Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb236210 Zea mays HOM05D002626 ORTHO05D002749 4.9e-49 197.6 108 100.0
Zm00001eb305050 Zea mays HOM05D002626 ORTHO05D002749 7.4e-45 183.7 108 93.5
Zm00001eb128590 Zea mays HOM05D002626 ORTHO05D002749 1.6e-36 156.0 106 84.9
Os01g0273300 Oryza sativa ssp. japonica HOM05D002626 ORTHO05D002749 1.2e-26 123.2 108 66.7
Eucgr.H03637 Eucalyptus grandis HOM05D002626 ORTHO05D002749 2.0e-13 79.3 106 47.2
TAR365G0050 Trochodendron aralioides HOM05D002626 ORTHO05D002749 7.4e-13 77.4 96 46.9
THA.LOC104802739 Tarenaya hassleriana HOM05D002626 ORTHO05D002749 1.7e-12 76.3 94 46.8
Cpa.g.sc16.59 Carica papaya HOM05D002626 ORTHO05D002749 2.2e-12 75.9 99 45.5
Glyma.13G211400 Glycine max HOM05D002626 ORTHO05D002749 2.2e-12 75.9 88 48.9
Nn4g26139 Nelumbo nucifera HOM05D002626 ORTHO05D002749 2.2e-12 75.9 103 47.6
Sp7g10530 Schrenkiella parvula HOM05D002626 ORTHO05D002749 2.2e-12 75.9 90 45.6
Aa31LG9G4790 Aethionema arabicum HOM05D002626 ORTHO05D002749 2.8e-12 75.5 87 47.1
Glyma.15G101300 Glycine max HOM05D002626 ORTHO05D002749 2.8e-12 75.5 88 48.9
PGR004G1768 Punica granatum HOM05D002626 ORTHO05D002749 2.8e-12 75.5 93 46.2
PGR065G0005 Punica granatum HOM05D002626 ORTHO05D002749 2.8e-12 75.5 93 46.2
Sed0019043 Sechium edule HOM05D002626 ORTHO05D002749 2.8e-12 75.5 84 47.6
arahy.Tifrunner.gnm1.ann1.YGA72Z Arachis hypogaea HOM05D002626 ORTHO05D002749 3.7e-12 75.1 95 44.2
AL9U10970 Arabidopsis lyrata HOM05D002626 ORTHO05D002749 4.8e-12 74.7 85 49.4
arahy.Tifrunner.gnm1.ann1.WS6KBW Arachis hypogaea HOM05D002626 ORTHO05D002749 6.3e-12 74.3 95 44.2
FAN07G1094 Fragaria x ananassa HOM05D002626 ORTHO05D002749 8.2e-12 73.9 85 49.4
VMungo0540G2474 Vigna mungo HOM05D002626 ORTHO05D002749 8.2e-12 73.9 93 44.1
FAN12G3398 Fragaria x ananassa HOM05D002626 ORTHO05D002749 1.1e-11 73.6 85 49.4
CsaV3_3G013870 Cucumis sativus L. HOM05D002626 ORTHO05D002749 1.4e-11 73.2 88 45.5
Thhalv10025468m.g Eutrema salsugineum HOM05D002626 ORTHO05D002749 1.4e-11 73.2 95 43.2
MD13G1179500 Malus domestica HOM05D002626 ORTHO05D002749 1.4e-11 73.2 106 44.3
Ca_00596_v3 Cicer arietinum L. HOM05D002626 ORTHO05D002749 1.8e-11 72.8 90 44.4
MELO3C006579.2 Cucumis melo HOM05D002626 ORTHO05D002749 1.8e-11 72.8 88 45.5
Dinv44463 Davidia involucrata HOM05D002626 ORTHO05D002749 1.8e-11 72.8 86 45.3
Dinv11263 Davidia involucrata HOM05D002626 ORTHO05D002749 2.4e-11 72.4 81 46.9
Medtr2g021070 Medicago truncatula HOM05D002626 ORTHO05D002749 2.4e-11 72.4 108 41.7
Haze_01001 Corylus avellana HOM05D002626 ORTHO05D002749 3.1e-11 72.0 84 48.8
ECA246G4466 Erigeron canadensis HOM05D002626 ORTHO05D002749 3.1e-11 72.0 97 40.2
Cfa015547 Carpinus fangiana HOM05D002626 ORTHO05D002749 4.1e-11 71.6 84 48.8
HPP92_025236 Vanilla planifolia HOM05D002626 ORTHO05D002749 4.1e-11 71.6 85 49.4
FAN17G1882 Fragaria x ananassa HOM05D002626 ORTHO05D002749 7.0e-11 70.9 85 48.2
TPR.G18027 Trifolium pratense HOM05D002626 ORTHO05D002749 7.0e-11 70.9 109 43.1
