Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb231190 Zea mays HOM05D001798 ORTHO05D004054 7.9e-61 236.9 116 100.0
Zm00001eb192890 Zea mays HOM05D001798 ORTHO05D004054 2.6e-56 221.9 115 93.9
Os02g0785000 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D004054 1.1e-41 173.3 128 69.5
Os09g0432900 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D004054 1.1e-22 110.2 108 52.8
SEGI_31451 Sequoiadendron giganteum HOM05D001798 ORTHO05D004054 1.1e-22 110.2 89 58.4
Os09g0433000 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D004054 7.2e-22 107.5 113 49.6
CiPaw.07G191600 Carya illinoinensis HOM05D001798 ORTHO05D004054 9.4e-22 107.1 106 49.1
MBI16_g35930_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D004054 1.2e-21 106.7 106 50.9
Nitab4.5_0002974g0020 Nicotiana tabacum HOM05D001798 ORTHO05D004054 1.6e-21 106.3 97 48.5
Aqoxy7G03058 Aquilegia oxysepala HOM05D001798 ORTHO05D004054 2.7e-21 105.5 103 47.6
Os09g0433300 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D004054 2.7e-21 105.5 111 52.3
Aa31LG3G13370 Aethionema arabicum HOM05D001798 ORTHO05D004054 4.7e-21 104.8 95 52.6
CANSAT11G1300 Cannabis sativa HOM05D001798 ORTHO05D004054 4.7e-21 104.8 98 52.0
Sabra18G0080800 Salix brachista HOM05D001798 ORTHO05D004054 4.7e-21 104.8 95 53.7
Zm00001eb313700 Zea mays HOM05D001798 ORTHO05D004054 8.0e-21 104.0 109 49.5
Hma1.2p1_1710F.1_g298660 Hydrangea macrophylla HOM05D001798 ORTHO05D004054 1.0e-20 103.6 95 53.7
TAR626G0540 Trochodendron aralioides HOM05D001798 ORTHO05D004054 1.0e-20 103.6 99 53.5
EL10Ac8g18276 Beta vulgaris HOM05D001798 ORTHO05D004054 1.4e-20 103.2 93 52.7
Os02g0785200 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D004054 1.4e-20 103.2 109 48.6
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 1.4e-20 103.2 100 54.0
BcaC04g19962 Brassica carinata HOM05D001798 ORTHO05D004054 1.8e-20 102.8 93 53.8
A10p14930 Brassica napus HOM05D001798 ORTHO05D004054 1.8e-20 102.8 93 54.8
C09p49340 Brassica napus HOM05D001798 ORTHO05D004054 1.8e-20 102.8 93 53.8
BolC9t57785H Brassica oleracea HOM05D001798 ORTHO05D004054 1.8e-20 102.8 93 53.8
BraA10t43571Z Brassica rapa HOM05D001798 ORTHO05D004054 1.8e-20 102.8 93 54.8
Duzib168G2084 Durio zibethinus HOM05D001798 ORTHO05D004054 1.8e-20 102.8 93 53.8
Migut.J01449 Erythranthe guttata HOM05D001798 ORTHO05D004054 1.8e-20 102.8 106 50.9
Prupe.1G087000 Prunus persica HOM05D001798 ORTHO05D004054 1.8e-20 102.8 95 52.6
A03p12790 Brassica napus HOM05D001798 ORTHO05D004054 2.3e-20 102.4 93 53.8
