Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb230930 Zea mays HOM05D002637 ORTHO05D009046 1.1e-94 350.1 201 100.0
Os02g0126600 Oryza sativa ssp. japonica HOM05D002637 ORTHO05D009046 2.2e-42 176.4 165 55.2
TAR629G0766 Trochodendron aralioides HOM05D002637 ORTHO05D009046 7.6e-19 98.2 162 35.2
CARHR245840 Cardamine hirsuta HOM05D002637 ORTHO05D009046 1.7e-18 97.1 130 40.8
AL7G13350 Arabidopsis lyrata HOM05D002637 ORTHO05D009046 2.2e-18 96.7 130 40.8
BcaNung03660 Brassica carinata HOM05D002637 ORTHO05D009046 2.2e-18 96.7 130 41.5
Carub.0007s0284 Capsella rubella HOM05D002637 ORTHO05D009046 2.2e-18 96.7 130 40.0
AT4G37445 Arabidopsis thaliana HOM05D002637 ORTHO05D009046 2.9e-18 96.3 130 40.8
TAR629G0936 Trochodendron aralioides HOM05D002637 ORTHO05D009046 8.4e-18 94.7 160 35.6
Migut.B01543 Erythranthe guttata HOM05D002637 ORTHO05D009046 1.1e-17 94.4 128 39.1
Thhalv10026444m.g Eutrema salsugineum HOM05D002637 ORTHO05D009046 1.4e-17 94.0 130 40.0
Sp7g35140 Schrenkiella parvula HOM05D002637 ORTHO05D009046 1.4e-17 94.0 130 39.2
ATR0057G030 Amborella trichopoda HOM05D002637 ORTHO05D009046 2.4e-17 93.2 159 35.2
BcaNung05079 Brassica carinata HOM05D002637 ORTHO05D009046 4.2e-17 92.4 130 39.2
BraA01t00144Z Brassica rapa HOM05D002637 ORTHO05D009046 9.3e-17 91.3 141 39.0
SGA_v2.0_scaffold153G36910 Striga asiatica HOM05D002637 ORTHO05D008095 1.2e-16 90.9 128 38.3
A01p01510 Brassica napus HOM05D002637 ORTHO05D009046 1.6e-16 90.5 141 39.0
Cfa011083 Carpinus fangiana HOM05D002637 ORTHO05D009046 1.6e-16 90.5 154 33.8
THA.LOC104807614 Tarenaya hassleriana HOM05D002637 ORTHO05D009046 1.6e-16 90.5 134 39.6
C01p01670 Brassica napus HOM05D002637 ORTHO05D009046 2.1e-16 90.1 141 38.3
BolC1t00161H Brassica oleracea HOM05D002637 ORTHO05D009046 2.1e-16 90.1 141 38.3
PSO063G5174 Papaver somniferum HOM05D002637 ORTHO05D009046 2.7e-16 89.7 174 33.9
HPP92_005363 Vanilla planifolia HOM05D002637 ORTHO05D009046 2.7e-16 89.7 173 29.5
Actinidia33504 Actinidia chinensis HOM05D002637 ORTHO05D009046 6.0e-16 88.6 131 38.9
TWI53G0102 Tripterygium wilfordii HOM05D002637 ORTHO05D009046 7.8e-16 88.2 126 36.5
VMungo0331G2001 Vigna mungo HOM05D002637 ORTHO05D009046 1.0e-15 87.8 157 33.8
unitig_8.g3841 Utricularia gibba HOM05D002637 ORTHO05D008095 1.3e-15 87.4 130 35.4
Duzib147G1684 Durio zibethinus HOM05D002637 ORTHO05D009046 3.9e-15 85.9 157 35.7
Manes.13G115300 Manihot esculenta HOM05D002637 ORTHO05D009046 3.9e-15 85.9 155 34.8
BcaNung02947 Brassica carinata HOM05D002637 ORTHO05D009046 5.1e-15 85.5 149 35.6
Medtr8g006765 Medicago truncatula HOM05D002637 ORTHO05D009046 5.1e-15 85.5 126 36.5
Potri.007G051200 Populus trichocarpa HOM05D002637 ORTHO05D009046 6.6e-15 85.1 130 36.9
Ciclev10026646m.g Citrus clementina HOM05D002637 ORTHO05D009046 8.7e-15 84.7 158 34.8
HanXRQChr16g0520331 Helianthus annuus HOM05D002637 ORTHO05D009046 1.9e-14 83.6 128 36.7
TPR.G12142 Trifolium pratense HOM05D002637 ORTHO05D009046 1.9e-14 83.6 161 34.8
EL10Ac1g00772 Beta vulgaris HOM05D002637 ORTHO05D009046 2.5e-14 83.2 157 35.7
Psat3g194760 Pisum sativum HOM05D002637 ORTHO05D009046 2.5e-14 83.2 128 37.5
ECA234G1562 Erigeron canadensis HOM05D002637 ORTHO05D009046 3.3e-14 82.8 128 37.5
FAN03G2438 Fragaria x ananassa HOM05D002637 ORTHO05D009046 3.3e-14 82.8 131 38.2
Lsat_1_v5_gn_4_46620 Lactuca sativa HOM05D002637 ORTHO05D009046 3.3e-14 82.8 128 35.9
TPR.G33150 Trifolium pratense HOM05D002637 ORTHO05D009046 3.3e-14 82.8 126 38.1
Haze_02819 Corylus avellana HOM05D002637 ORTHO05D009046 4.3e-14 82.4 123 36.6
