Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb236230 Zea mays HOM05D002626 ORTHO05D002749 5.6e-57 224.2 123 100.0
Zm00001eb236190 Zea mays HOM05D002626 ORTHO05D002749 2.4e-52 208.8 123 95.1
Zm00001eb237320 Zea mays HOM05D002626 ORTHO05D002749 9.3e-44 180.3 115 90.4
Zm00001eb128590 Zea mays HOM05D002626 ORTHO05D002749 9.6e-33 143.7 75 96.0
Os01g0273300 Oryza sativa ssp. japonica HOM05D002626 ORTHO05D002749 1.1e-25 120.2 77 77.9
Zm00001eb329400 Zea mays HOM05D002626 ORTHO05D002749 2.2e-13 79.3 74 52.7
Os07g0647400 Oryza sativa ssp. japonica HOM05D002626 ORTHO05D002749 3.8e-13 78.6 68 52.9
HPP92_025236 Vanilla planifolia HOM05D002626 ORTHO05D002749 6.5e-13 77.8 71 47.9
FvH4_2g24111 Fragaria vesca HOM05D002626 ORTHO05D002749 5.5e-12 74.7 73 45.2
FAN24G2768 Fragaria x ananassa HOM05D002626 ORTHO05D002749 5.5e-12 74.7 73 45.2
Lalb_Chr06g0163161 Lupinus albus HOM05D002626 ORTHO05D002749 1.2e-11 73.6 73 45.2
Migut.N02142 Erythranthe guttata HOM05D002626 ORTHO05D002749 2.7e-11 72.4 72 48.6
Medtr7g094240 Medicago truncatula HOM05D002626 ORTHO05D002749 4.7e-11 71.6 74 45.9
Migut.N02171 Erythranthe guttata HOM05D002626 ORTHO05D002749 7.9e-11 70.9 72 48.6
Glyma.19G152800 Glycine max HOM05D002626 ORTHO05D002749 7.9e-11 70.9 73 41.1
MBI17_g26039_MAGBIO Magnolia biondii HOM05D002626 ORTHO05D002749 1.4e-10 70.1 73 38.4
MBI17_g29026_MAGBIO Magnolia biondii HOM05D002626 ORTHO05D002749 1.4e-10 70.1 73 38.4
arahy.Tifrunner.gnm1.ann1.51INSQ Arachis hypogaea HOM05D002626 ORTHO05D002749 1.8e-10 69.7 69 46.4
FAN15G1209 Fragaria x ananassa HOM05D002626 ORTHO05D002749 1.8e-10 69.7 73 42.5
Manes.05G072200 Manihot esculenta HOM05D002626 ORTHO05D002749 1.8e-10 69.7 73 43.8
vmacro02541 Vaccinium macrocarpon HOM05D000488 ORTHO05D002749 1.8e-10 69.7 73 41.1
FAN20G1963 Fragaria x ananassa HOM05D002626 ORTHO05D002749 2.3e-10 69.3 73 42.5
TAR362G1114 Trochodendron aralioides HOM05D002626 ORTHO05D002749 2.3e-10 69.3 72 43.1
VMungo1383G0111 Vigna mungo HOM05D002626 ORTHO05D002749 2.3e-10 69.3 73 42.5
Manes.01G211100 Manihot esculenta HOM05D002626 ORTHO05D002749 3.0e-10 68.9 73 42.5
Phvul.001G147700 Phaseolus vulgaris HOM05D002626 ORTHO05D002749 3.9e-10 68.6 73 42.5
AT1G03350 Arabidopsis thaliana HOM05D002626 ORTHO05D002749 5.1e-10 68.2 73 41.1
A08p37380 Brassica napus HOM05D002626 ORTHO05D002749 6.7e-10 67.8 73 42.5
BraA08t35635Z Brassica rapa HOM05D002626 ORTHO05D002749 6.7e-10 67.8 73 42.5
Cpa.g.sc1652.1 Carica papaya HOM05D002626 ORTHO05D002749 6.7e-10 67.8 73 41.1
Pp3c2_17090 Physcomitrium patens HOM05D002626 ORTHO05D002749 8.8e-10 67.4 76 40.8
Sopen09g028880 Solanum pennellii HOM05D002626 ORTHO05D002749 1.1e-09 67.0 73 38.4
Zm00001eb305040 Zea mays HOM05D001112 ORTHO05D023346 1.1e-09 67.0 33 100.0