BraA03t10587Z Brassica rapa HOM05D001798 ORTHO05D004054 2.3e-20 102.4 93 53.8
Carub.0008s1800 Capsella rubella HOM05D001798 ORTHO05D004054 2.3e-20 102.4 93 53.8
ECA234G2885 Erigeron canadensis HOM05D001798 ORTHO05D004054 2.3e-20 102.4 98 50.0
Potri.018G094000 Populus trichocarpa HOM05D001798 ORTHO05D004054 2.3e-20 102.4 95 53.7
Aqoxy7G03059 Aquilegia oxysepala HOM05D001798 ORTHO05D004054 3.0e-20 102.1 96 50.0
Ciclev10010309m.g Citrus clementina HOM05D001798 ORTHO05D004054 3.0e-20 102.1 99 52.5
Manes.14G151200 Manihot esculenta HOM05D001798 ORTHO05D004054 3.0e-20 102.1 95 52.6
RcHm_v2.0_Chr4g0402651 Rosa chinensis HOM05D001798 ORTHO05D004054 3.0e-20 102.1 95 52.6
Zm00001eb257210 Zea mays HOM05D001798 ORTHO05D004054 3.0e-20 102.1 107 47.7
AL8G33440 Arabidopsis lyrata HOM05D001798 ORTHO05D004054 4.0e-20 101.7 93 53.8
Eucgr.C00164 Eucalyptus grandis HOM05D001798 ORTHO05D004054 4.0e-20 101.7 96 50.0
Thhalv10014129m.g Eutrema salsugineum HOM05D001798 ORTHO05D004054 4.0e-20 101.7 93 54.8
MD13G1256400 Malus domestica HOM05D001798 ORTHO05D004054 4.0e-20 101.7 102 50.0
THA.LOC104811794 Tarenaya hassleriana HOM05D001798 ORTHO05D004054 4.0e-20 101.7 95 51.6
Ah.09g229800 Amaranthus hybridus HOM05D001798 ORTHO05D004054 5.2e-20 101.3 95 49.5
AT5G57500 Arabidopsis thaliana HOM05D001798 ORTHO05D004054 5.2e-20 101.3 93 52.7
BcaB01g04451 Brassica carinata HOM05D001798 ORTHO05D004054 5.2e-20 101.3 93 53.8
BcaC01g06484 Brassica carinata HOM05D001798 ORTHO05D004054 5.2e-20 101.3 93 53.8
C03p14950 Brassica napus HOM05D001798 ORTHO05D004054 5.2e-20 101.3 93 53.8
FAN17G1946 Fragaria x ananassa HOM05D001798 ORTHO05D004054 5.2e-20 101.3 95 51.6
Gohir.D08G094600 Gossypium hirsutum HOM05D001798 ORTHO05D004054 5.2e-20 101.3 99 51.5
Gorai.004G100500 Gossypium raimondii HOM05D001798 ORTHO05D004054 5.2e-20 101.3 99 51.5
Thecc.09G172000 Theobroma cacao HOM05D001798 ORTHO05D004054 5.2e-20 101.3 99 49.5
Atru.chr7.665 Acer truncatum HOM05D001798 ORTHO05D004054 6.8e-20 100.9 93 53.8
Cfa013515 Carpinus fangiana HOM05D001798 ORTHO05D004054 6.8e-20 100.9 95 52.6
DCAR_014705 Daucus carota HOM05D001798 ORTHO05D004054 6.8e-20 100.9 106 47.2
Dinv42732 Davidia involucrata HOM05D001798 ORTHO05D004054 6.8e-20 100.9 93 52.7
Dinv43369 Davidia involucrata HOM05D001798 ORTHO05D004054 6.8e-20 100.9 93 52.7
FAN07G2696 Fragaria x ananassa HOM05D001798 ORTHO05D004054 6.8e-20 100.9 95 51.6
FAN22G0803 Fragaria x ananassa HOM05D001798 ORTHO05D004054 6.8e-20 100.9 95 51.6
Nitab4.5_0000056g0140 Nicotiana tabacum HOM05D001798 ORTHO05D004054 6.8e-20 100.9 100 48.0
