Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb231620 Zea mays HOM05D006276 ORTHO05D007724 1.2e-186 656.4 334 100.0
Os02g0135600 Oryza sativa ssp. japonica HOM05D006276 ORTHO05D007724 2.0e-133 479.6 340 73.8
TAR626G0576 Trochodendron aralioides HOM05D006276 ORTHO05D007724 2.7e-69 266.5 336 44.9
HPP92_004831 Vanilla planifolia HOM05D006276 ORTHO05D007724 1.7e-68 263.8 341 45.2
GSVIVG01035412001 Vitis vinifera HOM05D006276 ORTHO05D007724 4.9e-63 245.7 335 43.0
CDE06G0120 Ceratophyllum demersum HOM05D006276 ORTHO05D007724 4.1e-62 242.7 337 44.5
Solyc11g070020.3 Solanum lycopersicum HOM05D006276 ORTHO05D007724 5.4e-62 242.3 335 42.4
Sopen11g028700 Solanum pennellii HOM05D006276 ORTHO05D007724 7.1e-62 241.9 335 42.4
TAR383G0425 Trochodendron aralioides HOM05D006276 ORTHO05D007724 2.7e-61 240.0 338 42.6
PSO210G3453 Papaver somniferum HOM05D006276 ORTHO05D007724 3.5e-61 239.6 334 42.8
Manes.16G079900 Manihot esculenta HOM05D006276 ORTHO05D007724 4.6e-61 239.2 335 41.8
Potri.006G230000 Populus trichocarpa HOM05D006276 ORTHO05D007724 7.8e-61 238.4 335 41.5
PGSC0003DMG400025517 Solanum tuberosum HOM05D006276 ORTHO05D007724 1.0e-60 238.0 335 41.8
Actinidia01190 Actinidia chinensis HOM05D006276 ORTHO05D007724 1.7e-60 237.3 335 41.5
Hund19457 Selenicereus undatus HOM05D006276 ORTHO05D007724 2.3e-60 236.9 334 42.2
Aqoxy5G01259 Aquilegia oxysepala HOM05D006276 ORTHO05D007724 3.9e-60 236.1 338 44.1
Hma1.2p1_0482F.1_g162490 Hydrangea macrophylla HOM05D006276 ORTHO05D007724 3.9e-60 236.1 336 41.1
Dinv27981 Davidia involucrata HOM05D006276 ORTHO05D007724 5.1e-60 235.7 337 42.4
Sabra06G0178200 Salix brachista HOM05D006276 ORTHO05D007724 6.6e-60 235.3 365 39.7
Eucgr.C03044 Eucalyptus grandis HOM05D006276 ORTHO05D007724 1.1e-59 234.6 335 43.0
SGA_v2.0_scaffold169G38688 Striga asiatica HOM05D006276 ORTHO05D007724 1.1e-59 234.6 337 42.1
PSO210G2260 Papaver somniferum HOM05D006276 ORTHO05D007724 1.9e-59 233.8 334 42.5
EL10Ac2g03891 Beta vulgaris HOM05D006276 ORTHO05D007724 2.8e-58 229.9 336 43.8
CANSAT25G3436 Cannabis sativa HOM05D006276 ORTHO05D007724 2.8e-58 229.9 336 41.4
SalBow1G4959 Salvia bowleyana HOM05D006276 ORTHO05D007724 1.1e-57 228.0 345 41.2
COL.COLO4_21052 Corchorus olitorius HOM05D006276 ORTHO05D007724 1.4e-57 227.6 336 40.5
Lj7A273T8 Lonicera japonica HOM05D006276 ORTHO05D007724 2.3e-57 226.9 337 40.4
RcHm_v2.0_Chr6g0290791 Rosa chinensis HOM05D006276 ORTHO05D007724 2.3e-57 226.9 337 40.7
QL02p001268 Quercus lobata HOM05D006276 ORTHO05D007724 8.9e-57 224.9 336 39.6
MSTRG.11659 Avicennia marina HOM05D006276 ORTHO05D007724 1.2e-56 224.6 339 42.2