CiPaw.08G102400 Carya illinoinensis HOM05D002626 ORTHO05D002749 1.5e-09 66.6 73 42.5
Oeu047888.1 Olea europaea HOM05D002626 ORTHO05D002749 1.5e-09 66.6 75 42.7
Psat3g066280 Pisum sativum HOM05D002626 ORTHO05D002749 2.0e-09 66.2 74 41.9
Prupe.8G247300 Prunus persica HOM05D002626 ORTHO05D002749 2.0e-09 66.2 72 41.7
PGR004G1768 Punica granatum HOM05D002626 ORTHO05D002749 2.0e-09 66.2 75 38.7
PGR065G0005 Punica granatum HOM05D002626 ORTHO05D002749 2.0e-09 66.2 75 38.7
Solyc09g074060.3 Solanum lycopersicum HOM05D002626 ORTHO05D002749 2.0e-09 66.2 73 38.4
TPR.G32843 Trifolium pratense HOM05D002626 ORTHO05D002749 2.0e-09 66.2 74 41.9
Actinidia24313 Actinidia chinensis HOM05D002626 ORTHO05D002749 2.6e-09 65.9 73 39.7
CARHR002720 Cardamine hirsuta HOM05D002626 ORTHO05D002749 2.6e-09 65.9 73 39.7
Dinv11263 Davidia involucrata HOM05D002626 ORTHO05D002749 2.6e-09 65.9 73 37.0
Thhalv10009692m.g Eutrema salsugineum HOM05D002626 ORTHO05D002749 2.6e-09 65.9 73 41.1
PGSC0003DMG400003842 Solanum tuberosum HOM05D002626 ORTHO05D002749 2.6e-09 65.9 73 37.0
TWI59G0111 Tripterygium wilfordii HOM05D002626 ORTHO05D002749 2.6e-09 65.9 69 43.5
CANSAT25G0374 Cannabis sativa HOM05D002626 ORTHO05D002749 3.3e-09 65.5 74 39.2
Glyma.03G149800 Glycine max HOM05D002626 ORTHO05D002749 3.3e-09 65.5 67 46.3
Medtr1g089850 Medicago truncatula HOM05D002626 ORTHO05D002749 3.3e-09 65.5 75 41.3
Gohir.D12G006000 Gossypium hirsutum HOM05D002626 ORTHO05D002749 4.4e-09 65.1 68 44.1
Ca_08557_v3 Cicer arietinum L. HOM05D002626 ORTHO05D002749 5.7e-09 64.7 74 40.5
Ca_08591_v3 Cicer arietinum L. HOM05D002626 ORTHO05D002749 5.7e-09 64.7 74 40.5
Eucgr.H01532 Eucalyptus grandis HOM05D002626 ORTHO05D002749 5.7e-09 64.7 68 42.6
Gohir.A12G006600 Gossypium hirsutum HOM05D002626 ORTHO05D002749 5.7e-09 64.7 68 44.1
AL1G12870 Arabidopsis lyrata HOM05D002626 ORTHO05D002749 7.4e-09 64.3 73 39.7
Gorai.008G006000 Gossypium raimondii HOM05D002626 ORTHO05D002749 7.4e-09 64.3 68 44.1
MD03G1271200 Malus domestica HOM05D002626 ORTHO05D002749 7.4e-09 64.3 72 40.3
Nn1g02101 Nelumbo nucifera HOM05D002626 ORTHO05D002749 7.4e-09 64.3 73 41.1
Oeu006225.1 Olea europaea HOM05D002626 ORTHO05D002749 7.4e-09 64.3 73 39.7
PSO170G6443 Papaver somniferum HOM05D002626 ORTHO05D002749 7.4e-09 64.3 75 41.3
PSO407G0431 Papaver somniferum HOM05D002626 ORTHO05D002749 7.4e-09 64.3 75 41.3
TWI14G0270 Tripterygium wilfordii HOM05D002626 ORTHO05D002749 7.4e-09 64.3 69 42.0
Carub.0001s0247 Capsella rubella HOM05D002626 ORTHO05D002749 9.7e-09 63.9 73 38.4
Haze_04764 Corylus avellana HOM05D002626 ORTHO05D002749 9.7e-09 63.9 73 41.1
Eucgr.H03637 Eucalyptus grandis HOM05D002626 ORTHO05D002749 9.7e-09 63.9 69 40.6