TAR362G1114 Trochodendron aralioides HOM05D002626 ORTHO05D002749 7.0e-11 70.9 96 43.8
FvH4_4g14080 Fragaria vesca HOM05D002626 ORTHO05D002749 9.1e-11 70.5 109 43.1
Lalb_Chr18g0055961 Lupinus albus HOM05D002626 ORTHO05D002749 9.1e-11 70.5 106 42.5
Phvul.006G157500 Phaseolus vulgaris HOM05D002626 ORTHO05D002749 9.1e-11 70.5 107 43.9
Dinv38357 Davidia involucrata HOM05D002626 ORTHO05D002749 1.2e-10 70.1 86 41.9
AT4G13110 Arabidopsis thaliana HOM05D002626 ORTHO05D002749 1.6e-10 69.7 84 48.8
Cc03_g02830 Coffea canephora HOM05D002626 ORTHO05D002749 2.0e-10 69.3 95 45.3
RcHm_v2.0_Chr4g0419271 Rosa chinensis HOM05D002626 ORTHO05D002749 2.0e-10 69.3 108 43.5
Psat1g185240 Pisum sativum HOM05D002626 ORTHO05D002749 2.6e-10 68.9 108 40.7
vmacro15291 Vaccinium macrocarpon HOM05D002626 ORTHO05D002749 2.6e-10 68.9 80 45.0
Carub.0007s2960 Capsella rubella HOM05D002626 ORTHO05D002749 3.5e-10 68.6 93 45.2
BcaC02g09444 Brassica carinata HOM05D002626 ORTHO05D002749 4.5e-10 68.2 98 40.8
C04p42810 Brassica napus HOM05D002626 ORTHO05D002749 4.5e-10 68.2 98 41.8
BolC4t25847H Brassica oleracea HOM05D002626 ORTHO05D002749 4.5e-10 68.2 98 41.8
BraA04t16588Z Brassica rapa HOM05D002626 ORTHO05D002749 5.9e-10 67.8 96 42.7
Lj6g0010477 Lotus japonicus HOM05D002626 ORTHO05D002749 5.9e-10 67.8 104 42.3
QL06p005999 Quercus lobata HOM05D002626 ORTHO05D002749 5.9e-10 67.8 91 44.0
Lsat_1_v5_gn_3_24921 Lactuca sativa HOM05D002626 ORTHO05D002749 7.7e-10 67.4 91 40.7
TWI73G0323 Tripterygium wilfordii HOM05D002626 ORTHO05D002749 7.7e-10 67.4 107 44.9
Nn1g02101 Nelumbo nucifera HOM05D002626 ORTHO05D002749 1.0e-09 67.0 96 41.7
ATR0626G216 Amborella trichopoda HOM05D002626 ORTHO05D002749 1.3e-09 66.6 67 55.2
Hma1.2p1_0643F.1_g194410 Hydrangea macrophylla HOM05D002626 ORTHO05D002749 1.3e-09 66.6 80 43.8
Solyc01g080340.3 Solanum lycopersicum HOM05D002626 ORTHO05D002749 1.3e-09 66.6 80 41.2
CANSAT78G2302 Cannabis sativa HOM05D002626 ORTHO05D002749 1.7e-09 66.2 110 40.0
MBI17_g26039_MAGBIO Magnolia biondii HOM05D002626 ORTHO05D002749 1.7e-09 66.2 106 41.5
Peaxi162Scf00095g00072 Petunia axillaris HOM05D002626 ORTHO05D002749 1.7e-09 66.2 80 42.5
A04p08920 Brassica napus HOM05D002626 ORTHO05D002749 2.2e-09 65.9 90 42.2
Manes.03G187300 Manihot esculenta HOM05D002626 ORTHO05D002749 2.2e-09 65.9 93 39.8
Lj2P1180T46 Lonicera japonica HOM05D002626 ORTHO05D002749 2.9e-09 65.5 81 44.4
Rhsim02G0017100 Rhododendron simsii HOM05D002626 ORTHO05D002749 2.9e-09 65.5 102 40.2
DCAR_030584 Daucus carota HOM05D002626 ORTHO05D002749 3.8e-09 65.1 64 51.6
Oeu006225.1 Olea europaea HOM05D002626 ORTHO05D002749 3.8e-09 65.1 105 41.0
Prupe.1G148100 Prunus persica HOM05D002626 ORTHO05D002749 3.8e-09 65.1 115 39.1
Cc01_g19870 Coffea canephora HOM05D002626 ORTHO05D002749 5.0e-09 64.7 75 48.0
MD16G1180600 Malus domestica HOM05D002626 ORTHO05D002749 5.0e-09 64.7 106 40.6
PGSC0003DMG400012765 Solanum tuberosum HOM05D002626 ORTHO05D002749 5.0e-09 64.7 103 36.9
Aqoxy2G03206 Aquilegia oxysepala HOM05D002626 ORTHO05D002749 6.5e-09 64.3 100 40.0