Glyma.17G229400 Glycine max HOM05D006276 ORTHO05D007724 1.5e-56 224.2 335 40.9
Nitab4.5_0003550g0010 Nicotiana tabacum HOM05D006276 ORTHO05D007724 1.5e-56 224.2 336 40.8
Lj5g0000642 Lotus japonicus HOM05D006276 ORTHO05D007724 2.0e-56 223.8 335 39.4
Peaxi162Scf00247g00720 Petunia axillaris HOM05D006276 ORTHO05D007724 2.0e-56 223.8 336 40.5
Cc08_g10550 Coffea canephora HOM05D006276 ORTHO05D007724 2.6e-56 223.4 334 39.5
DCAR_004430 Daucus carota HOM05D006276 ORTHO05D007724 3.4e-56 223.0 335 41.2
Gorai.009G045400 Gossypium raimondii HOM05D006276 ORTHO05D007724 3.4e-56 223.0 336 39.3
RcHm_v2.0_Chr6g0310851 Rosa chinensis HOM05D006276 ORTHO05D007724 4.4e-56 222.6 334 40.4
Migut.E01562 Erythranthe guttata HOM05D006276 ORTHO05D007724 5.8e-56 222.2 336 42.0
MD15G1060500 Malus domestica HOM05D006276 ORTHO05D007724 1.3e-55 221.1 335 39.7
Thecc.09G053300 Theobroma cacao HOM05D006276 ORTHO05D007724 1.3e-55 221.1 336 39.9
AUR62022071 Chenopodium quinoa HOM05D006276 ORTHO05D007724 3.8e-55 219.5 334 41.3
CiPaw.16G028900 Carya illinoinensis HOM05D006276 ORTHO05D007724 4.9e-55 219.2 334 39.5
Duzib168G0463 Durio zibethinus HOM05D006276 ORTHO05D007724 6.4e-55 218.8 336 39.6
Ciclev10008931m.g Citrus clementina HOM05D006276 ORTHO05D007724 8.4e-55 218.4 336 40.5
Nitab4.5_0001107g0140 Nicotiana tabacum HOM05D006276 ORTHO05D007724 1.1e-54 218.0 338 40.2
Ca_13170_v3 Cicer arietinum L. HOM05D006276 ORTHO05D007724 7.1e-54 215.3 335 40.6
MD08G1060900 Malus domestica HOM05D006276 ORTHO05D007724 7.1e-54 215.3 335 40.9
FvH4_2g31970 Fragaria vesca HOM05D006276 ORTHO05D007724 9.2e-54 214.9 335 40.3
PSO478G1664 Papaver somniferum HOM05D006276 ORTHO05D007724 1.2e-53 214.5 336 38.7
Actinidia18190 Actinidia chinensis HOM05D006276 ORTHO05D007724 2.7e-53 213.4 334 38.9
VMungo0647G0182 Vigna mungo HOM05D006276 ORTHO05D007724 2.7e-53 213.4 335 40.0
ClCG08G017020 Citrullus lanatus HOM05D006276 ORTHO05D007724 3.5e-53 213.0 335 41.2
Rhsim07G0142500 Rhododendron simsii HOM05D006276 ORTHO05D007724 4.6e-53 212.6 335 39.4
Nn3g20166 Nelumbo nucifera HOM05D006276 ORTHO05D007724 7.8e-53 211.8 280 41.4
Phvul.001G034700 Phaseolus vulgaris HOM05D006276 ORTHO05D007724 7.8e-53 211.8 335 39.7
Lsat_1_v5_gn_3_24381 Lactuca sativa HOM05D006276 ORTHO05D007724 1.0e-52 211.5 336 39.9
THA.LOC104811244 Tarenaya hassleriana HOM05D006276 ORTHO05D007724 1.0e-52 211.5 336 41.7
Sed0014483 Sechium edule HOM05D006276 ORTHO05D007724 1.3e-52 211.1 336 40.2
CsaV3_2G025580 Cucumis sativus L. HOM05D006276 ORTHO05D007724 2.3e-52 210.3 335 40.0
TWI34G0536 Tripterygium wilfordii HOM05D006276 ORTHO05D007724 3.0e-52 209.9 336 40.5