Psat6g170040 Pisum sativum HOM05D002626 ORTHO05D002749 9.7e-09 63.9 75 37.3
RcHm_v2.0_Chr6g0291911 Rosa chinensis HOM05D002626 ORTHO05D002749 9.7e-09 63.9 73 39.7
BcaC05g24541 Brassica carinata HOM05D002626 ORTHO05D002749 1.3e-08 63.5 74 41.9
Nitab4.5_0001323g0090 Nicotiana tabacum HOM05D002626 ORTHO05D002749 1.3e-08 63.5 72 38.9
Sp1g02350 Schrenkiella parvula HOM05D002626 ORTHO05D002749 1.3e-08 63.5 73 38.4
Thecc.01G285200 Theobroma cacao HOM05D002626 ORTHO05D002749 1.3e-08 63.5 67 43.3
CSS0042341 Camellia sinensis var. sinensis HOM05D002626 ORTHO05D002749 1.7e-08 63.2 73 34.2
Pp3c1_21290 Physcomitrium patens HOM05D002626 ORTHO05D002749 1.7e-08 63.2 76 36.8
SEGI_28940 Sequoiadendron giganteum HOM05D002626 ORTHO05D002749 1.7e-08 63.2 75 36.0
Cfa006085 Carpinus fangiana HOM05D002626 ORTHO05D002749 2.2e-08 62.8 73 39.7
Cfa015547 Carpinus fangiana HOM05D002626 ORTHO05D002749 2.2e-08 62.8 72 40.3
Duzib211G0157 Durio zibethinus HOM05D002626 ORTHO05D002749 2.2e-08 62.8 68 42.6
THA.LOC104801214 Tarenaya hassleriana HOM05D002626 ORTHO05D002749 2.2e-08 62.8 73 37.0
TPR.G13314 Trifolium pratense HOM05D002626 ORTHO05D002749 2.2e-08 62.8 75 37.3
BcaC05g24534 Brassica carinata HOM05D002626 ORTHO05D002749 2.8e-08 62.4 74 40.5
BcaC05g24538 Brassica carinata HOM05D002626 ORTHO05D002749 2.8e-08 62.4 74 40.5
BcaC07g36970 Brassica carinata HOM05D002626 ORTHO05D002749 2.8e-08 62.4 73 41.1
C08p00540 Brassica napus HOM05D002626 ORTHO05D002749 2.8e-08 62.4 73 41.1
BolC8t46854H Brassica oleracea HOM05D002626 ORTHO05D002749 2.8e-08 62.4 73 41.1
CsaV3_7G028520 Cucumis sativus L. HOM05D002626 ORTHO05D002749 2.8e-08 62.4 70 38.6
Lj5g0004574 Lotus japonicus HOM05D002626 ORTHO05D002749 2.8e-08 62.4 70 42.9
Nitab4.5_0005725g0010 Nicotiana tabacum HOM05D002626 ORTHO05D002749 2.8e-08 62.4 72 38.9
VMungo0720G1093 Vigna mungo HOM05D002626 ORTHO05D002749 2.8e-08 62.4 73 38.4
A10p01900 Brassica napus HOM05D002626 ORTHO05D002749 3.7e-08 62.0 74 41.9
BraA10t42463Z Brassica rapa HOM05D002626 ORTHO05D002749 3.7e-08 62.0 74 41.9
Duzib138G0100 Durio zibethinus HOM05D002626 ORTHO05D002749 3.7e-08 62.0 68 41.2
SalBow6G5527 Salvia bowleyana HOM05D002626 ORTHO05D002749 3.7e-08 62.0 73 39.7
ClCG09G006790 Citrullus lanatus HOM05D002626 ORTHO05D002749 4.8e-08 61.6 70 37.1
Duzib133G0595 Durio zibethinus HOM05D002626 ORTHO05D002749 4.8e-08 61.6 68 41.2
Sed0020564 Sechium edule HOM05D002626 ORTHO05D002749 4.8e-08 61.6 70 37.1
Glyma.02G150000 Glycine max HOM05D002626 ORTHO05D002749 6.3e-08 61.2 73 38.4
Phvul.007G168800 Phaseolus vulgaris HOM05D002626 ORTHO05D002749 6.3e-08 61.2 73 38.4
QL12p022920 Quercus lobata HOM05D002626 ORTHO05D002749 6.3e-08 61.2 72 37.5
SGA_v2.0_scaffold1G00439 Striga asiatica HOM05D002626 ORTHO05D002749 6.3e-08 61.2 112 33.9