Solyc07g018200.1 Solanum lycopersicum HOM05D001798 ORTHO05D004054 6.8e-20 100.9 94 50.0
AL8G33500 Arabidopsis lyrata HOM05D001798 ORTHO05D004054 8.8e-20 100.5 93 52.7
CiPaw.08G037000 Carya illinoinensis HOM05D001798 ORTHO05D004054 8.8e-20 100.5 95 50.5
Os02g0785700 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D004054 8.8e-20 100.5 103 50.5
QL02p097589 Quercus lobata HOM05D001798 ORTHO05D004054 8.8e-20 100.5 95 52.6
AUR62040311 Chenopodium quinoa HOM05D001798 ORTHO05D004054 1.2e-19 100.1 93 51.6
Os05g0552200 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D004054 1.5e-19 99.8 106 50.9
Sed0007234 Sechium edule HOM05D001798 ORTHO05D004054 1.5e-19 99.8 93 50.5
GSVIVG01029189001 Vitis vinifera HOM05D001798 ORTHO05D004054 1.5e-19 99.8 89 55.1
FvH4_4g09410 Fragaria vesca HOM05D001798 ORTHO05D004054 2.0e-19 99.4 93 51.6
FAN12G1062 Fragaria x ananassa HOM05D001798 ORTHO05D004054 2.0e-19 99.4 93 51.6
Gohir.A08G085800 Gossypium hirsutum HOM05D001798 ORTHO05D004054 2.0e-19 99.4 97 52.6
CARHR271280 Cardamine hirsuta HOM05D001798 ORTHO05D004054 2.6e-19 99.0 93 53.8
AUR62033206 Chenopodium quinoa HOM05D001798 ORTHO05D004054 2.6e-19 99.0 93 51.6
PSO063G3105 Papaver somniferum HOM05D001798 ORTHO05D004054 2.6e-19 99.0 97 48.5
PSO170G6012 Papaver somniferum HOM05D001798 ORTHO05D004054 2.6e-19 99.0 97 48.5
CSS0045910 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D004054 3.4e-19 98.6 88 55.7
Cpa.g.sc52.13 Carica papaya HOM05D001798 ORTHO05D004054 3.4e-19 98.6 89 52.8
Lsat_1_v5_gn_5_86101 Lactuca sativa HOM05D001798 ORTHO05D004054 3.4e-19 98.6 104 44.2
SalBow1G1623 Salvia bowleyana HOM05D001798 ORTHO05D004054 3.4e-19 98.6 107 46.7
Sc14g0001170 Simmondsia chinensis HOM05D001798 ORTHO05D004054 3.4e-19 98.6 93 48.4
DCAR_014141 Daucus carota HOM05D001798 ORTHO05D004054 4.4e-19 98.2 104 46.2
Glyma.12G143100 Glycine max HOM05D001798 ORTHO05D004054 4.4e-19 98.2 93 52.7
COL.COLO4_32937 Corchorus olitorius HOM05D001798 ORTHO05D004054 7.5e-19 97.4 99 47.5
Lj4P251T53 Lonicera japonica HOM05D001798 ORTHO05D004054 7.5e-19 97.4 99 51.5
SpUn0864_0010 Schrenkiella parvula HOM05D001798 ORTHO05D004054 7.5e-19 97.4 93 50.5
ATR0580G411 Amborella trichopoda HOM05D001798 ORTHO05D004054 9.7e-19 97.1 109 47.7
MBI08_g16115_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D004054 9.7e-19 97.1 106 46.2
Prupe.2G131800 Prunus persica HOM05D001798 ORTHO05D004054 9.7e-19 97.1 96 46.9
QL04p030312 Quercus lobata HOM05D001798 ORTHO05D004054 9.7e-19 97.1 89 55.1
