Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb233800 Zea mays HOM05D005434 ORTHO05D006412 0.0e+00 1294.6 709 100.0
Os10g0405500 Oryza sativa ssp. japonica HOM05D005434 ORTHO05D006412 1.0e-171 607.8 855 51.2
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 1.3e-33 149.1 664 26.8
HPP92_011320 Vanilla planifolia HOM05D005434 ORTHO05D006412 3.8e-33 147.5 740 27.8
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 1.9e-32 145.2 686 27.6
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 3.3e-32 144.4 698 27.8
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 5.6e-32 143.7 658 28.1
Lj1A7G43 Lonicera japonica HOM05D005434 ORTHO05D006412 7.3e-32 143.3 158 46.8
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 2.1e-31 141.7 651 27.3
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 2.8e-31 141.4 663 27.6
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 8.0e-31 139.8 707 26.0
Lalb_Chr02g0147201 Lupinus albus HOM05D005434 ORTHO05D006412 1.4e-30 139.0 178 44.9
PGR142G2929 Punica granatum HOM05D005434 ORTHO05D006412 1.4e-30 139.0 283 33.9
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 3.0e-30 137.9 712 26.3
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 8.9e-30 136.3 668 26.5
BcaC02g12619 Brassica carinata HOM05D005434 ORTHO05D006412 1.5e-29 135.6 639 26.8
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 2.6e-29 134.8 634 27.4
Actinidia20964 Actinidia chinensis HOM05D005434 ORTHO05D006412 3.4e-29 134.4 716 27.5
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 3.4e-29 134.4 761 25.4
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 4.4e-29 134.0 664 26.4
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 4.4e-29 134.0 659 26.7
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 5.7e-29 133.7 550 28.7
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 5.7e-29 133.7 715 25.3
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 7.5e-29 133.3 678 27.3
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 7.5e-29 133.3 297 35.7
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 1.7e-28 132.1 665 26.3
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 2.2e-28 131.7 628 27.7
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 2.9e-28 131.3 178 40.4
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 3.7e-28 131.0 693 29.1
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 8.3e-28 129.8 715 25.7
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 1.8e-27 128.6 743 25.3
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 5.4e-27 127.1 710 26.5
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 5.4e-27 127.1 657 26.0
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 9.2e-27 126.3 668 27.5
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.2e-26 125.9 319 33.2
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 1.2e-26 125.9 267 34.5
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 2.0e-26 125.2 670 26.4
Lsat_1_v5_gn_9_7120 Lactuca sativa HOM05D005434 ORTHO05D006412 2.0e-26 125.2 167 40.7
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 2.7e-26 124.8 710 26.6
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 2.7e-26 124.8 319 32.9
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 2.7e-26 124.8 743 25.8
GSVIVG01028239001 Vitis vinifera HOM05D005434 ORTHO05D006412 2.7e-26 124.8 140 45.0
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 4.6e-26 124.0 604 28.3
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 1.0e-25 122.9 631 26.3
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 1.3e-25 122.5 690 27.0
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 1.7e-25 122.1 667 27.4
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 2.3e-25 121.7 620 28.9
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 4.3e-24 117.5 677 24.8
PSO210G4596 Papaver somniferum HOM05D005434 ORTHO05D006412 7.3e-24 116.7 702 25.1
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 9.5e-24 116.3 529 28.4
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 2.8e-23 114.8 671 26.7
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.8e-23 114.8 566 28.3
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 3.6e-23 114.4 667 24.3
CDE02G0039 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 3.6e-23 114.4 175 37.1