Aa31LG1G9240 Aethionema arabicum HOM05D002626 ORTHO05D002749 8.2e-08 60.8 73 38.4
Cc01_g19870 Coffea canephora HOM05D002626 ORTHO05D002749 8.2e-08 60.8 68 41.2
Nn4g26139 Nelumbo nucifera HOM05D002626 ORTHO05D002749 8.2e-08 60.8 72 40.3
Haze_01001 Corylus avellana HOM05D002626 ORTHO05D002749 1.1e-07 60.5 75 38.7
Dinv38357 Davidia involucrata HOM05D002626 ORTHO05D002749 1.1e-07 60.5 73 35.6
MBI19_g39901_MAGBIO Magnolia biondii HOM05D002626 ORTHO05D002749 1.1e-07 60.5 74 37.8
GSVIVG01011067001 Vitis vinifera HOM05D002626 ORTHO05D002749 1.1e-07 60.5 70 38.6
BolC5t28965H Brassica oleracea HOM05D002626 ORTHO05D002749 1.4e-07 60.1 74 40.5
Duzib212G0333 Durio zibethinus HOM05D002626 ORTHO05D002749 1.4e-07 60.1 75 34.7
Gohir.D08G078700 Gossypium hirsutum HOM05D002626 ORTHO05D002749 1.4e-07 60.1 67 40.3
Gorai.004G083900 Gossypium raimondii HOM05D002626 ORTHO05D002749 1.4e-07 60.1 67 40.3
Sed0018079 Sechium edule HOM05D002626 ORTHO05D002749 1.4e-07 60.1 70 37.1
TPR.G18027 Trifolium pratense HOM05D002626 ORTHO05D002749 1.4e-07 60.1 72 37.5
Ah.06g192170 Amaranthus hybridus HOM05D002626 ORTHO05D002749 1.8e-07 59.7 71 36.6
MELO3C015869.2 Cucumis melo HOM05D002626 ORTHO05D002749 1.8e-07 59.7 73 37.0
Glyma.10G023800 Glycine max HOM05D002626 ORTHO05D002749 1.8e-07 59.7 73 37.0
HanXRQChr01g0003231 Helianthus annuus HOM05D002626 ORTHO05D002749 1.8e-07 59.7 68 39.7
Gohir.A08G070350 Gossypium hirsutum HOM05D002626 ORTHO05D002749 2.4e-07 59.3 66 37.9
Potri.015G050700 Populus trichocarpa HOM05D002626 ORTHO05D002749 2.4e-07 59.3 70 45.7
Rhsim13G0021700 Rhododendron simsii HOM05D002626 ORTHO05D002749 2.4e-07 59.3 72 36.1
TAR365G0050 Trochodendron aralioides HOM05D002626 ORTHO05D002749 2.4e-07 59.3 73 38.4
FAN27G1288 Fragaria x ananassa HOM05D002626 ORTHO05D002749 3.1e-07 58.9 73 39.7
Psat1g185240 Pisum sativum HOM05D002626 ORTHO05D002749 3.1e-07 58.9 68 36.8
Potri.008G199100 Populus trichocarpa HOM05D002626 ORTHO05D002749 3.1e-07 58.9 70 45.7
Prupe.1G148100 Prunus persica HOM05D002626 ORTHO05D002749 3.1e-07 58.9 75 37.3
Sabra08G0161500 Salix brachista HOM05D002626 ORTHO05D002749 3.1e-07 58.9 70 45.7
THA.LOC104802739 Tarenaya hassleriana HOM05D002626 ORTHO05D002749 3.1e-07 58.9 75 34.7
unitig_744.g24486 Utricularia gibba HOM05D002626 ORTHO05D002749 3.1e-07 58.9 68 39.7
CDE09G1249 Ceratophyllum demersum HOM05D002626 ORTHO05D002749 4.1e-07 58.5 69 37.7
RcHm_v2.0_Chr4g0419271 Rosa chinensis HOM05D002626 ORTHO05D002749 4.1e-07 58.5 75 36.0
GSVIVG01017862001 Vitis vinifera HOM05D002626 ORTHO05D002749 4.1e-07 58.5 75 34.7
Ca_10399_v3 Cicer arietinum L. HOM05D002626 ORTHO05D002749 5.3e-07 58.2 75 36.0
Sc05g0005160 Simmondsia chinensis HOM05D002626 ORTHO05D002749 5.3e-07 58.2 68 38.2