ClCG06G013280 Citrullus lanatus HOM05D001798 ORTHO05D004054 1.3e-18 96.7 93 48.4
MELO3C017470.2 Cucumis melo HOM05D001798 ORTHO05D004054 1.3e-18 96.7 93 48.4
CsaV3_1G031540 Cucumis sativus L. HOM05D001798 ORTHO05D004054 1.3e-18 96.7 93 48.4
Glyma.13G095800 Glycine max HOM05D001798 ORTHO05D004054 1.3e-18 96.7 108 46.3
Sed0019572 Sechium edule HOM05D001798 ORTHO05D004054 1.3e-18 96.7 105 45.7
TAR374G0433 Trochodendron aralioides HOM05D001798 ORTHO05D004054 1.3e-18 96.7 92 48.9
TWI32G1233 Tripterygium wilfordii HOM05D001798 ORTHO05D004054 1.7e-18 96.3 99 48.5
TAR374G0004 Trochodendron aralioides HOM05D001798 ORTHO05D004054 1.7e-18 96.3 107 43.9
HanXRQChr12g0365391 Helianthus annuus HOM05D001798 ORTHO05D004054 2.2e-18 95.9 103 42.7
PSO063G6888 Papaver somniferum HOM05D001798 ORTHO05D004054 2.2e-18 95.9 92 48.9
SGA_v2.0_scaffold66G22456 Striga asiatica HOM05D001798 ORTHO05D004054 2.2e-18 95.9 89 50.6
ECA236G0036 Erigeron canadensis HOM05D001798 ORTHO05D004054 2.8e-18 95.5 96 44.8
Oeu042153.1 Olea europaea HOM05D001798 ORTHO05D004054 2.8e-18 95.5 89 52.8
Potri.007G131000 Populus trichocarpa HOM05D001798 ORTHO05D004054 2.8e-18 95.5 89 51.7
Zm00001eb099920 Zea mays HOM05D001798 ORTHO05D004054 2.8e-18 95.5 106 49.1
PSO782G3665 Papaver somniferum HOM05D001798 ORTHO05D004054 3.7e-18 95.1 91 48.4
Prupe.1G086900 Prunus persica HOM05D001798 ORTHO05D004054 3.7e-18 95.1 93 50.5
PGR004G1186 Punica granatum HOM05D001798 ORTHO05D004054 4.8e-18 94.7 88 53.4
Rhsim01G0006000 Rhododendron simsii HOM05D001798 ORTHO05D004054 4.8e-18 94.7 96 45.8
Sabra07G0106400 Salix brachista HOM05D001798 ORTHO05D004054 4.8e-18 94.7 89 50.6
CSS0006028 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D004054 6.3e-18 94.4 83 57.8
CDE05G1198 Ceratophyllum demersum HOM05D001798 ORTHO05D004054 6.3e-18 94.4 97 47.4
CiPaw.13G026200 Carya illinoinensis HOM05D001798 ORTHO05D004054 8.3e-18 94.0 99 49.5
Dinv28246 Davidia involucrata HOM05D006811 ORTHO05D008419 8.3e-18 94.0 89 50.6
Lsat_1_v5_gn_2_71820 Lactuca sativa HOM05D001798 ORTHO05D004054 8.3e-18 94.0 88 51.1
Lsat_1_v5_gn_8_67081 Lactuca sativa HOM05D001798 ORTHO05D004054 8.3e-18 94.0 97 44.3
Oeu002682.1 Olea europaea HOM05D001798 ORTHO05D004054 8.3e-18 94.0 89 50.6
Haze_02855 Corylus avellana HOM05D001798 ORTHO05D004054 1.1e-17 93.6 88 52.3
Glyma.17G064200 Glycine max HOM05D001798 ORTHO05D004054 1.1e-17 93.6 96 49.0
HanXRQChr14g0443381 Helianthus annuus HOM05D001798 ORTHO05D004054 1.1e-17 93.6 89 51.7