Aqoxy5G00555 Aquilegia oxysepala HOM05D002626 ORTHO05D002749 6.5e-09 64.3 64 51.6
Duzib151G1123 Durio zibethinus HOM05D002626 ORTHO05D002749 6.5e-09 64.3 104 41.3
Sopen01g032140 Solanum pennellii HOM05D002626 ORTHO05D002749 6.5e-09 64.3 101 36.6
Gohir.A02G044500 Gossypium hirsutum HOM05D002626 ORTHO05D002749 1.1e-08 63.5 103 40.8
Thecc.04G271100 Theobroma cacao HOM05D002626 ORTHO05D002749 1.1e-08 63.5 108 39.8
Gohir.D02G050400 Gossypium hirsutum HOM05D002626 ORTHO05D002749 1.5e-08 63.2 103 40.8
Gorai.005G055700 Gossypium raimondii HOM05D002626 ORTHO05D002749 1.5e-08 63.2 103 40.8
Nitab4.5_0000059g0080 Nicotiana tabacum HOM05D002626 ORTHO05D002749 1.5e-08 63.2 103 37.9
PSO407G0431 Papaver somniferum HOM05D002626 ORTHO05D002749 1.5e-08 63.2 86 43.0
PSO170G6443 Papaver somniferum HOM05D002626 ORTHO05D002749 1.9e-08 62.8 86 43.0
Duzib212G0333 Durio zibethinus HOM05D002626 ORTHO05D002749 3.2e-08 62.0 106 39.6
CDE02G0849 Ceratophyllum demersum HOM05D002626 ORTHO05D002749 4.2e-08 61.6 95 37.9
Gohir.A09G231500 Gossypium hirsutum HOM05D002626 ORTHO05D002749 4.2e-08 61.6 108 38.9
Gohir.D09G232600 Gossypium hirsutum HOM05D002626 ORTHO05D002749 4.2e-08 61.6 108 38.9
Gorai.006G255500 Gossypium raimondii HOM05D002626 ORTHO05D002749 4.2e-08 61.6 108 38.9
Nitab4.5_0000535g0150 Nicotiana tabacum HOM05D002626 ORTHO05D002749 4.2e-08 61.6 103 36.9
Oeu047888.1 Olea europaea HOM05D002626 ORTHO05D002749 4.2e-08 61.6 106 41.5
CDE09G1249 Ceratophyllum demersum HOM05D002626 ORTHO05D002749 7.2e-08 60.8 95 38.9
COL.COLO4_13981 Corchorus olitorius HOM05D002626 ORTHO05D002749 9.4e-08 60.5 110 40.0
Potri.008G199000 Populus trichocarpa HOM05D002626 ORTHO05D002749 1.2e-07 60.1 107 37.4
Sabra08G0161600 Salix brachista HOM05D002626 ORTHO05D002749 1.6e-07 59.7 107 38.3
SEGI_28940 Sequoiadendron giganteum HOM05D002626 ORTHO05D002749 1.6e-07 59.7 111 36.9
CSS0004520 Camellia sinensis var. sinensis HOM05D002626 ORTHO05D002749 2.1e-07 59.3 105 37.1
Atru.chr4.2691 Acer truncatum HOM05D002626 ORTHO05D002749 2.7e-07 58.9 104 36.5
Sc19g0004690 Simmondsia chinensis HOM05D002626 ORTHO05D002749 6.1e-07 57.8 65 43.1
MBI17_g29026_MAGBIO Magnolia biondii HOM05D002626 ORTHO05D002749 8.0e-07 57.4 96 40.6
CiPaw.02G089900 Carya illinoinensis HOM05D002626 ORTHO05D002749 1.0e-06 57.0 72 45.8
Oeu021629.1 Olea europaea HOM05D002626 ORTHO05D002749 1.8e-06 56.2 73 38.4
Oeu027127.1 Olea europaea HOM05D002626 ORTHO05D002749 2.3e-06 55.8 64 48.4
Lj3P805T49 Lonicera japonica HOM05D002626 ORTHO05D002749 3.0e-06 55.5 75 44.0
SalBow2G1774 Salvia bowleyana HOM05D002626 ORTHO05D002749 4.0e-06 55.1 73 37.0
SalBow2G2417 Salvia bowleyana HOM05D002626 ORTHO05D002749 4.0e-06 55.1 73 37.0
Ciclev10005126m.g Citrus clementina HOM05D002626 ORTHO05D002749 6.7e-06 54.3 103 35.0
CARHR218610 Cardamine hirsuta HOM05D002626 ORTHO05D002749 8.8e-06 53.9 92 37.0
unitig_26.g8939 Utricularia gibba HOM05D002626 ORTHO05D002749 8.8e-06 53.9 65 43.1


User provided reference genes

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