Aqoxy2G03206 Aquilegia oxysepala HOM05D002626 ORTHO05D002749 7.0e-07 57.8 75 33.3
Dinv44463 Davidia involucrata HOM05D002626 ORTHO05D002749 7.0e-07 57.8 73 35.6
MSTRG.18208 Avicennia marina HOM05D002626 ORTHO05D002749 9.1e-07 57.4 73 37.0
PGR119G0265 Punica granatum HOM05D002626 ORTHO05D002749 1.2e-06 57.0 69 36.2
CiPaw.01G157700 Carya illinoinensis HOM05D002626 ORTHO05D002749 1.5e-06 56.6 68 38.2
Duzib151G1123 Durio zibethinus HOM05D002626 ORTHO05D002749 1.5e-06 56.6 74 33.8
Migut.D00253 Erythranthe guttata HOM05D002626 ORTHO05D002749 1.5e-06 56.6 73 37.0
FvH4_4g14080 Fragaria vesca HOM05D002626 ORTHO05D002749 1.5e-06 56.6 69 37.7
FAN12G3398 Fragaria x ananassa HOM05D002626 ORTHO05D002749 1.5e-06 56.6 69 37.7
FAN17G1882 Fragaria x ananassa HOM05D002626 ORTHO05D002749 1.5e-06 56.6 69 37.7
Gohir.D09G232600 Gossypium hirsutum HOM05D002626 ORTHO05D002749 1.5e-06 56.6 73 37.0
Gorai.006G255500 Gossypium raimondii HOM05D002626 ORTHO05D002749 1.5e-06 56.6 73 37.0
PSO832G2564 Papaver somniferum HOM05D002626 ORTHO05D002749 1.5e-06 56.6 66 42.4
Hma1.2p1_0643F.1_g194410 Hydrangea macrophylla HOM05D002626 ORTHO05D002749 2.0e-06 56.2 73 35.6
Manes.03G187300 Manihot esculenta HOM05D002626 ORTHO05D002749 2.0e-06 56.2 74 39.2
Aa31LG9G4790 Aethionema arabicum HOM05D002626 ORTHO05D002749 2.6e-06 55.8 73 35.6
CANSAT78G2302 Cannabis sativa HOM05D002626 ORTHO05D002749 2.6e-06 55.8 73 31.5
ECA248G1841 Erigeron canadensis HOM05D002626 ORTHO05D002749 2.6e-06 55.8 68 36.8
FAN07G1094 Fragaria x ananassa HOM05D002626 ORTHO05D002749 2.6e-06 55.8 69 37.7
Lalb_Chr18g0055961 Lupinus albus HOM05D002626 ORTHO05D002749 2.6e-06 55.8 71 33.8
PSO210G5367 Papaver somniferum HOM05D002626 ORTHO05D002749 2.6e-06 55.8 66 42.4
AUR62004919 Chenopodium quinoa HOM05D002626 ORTHO05D002749 3.4e-06 55.5 72 34.7
Thecc.04G271100 Theobroma cacao HOM05D002626 ORTHO05D002749 3.4e-06 55.5 69 34.8
BcaC02g09444 Brassica carinata HOM05D002626 ORTHO05D002749 4.5e-06 55.1 72 37.5
C04p42810 Brassica napus HOM05D002626 ORTHO05D002749 4.5e-06 55.1 73 37.0
Gohir.A09G231500 Gossypium hirsutum HOM05D002626 ORTHO05D002749 4.5e-06 55.1 56 44.6
Lsat_1_v5_gn_5_187601 Lactuca sativa HOM05D002626 ORTHO05D002749 4.5e-06 55.1 74 32.4
BolC4t25847H Brassica oleracea HOM05D002626 ORTHO05D002749 5.9e-06 54.7 72 37.5
Medtr2g021070 Medicago truncatula HOM05D002626 ORTHO05D002749 5.9e-06 54.7 69 34.8
AUR62001037 Chenopodium quinoa HOM05D002626 ORTHO05D002749 7.7e-06 54.3 72 34.7
Cre06.g284000 Chlamydomonas reinhardtii HOM05D002626 ORTHO05D002749 7.7e-06 54.3 68 35.3
SHI15342 Sapria himalayana HOM05D002626 ORTHO05D002749 7.7e-06 54.3 68 35.3


User provided reference genes

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