TWI32G0974 Tripterygium wilfordii HOM05D001798 ORTHO05D004054 1.1e-17 93.6 93 45.2
Actinidia17162 Actinidia chinensis HOM05D001798 ORTHO05D004054 1.4e-17 93.2 89 51.7
Dinv19081 Davidia involucrata HOM05D001798 ORTHO05D004054 1.8e-17 92.8 89 49.4
RcHm_v2.0_Chr1g0347911 Rosa chinensis HOM05D001798 ORTHO05D004054 1.8e-17 92.8 92 48.9
Aqoxy3G04153 Aquilegia oxysepala HOM05D001798 ORTHO05D004054 2.4e-17 92.4 88 53.4
ATR0807G134 Amborella trichopoda HOM05D001798 ORTHO05D004054 3.1e-17 92.0 95 51.6
SalBow5G2650 Salvia bowleyana HOM05D001798 ORTHO05D004054 4.1e-17 91.7 95 47.4
Zm00001eb295000 Zea mays HOM05D001798 ORTHO05D004054 4.1e-17 91.7 96 50.0
BolC3t13937H Brassica oleracea HOM05D001798 ORTHO05D004054 5.3e-17 91.3 108 46.3
Phvul.003G146700 Phaseolus vulgaris HOM05D001798 ORTHO05D004054 5.3e-17 91.3 102 45.1
RhsimUnG0226600 Rhododendron simsii HOM05D001798 ORTHO05D004054 5.3e-17 91.3 94 47.9
Aqoxy7G03061 Aquilegia oxysepala HOM05D001798 ORTHO05D004054 7.0e-17 90.9 96 42.7
Actinidia40413 Actinidia chinensis HOM05D001798 ORTHO05D004054 9.1e-17 90.5 91 49.5
Aqoxy1G03924 Aquilegia oxysepala HOM05D001798 ORTHO05D004054 9.1e-17 90.5 93 45.2
Aqoxy1G03927 Aquilegia oxysepala HOM05D001798 ORTHO05D004054 9.1e-17 90.5 93 45.2
arahy.Tifrunner.gnm1.ann1.8J5KLD Arachis hypogaea HOM05D001798 ORTHO05D004054 9.1e-17 90.5 93 50.5
Ca_21216_v3 Cicer arietinum L. HOM05D001798 ORTHO05D004054 9.1e-17 90.5 96 45.8
Cc07_g12740 Coffea canephora HOM05D001798 ORTHO05D004054 9.1e-17 90.5 88 51.1
SGA_v2.0_scaffold69G23262 Striga asiatica HOM05D001798 ORTHO05D004054 9.1e-17 90.5 89 48.3
Lj4g0018809 Lotus japonicus HOM05D001798 ORTHO05D004054 1.2e-16 90.1 91 49.5
SalBow5G2569 Salvia bowleyana HOM05D001798 ORTHO05D004054 1.2e-16 90.1 95 46.3
TPR.G5367 Trifolium pratense HOM05D001798 ORTHO05D004054 1.2e-16 90.1 93 46.2
Medtr4g128310 Medicago truncatula HOM05D001798 ORTHO05D004054 1.6e-16 89.7 91 48.4
VMungo1215G1383 Vigna mungo HOM05D001798 ORTHO05D004054 1.6e-16 89.7 95 47.4
Manes.04G039400 Manihot esculenta HOM05D001798 ORTHO05D004054 2.0e-16 89.4 89 49.4
Rhsim10G0185400 Rhododendron simsii HOM05D001798 ORTHO05D004054 2.7e-16 89.0 90 48.9
TWI59G0989 Tripterygium wilfordii HOM05D001798 ORTHO05D004054 2.7e-16 89.0 89 49.4
PGR102G3119 Punica granatum HOM05D001798 ORTHO05D004054 4.5e-16 88.2 95 44.2
Migut.K00748 Erythranthe guttata HOM05D001798 ORTHO05D004054 5.9e-16 87.8 89 47.2
FvH4_7g10190 Fragaria vesca HOM05D001798 ORTHO05D004054 5.9e-16 87.8 92 46.7
Nn2g12712 Nelumbo nucifera HOM05D001798 ORTHO05D004054 1.7e-15 86.3 85 54.1