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 3.6e-23 114.4 703 25.7
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 1.0e-22 112.8 670 25.2
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 2.3e-22 111.7 675 25.9
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 6.8e-22 110.2 669 25.0
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 8.9e-22 109.8 675 25.0
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 8.9e-22 109.8 696 26.3
CAN.G179.30 Capsicum annuum HOM05D005434 ORTHO05D006412 2.0e-21 108.6 639 24.6
MBI19_g04828_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 2.0e-21 108.6 737 25.4
AUR62011691 Chenopodium quinoa HOM05D005434 ORTHO05D006412 3.4e-21 107.8 622 26.4
Sc17g0000050 Simmondsia chinensis HOM05D005434 ORTHO05D006412 3.4e-21 107.8 173 32.9
PGSC0003DMG400001122 Solanum tuberosum HOM05D005434 ORTHO05D006412 4.4e-21 107.5 561 26.7
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 9.8e-21 106.3 683 24.7
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 1.3e-20 105.9 617 26.3
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 1.3e-20 105.9 639 25.4
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 2.2e-20 105.1 671 26.2
DCAR_002941 Daucus carota HOM05D005434 ORTHO05D006412 2.9e-20 104.8 632 26.1
Dinv33178 Davidia involucrata HOM05D005434 ORTHO05D006412 3.7e-20 104.4 105 50.5
Peaxi162Scf00309g00625 Petunia axillaris HOM05D005434 ORTHO05D006412 3.7e-20 104.4 690 25.8
Solyc01g079080.3 Solanum lycopersicum HOM05D005434 ORTHO05D006412 6.4e-20 103.6 550 25.8
Sopen01g030590 Solanum pennellii HOM05D005434 ORTHO05D006412 6.4e-20 103.6 557 25.7
SHI34042 Sapria himalayana HOM05D005434 ORTHO05D006412 8.3e-20 103.2 682 24.6
CiPaw.07G126400 Carya illinoinensis HOM05D005434 ORTHO05D006412 1.1e-19 102.8 120 43.3
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 1.4e-19 102.4 264 29.9
Sed0005889 Sechium edule HOM05D005434 ORTHO05D006412 1.9e-19 102.1 661 25.1
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 3.2e-19 101.3 622 29.3
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 5.4e-19 100.5 686 25.2
Nitab4.5_0000222g0380 Nicotiana tabacum HOM05D005434 ORTHO05D006412 2.0e-18 98.6 638 24.9
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 2.7e-18 98.2 662 24.2
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 4.6e-18 97.4 705 25.0
SGA_v2.0_scaffold310G48189 Striga asiatica HOM05D005434 ORTHO05D006412 7.8e-18 96.7 656 24.7
ClCG02G017720 Citrullus lanatus HOM05D005434 ORTHO05D006412 1.7e-17 95.5 678 25.1
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 2.3e-17 95.1 611 26.8
Sc17g0000070 Simmondsia chinensis HOM05D005434 ORTHO05D006412 3.0e-17 94.7 546 26.4
Sed0026347 Sechium edule HOM05D005434 ORTHO05D006412 3.9e-17 94.4 522 24.5
Ciclev10023478m.g Citrus clementina HOM05D005434 ORTHO05D006412 6.6e-17 93.6 95 48.4
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 1.1e-16 92.8 739 23.8
Cc01_g21750 Coffea canephora HOM05D005434 ORTHO05D006412 9.5e-16 89.7 687 24.7
CsaV3_6G012840 Cucumis sativus L. HOM05D005434 ORTHO05D006412 9.5e-16 89.7 639 25.2
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 1.4e-14 85.9 671 24.1
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 2.3e-14 85.1 622 23.6
unitig_62.g23901 Utricularia gibba HOM05D005434 ORTHO05D006412 2.3e-14 85.1 142 34.5
FAN28G1136 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.2e-13 82.8 718 24.4
MELO3C013628.2 Cucumis melo HOM05D005434 ORTHO05D006412 2.2e-12 78.6 614 24.8
SGA_v2.0_scaffold417G51248 Striga asiatica HOM05D005434 ORTHO05D006412 4.1e-11 74.3 748 23.3
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.7e-10 71.6 625 25.3
Eucgr.K00557 Eucalyptus grandis HOM05D005434 ORTHO05D006412 6.0e-10 70.5 668 22.8
Nitab4.5_0003092g0060 Nicotiana tabacum HOM05D005434 ORTHO05D006412 7.8e-10 70.1 707 23.2
SEGI_30180 Sequoiadendron giganteum HOM05D005434 ORTHO05D006412 5.1e-09 67.4 290 25.5
SMO367G0284 Selaginella moellendorffii HOM05D022252 ORTHO05D006993 1.1e-08 66.2 214 25.7
BcaB07g33880 Brassica carinata HOM05D005434 ORTHO05D006412 2.1e-07 62.0 399 24.3
BcaC01g05050 Brassica carinata HOM05D005434 ORTHO05D006412 1.1e-06 59.7 70 42.9
CDE08G1326 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 3.1e-06 58.2 66 40.9


User provided reference genes

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