arahy.Tifrunner.gnm1.ann1.PS3ZFP Arachis hypogaea HOM05D006276 ORTHO05D007724 3.9e-52 209.5 337 39.8
Sed0008348 Sechium edule HOM05D006276 ORTHO05D007724 6.6e-52 208.8 335 38.5
Carub.0006s1034 Capsella rubella HOM05D006276 ORTHO05D007724 1.5e-51 207.6 336 40.5
ATR0564G292 Amborella trichopoda HOM05D006276 ORTHO05D007724 1.9e-51 207.2 315 43.5
HanXRQChr17g0538201 Helianthus annuus HOM05D006276 ORTHO05D007724 2.5e-51 206.8 339 38.6
Medtr1g016410 Medicago truncatula HOM05D006276 ORTHO05D007724 7.3e-51 205.3 335 38.8
Thhalv10014178m.g Eutrema salsugineum HOM05D006276 ORTHO05D007724 9.6e-51 204.9 340 40.9
Lalb_Chr14g0367711 Lupinus albus HOM05D006276 ORTHO05D007724 1.2e-50 204.5 337 38.0
arahy.Tifrunner.gnm1.ann1.C6FL8N Arachis hypogaea HOM05D006276 ORTHO05D007724 1.6e-50 204.1 335 38.2
SHI18737 Sapria himalayana HOM05D006276 ORTHO05D007724 3.6e-50 203.0 340 37.6
TPR.G13142 Trifolium pratense HOM05D006276 ORTHO05D007724 3.6e-50 203.0 335 37.9
Atru.chr7.1056 Acer truncatum HOM05D006276 ORTHO05D007724 1.8e-49 200.7 340 38.5
Actinidia14712 Actinidia chinensis HOM05D006276 ORTHO05D007724 2.4e-49 200.3 334 37.7
Pp3c1_29470 Physcomitrium patens HOM05D006276 ORTHO05D007724 2.4e-49 200.3 346 40.5
AUR62009155 Chenopodium quinoa HOM05D006276 ORTHO05D007724 5.2e-49 199.1 360 38.3
Pp3c14_20160 Physcomitrium patens HOM05D006276 ORTHO05D007724 1.2e-48 198.0 339 38.9
BolC3t13112H Brassica oleracea HOM05D006276 ORTHO05D007724 2.0e-48 197.2 337 38.9
PSO782G4309 Papaver somniferum HOM05D006276 ORTHO05D007724 2.0e-48 197.2 334 38.6
C03p06010 Brassica napus HOM05D006276 ORTHO05D007724 9.9e-48 194.9 336 39.6
BraA10t44656Z Brassica rapa HOM05D006276 ORTHO05D007724 1.7e-47 194.1 337 39.2
AagrBONN_evm.TU.Sc2ySwM_117.3789 Anthoceros agrestis HOM05D006276 ORTHO05D007724 2.2e-47 193.7 343 35.9
CDE04G1132 Ceratophyllum demersum HOM05D000032 ORTHO05D002561 2.2e-47 193.7 280 42.9
BraA03t09860Z Brassica rapa HOM05D006276 ORTHO05D007724 2.9e-47 193.4 335 37.9
AT5G11810 Arabidopsis thaliana HOM05D006276 ORTHO05D007724 4.9e-47 192.6 339 38.3
A10p25940 Brassica napus HOM05D006276 ORTHO05D007724 8.4e-47 191.8 337 38.6
A03p05210 Brassica napus HOM05D006276 ORTHO05D007724 1.1e-46 191.4 335 38.2
C09p65020 Brassica napus HOM05D006276 ORTHO05D007724 1.1e-46 191.4 340 39.1
Cfa017950 Carpinus fangiana HOM05D006276 ORTHO05D007724 1.1e-46 191.4 235 42.6
BolC9t59330H Brassica oleracea HOM05D006276 ORTHO05D007724 3.2e-46 189.9 339 38.6
Gohir.D05G044300 Gossypium hirsutum HOM05D006276 ORTHO05D007724 4.2e-46 189.5 337 37.1