FAN10G0220 Fragaria x ananassa HOM05D001798 ORTHO05D004054 6.5e-15 84.3 88 47.7
FAN10G1981 Fragaria x ananassa HOM05D001798 ORTHO05D004054 8.5e-15 84.0 88 47.7
FAN06G2663 Fragaria x ananassa HOM05D001798 ORTHO05D004054 1.1e-14 83.6 88 46.6
CAN.G370.58 Capsicum annuum HOM05D001798 ORTHO05D004054 1.9e-14 82.8 89 43.8
FAN01G0318 Fragaria x ananassa HOM05D001798 ORTHO05D004054 2.5e-14 82.4 88 46.6
GSVIVG01029188001 Vitis vinifera HOM05D001798 ORTHO05D004054 3.2e-14 82.0 76 55.3
Solyc07g044820.1 Solanum lycopersicum HOM05D001798 ORTHO05D004054 4.2e-14 81.6 89 43.8
Nitab4.5_0006644g0040 Nicotiana tabacum HOM05D001798 ORTHO05D004054 1.2e-13 80.1 89 41.6
Nitab4.5_0006724g0060 Nicotiana tabacum HOM05D001798 ORTHO05D008467 1.6e-13 79.7 89 41.6
Migut.J01472 Erythranthe guttata HOM05D001798 ORTHO05D004054 2.1e-13 79.3 71 50.7
Haze_22111 Corylus avellana HOM05D001798 ORTHO05D004054 2.7e-13 79.0 95 45.3
Peaxi162Scf01158g00012 Petunia axillaris HOM05D001798 ORTHO05D004054 4.7e-13 78.2 89 42.7
ATR0580G361 Amborella trichopoda HOM05D001798 ORTHO05D004054 6.1e-13 77.8 93 39.8
Mapoly0009s0084 Marchantia polymorpha HOM05D001798 ORTHO05D004054 3.0e-12 75.5 94 41.5
AagrBONN_evm.TU.Sc2ySwM_228.2829 Anthoceros agrestis HOM05D001798 ORTHO05D004054 5.2e-12 74.7 88 44.3
Lj7P472T19 Lonicera japonica HOM05D001798 ORTHO05D004054 5.2e-12 74.7 72 52.8
CSS0049329 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D004054 4.4e-11 71.6 93 41.9
FvH4_7g10191 Fragaria vesca HOM05D001798 ORTHO05D004054 7.5e-11 70.9 84 44.0
Nitab4.5_0000056g0150 Nicotiana tabacum HOM05D001798 ORTHO05D004054 9.8e-11 70.5 66 47.0
Nitab4.5_0002974g0010 Nicotiana tabacum HOM05D001798 ORTHO05D004054 1.7e-10 69.7 62 50.0
Pp3c1_41710 Physcomitrium patens HOM05D001798 ORTHO05D004054 1.7e-10 69.7 89 39.3
CAN.G440.1 Capsicum annuum HOM05D001798 ORTHO05D004054 2.8e-10 68.9 60 46.7
FAN06G0768 Fragaria x ananassa HOM05D001798 ORTHO05D004054 3.7e-10 68.6 84 42.9
Rhsim03G0270800 Rhododendron simsii HOM05D001798 ORTHO05D004054 2.4e-09 65.9 96 39.6
CDE05G1667 Ceratophyllum demersum HOM05D001798 ORTHO05D004054 9.1e-09 63.9 70 45.7
Pp3c22_10390 Physcomitrium patens HOM05D001798 ORTHO05D004054 4.5e-08 61.6 105 32.4
FAN06G2545 Fragaria x ananassa HOM05D001798 ORTHO05D004054 5.9e-08 61.2 71 43.7
GSVIVG01029186001 Vitis vinifera HOM05D001798 ORTHO05D004054 1.0e-07 60.5 56 57.1
Cc06_g13360 Coffea canephora HOM05D001798 ORTHO05D004054 2.5e-06 55.8 56 53.6


User provided reference genes

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