49.7
Haze_03650 Corylus avellana HOM05D000071 ORTHO05D007983 5.9e-11 71.6 94 66.0
CsaV3_6G047960 Cucumis sativus L. HOM05D006398 ORTHO05D007983 5.9e-11 71.6 138 37.7
Manes.01G158600 Manihot esculenta HOM05D006398 ORTHO05D007983 5.9e-11 71.6 91 49.5
ECA238G1438 Erigeron canadensis HOM05D006398 ORTHO05D007983 7.7e-11 71.2 119 39.5
Solyc02g068290.2 Solanum lycopersicum HOM05D006398 ORTHO05D007983 7.7e-11 71.2 149 37.6
Sopen02g017390 Solanum pennellii HOM05D006398 ORTHO05D007983 7.7e-11 71.2 149 37.6
PGSC0003DMG400009426 Solanum tuberosum HOM05D006398 ORTHO05D007983 7.7e-11 71.2 145 39.3
Gorai.001G086400 Gossypium raimondii HOM05D006398 ORTHO05D007983 1.0e-10 70.9 148 48.0
HanXRQChr10g0316121 Helianthus annuus HOM05D006398 ORTHO05D007983 1.0e-10 70.9 141 36.9
SalBow3G3387 Salvia bowleyana HOM05D006398 ORTHO05D007983 1.0e-10 70.9 137 39.4
MELO3C007985.2 Cucumis melo HOM05D006398 ORTHO05D007983 1.3e-10 70.5 139 38.1
SEGI_02084 Sequoiadendron giganteum HOM05D006398 ORTHO05D007983 1.3e-10 70.5 142 40.8
CANSAT56G1034 Cannabis sativa HOM05D006398 ORTHO05D007983 2.2e-10 69.7 135 49.6
Gohir.D07G081300 Gossypium hirsutum HOM05D006398 ORTHO05D007983 2.2e-10 69.7 148 48.0
Oeu000786.1 Olea europaea HOM05D006398 ORTHO05D007983 2.2e-10 69.7 136 48.5
ATR0605G223 Amborella trichopoda HOM05D006398 ORTHO05D007983 2.9e-10 69.3 149 44.3
MSTRG.19082 Avicennia marina HOM05D006398 ORTHO05D007983 5.0e-10 68.6 95 50.5
Ca_25041_v3 Cicer arietinum L. HOM05D006398 ORTHO05D007983 6.5e-10 68.2 143 39.2
Lalb_Chr16g0380261 Lupinus albus HOM05D006398 ORTHO05D007983 6.5e-10 68.2 143 46.9
CAN.G883.23 Capsicum annuum HOM05D006398 ORTHO05D007983 8.5e-10 67.8 145 48.3
MD02G1107400 Malus domestica HOM05D006398 ORTHO05D007983 8.5e-10 67.8 75 52.0
MD15G1226600 Malus domestica HOM05D006398 ORTHO05D007983 1.9e-09 66.6 139 38.8
Eucgr.J02575 Eucalyptus grandis HOM05D006398 ORTHO05D007983 3.2e-09 65.9 91 62.6
Sed0016714 Sechium edule HOM05D006398 ORTHO05D007983 3.2e-09 65.9 123 48.8
Cfa000559 Carpinus fangiana HOM05D006398 ORTHO05D007983 4.2e-09 65.5 91 47.3
DCAR_014127 Daucus carota HOM05D006398 ORTHO05D007983 4.2e-09 65.5 91 46.2
Potri.011G146400 Populus trichocarpa HOM05D006398 ORTHO05D007983 4.2e-09 65.5 144 37.5
Hma1.2p1_0353F.1_g133130 Hydrangea macrophylla HOM05D006398 ORTHO05D007983 5.5e-09 65.1 94 43.6
PGR042G1229 Punica granatum HOM05D006398 ORTHO05D007983 5.5e-09 65.1 92 58.7
Sabra16G0308300 Salix brachista HOM05D006398 ORTHO05D007983 5.5e-09 65.1 100 45.0
Sabra11G0131300 Salix brachista HOM05D006398 ORTHO05D007983 7.2e-09 64.7 143 36.4
Oeu024785.2 Olea europaea HOM05D006398 ORTHO05D007983 9.4e-09 64.3 138 37.7
Rhsim10G0190200 Rhododendron simsii HOM05D006398 ORTHO05D007983 1.6e-08 63.5 94 43.6
CDE04G3216 Ceratophyllum demersum HOM05D006398 ORTHO05D007983 2.1e-08 63.2 134 40.3
TWI53G1768 Tripterygium wilfordii HOM05D006398 ORTHO05D007983 2.1e-08 63.2 103 55.3
HPP92_018898 Vanilla planifolia HOM05D006398 ORTHO05D007983 4.7e-08 62.0 98 38.8
Phvul.002G119800 Phaseolus vulgaris HOM05D006398 ORTHO05D007983 6.1e-08 61.6 139 49.6
TPR.G33762 Trifolium pratense HOM05D006398 ORTHO05D007983 1.0e-07 60.8 148 39.9
Medtr5g025015 Medicago truncatula HOM05D006398 ORTHO05D007983 1.4e-07 60.5 144 37.5
vmacro20410 Vaccinium macrocarpon HOM05D006398 ORTHO05D007983 1.8e-07 60.1 149 36.9
HPP92_018846 Vanilla planifolia HOM05D006398 ORTHO05D007983 2.3e-07 59.7 96 38.5
Cfa012756 Carpinus fangiana HOM05D006398 ORTHO05D007983 3.0e-07 59.3 90 61.1
Lsat_1_v5_gn_2_72860 Lactuca sativa HOM05D006398 ORTHO05D007983 6.7e-07 58.2 68 47.1
Psat2g147080 Pisum sativum HOM05D006398 ORTHO05D007983 6.7e-07 58.2 141 35.5
VMungo1215G0575 Vigna mungo HOM05D006398 ORTHO05D007983 8.8e-07 57.8 139 48.9
Glyma.11G089000 Glycine max HOM05D006398 ORTHO05D007983 1.2e-06 57.4 150 45.3
Sc03g0004180 Simmondsia chinensis HOM05D006398 ORTHO05D007983 1.5e-06 57.0 146 45.2
Migut.J00328 Erythranthe guttata HOM05D006398 ORTHO05D007983 2.0e-06 56.6 116 35.3
SGA_v2.0_scaffold126G33784 Striga asiatica HOM05D006398 ORTHO05D007983 3.3e-06 55.8 134 36.6


User provided reference genes

Program Settings