Sp6g31790 Schrenkiella parvula HOM05D006276 ORTHO05D007724 4.2e-46 189.5 336 39.3
Cpa.g.sc7.176 Carica papaya HOM05D006276 ORTHO05D007724 1.2e-45 188.0 228 46.1
Oeu003983.2 Olea europaea HOM05D006276 ORTHO05D007724 1.6e-45 187.6 335 36.4
BcaC04g19193 Brassica carinata HOM05D006276 ORTHO05D007724 2.7e-45 186.8 342 38.0
Sc09g0009760 Simmondsia chinensis HOM05D006276 ORTHO05D007724 1.0e-44 184.9 305 38.7
Glyma.14G094000 Glycine max HOM05D006276 ORTHO05D007724 1.7e-44 184.1 230 45.2
FAN24G2654 Fragaria x ananassa HOM05D006276 ORTHO05D007724 2.3e-44 183.7 405 33.3
vmacro14246 Vaccinium macrocarpon HOM05D006276 ORTHO05D007724 1.1e-43 181.4 269 37.5
Mapoly0103s0015 Marchantia polymorpha HOM05D006276 ORTHO05D007724 1.9e-43 180.6 341 34.3
CARHR201350 Cardamine hirsuta HOM05D006276 ORTHO05D007724 2.5e-43 180.3 282 39.4
SEGI_30057 Sequoiadendron giganteum HOM05D006276 ORTHO05D007724 8.1e-42 175.3 319 37.6
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 1.4e-41 174.5 229 44.5
BcaB01g05452 Brassica carinata HOM05D006276 ORTHO05D007724 5.3e-41 172.6 334 36.5
AL6G22560 Arabidopsis lyrata HOM05D006276 ORTHO05D007724 4.5e-40 169.5 236 40.7
Haze_18196 Corylus avellana HOM05D006276 ORTHO05D007724 1.3e-39 167.9 336 34.2
Aa31LG3G15390 Aethionema arabicum HOM05D006276 ORTHO05D007724 2.2e-39 167.2 341 35.8
CSS0027263 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 8.4e-39 165.2 235 38.7
FAN15G3491 Fragaria x ananassa HOM05D006276 ORTHO05D007724 7.9e-37 158.7 308 35.7
Lj7P276T14 Lonicera japonica HOM05D006276 ORTHO05D007724 1.0e-36 158.3 165 47.3
CiPaw.15G039400 Carya illinoinensis HOM05D006276 ORTHO05D007724 1.3e-36 157.9 233 40.3
SMO117G0325 Selaginella moellendorffii HOM05D006276 ORTHO05D007724 1.9e-35 154.1 334 34.7
MELO3C010755.2 Cucumis melo HOM05D006276 ORTHO05D007724 2.5e-35 153.7 335 36.1
PGR044G2277 Punica granatum HOM05D006276 ORTHO05D007724 9.6e-35 151.8 335 35.5
Gohir.A05G042600 Gossypium hirsutum HOM05D006276 ORTHO05D007724 1.6e-34 151.0 284 34.5
Ah.10g034420 Amaranthus hybridus HOM05D006276 ORTHO05D007724 8.4e-31 138.7 334 32.0
Prupe.1G412500 Prunus persica HOM05D006276 ORTHO05D007724 4.2e-30 136.3 277 36.8
Psat6g020720 Pisum sativum HOM05D006276 ORTHO05D007724 9.3e-30 135.2 197 40.1
FAN27G2524 Fragaria x ananassa HOM05D006276 ORTHO05D007724 2.1e-29 134.0 241 35.7
FAN20G3006 Fragaria x ananassa HOM05D006276 ORTHO05D007724 3.1e-25 120.2 306 32.4
PSO210G7329 Papaver somniferum HOM05D006276 ORTHO05D007724 1.0e-20 105.1 228 34.6
Oeu018645.1 Olea europaea HOM05D006276 ORTHO05D007724 2.1e-13 80.9 54 66.7


User provided reference genes

Program Settings