PGR042G3993 Punica granatum HOM05D002637 ORTHO05D009046 5.6e-14 82.0 128 36.7
QL04p030668 Quercus lobata HOM05D002637 ORTHO05D009046 5.6e-14 82.0 128 35.2
arahy.Tifrunner.gnm1.ann1.TJ44DN Arachis hypogaea HOM05D002637 ORTHO05D009046 7.3e-14 81.6 160 31.9
FvH4_7g09940 Fragaria vesca HOM05D002637 ORTHO05D009046 7.3e-14 81.6 131 36.6
FAN06G1198 Fragaria x ananassa HOM05D000001 ORTHO05D009896 7.3e-14 81.6 131 36.6
Medtr4g094628 Medicago truncatula HOM05D002637 ORTHO05D009046 7.3e-14 81.6 156 32.7
FAN06G2425 Fragaria x ananassa HOM05D000001 ORTHO05D009896 9.6e-14 81.3 131 35.9
Lj1g0023703 Lotus japonicus HOM05D002637 ORTHO05D009046 9.6e-14 81.3 156 32.7
Manes.12G109800 Manihot esculenta HOM05D002637 ORTHO05D009046 9.6e-14 81.3 127 37.0
arahy.Tifrunner.gnm1.ann1.P225XX Arachis hypogaea HOM05D002637 ORTHO05D009046 1.3e-13 80.9 160 31.9
FAN01G0925 Fragaria x ananassa HOM05D002637 ORTHO05D009046 2.8e-13 79.7 131 35.9
Lalb_Chr13g0290561 Lupinus albus HOM05D002637 ORTHO05D009046 2.8e-13 79.7 126 34.9
vmacro21056 Vaccinium macrocarpon HOM05D002637 ORTHO05D009046 2.8e-13 79.7 131 36.6
CiPaw.14G021200 Carya illinoinensis HOM05D002637 ORTHO05D009046 4.8e-13 79.0 127 35.4
AUR62023418 Chenopodium quinoa HOM05D000001 ORTHO05D009896 4.8e-13 79.0 125 36.0
Ca_04041_v3 Cicer arietinum L. HOM05D002637 ORTHO05D008095 4.8e-13 79.0 126 36.5
Aqoxy3G02748 Aquilegia oxysepala HOM05D002637 ORTHO05D009046 6.2e-13 78.6 156 34.0
Cc02_g25010 Coffea canephora HOM05D002637 ORTHO05D009046 6.2e-13 78.6 128 33.6
Dinv43628 Davidia involucrata HOM05D002637 ORTHO05D009046 6.2e-13 78.6 126 37.3
Nn1g00869 Nelumbo nucifera HOM05D002637 ORTHO05D009046 6.2e-13 78.6 136 32.4
Psat4g225240 Pisum sativum HOM05D002637 ORTHO05D009046 6.2e-13 78.6 126 37.3
COL.COLO4_11517 Corchorus olitorius HOM05D002637 ORTHO05D009046 8.1e-13 78.2 145 32.4
Duzib187G0274 Durio zibethinus HOM05D002637 ORTHO05D009046 1.1e-12 77.8 133 35.3
Oeu063229.1 Olea europaea HOM05D002637 ORTHO05D009046 1.4e-12 77.4 131 35.1
Prupe.2G128200 Prunus persica HOM05D002637 ORTHO05D009046 1.8e-12 77.0 125 36.0
Ca_14060_v3 Cicer arietinum L. HOM05D002637 ORTHO05D009046 2.4e-12 76.6 126 36.5
Lj3g0027924 Lotus japonicus HOM05D002637 ORTHO05D009046 4.0e-12 75.9 126 34.1
Eucgr.E01572 Eucalyptus grandis HOM05D002637 ORTHO05D009046 5.3e-12 75.5 143 31.5
Thecc.01G067000 Theobroma cacao HOM05D002637 ORTHO05D009046 6.9e-12 75.1 133 30.8
MD07G1104600 Malus domestica HOM05D002637 ORTHO05D009046 2.6e-11 73.2 132 34.1
Sc02g0003060 Simmondsia chinensis HOM05D002637 ORTHO05D009046 4.5e-11 72.4 127 33.9
A01p01520 Brassica napus HOM05D002637 ORTHO05D009046 7.6e-11 71.6 143 33.6
BraA01t00145Z Brassica rapa HOM05D002637 ORTHO05D009046 7.6e-11 71.6 143 33.6
Sabra07G0045200 Salix brachista HOM05D002328 ORTHO05D002433 7.6e-11 71.6 151 30.5
TAR629G3341 Trochodendron aralioides HOM05D002637 ORTHO05D009046 1.3e-10 70.9 139 34.5
Atru.chr3.227 Acer truncatum HOM05D002637 ORTHO05D009046 3.8e-10 69.3 130 31.5
MSTRG.17133 Avicennia marina HOM05D002637 ORTHO05D009046 3.8e-10 69.3 127 30.7
Ca_24158_v3 Cicer arietinum L. HOM05D002637 ORTHO05D009046 3.8e-10 69.3 103 37.9
Nitab4.5_0003696g0080 Nicotiana tabacum HOM05D002637 ORTHO05D009046 6.4e-10 68.6 130 33.1
Rhsim01G0139600 Rhododendron simsii HOM05D002637 ORTHO05D009046 1.9e-09 67.0 104 41.3
MD07G1105300 Malus domestica HOM05D002637 ORTHO05D009046 7.1e-09 65.1 126 31.0
CANSAT21G1080 Cannabis sativa HOM05D002637 ORTHO05D009046 9.3e-09 64.7 125 28.8
Ca_14062_v3 Cicer arietinum L. HOM05D000534 ORTHO05D009046 1.6e-08 63.9 103 35.9
BraA01t00146Z Brassica rapa HOM05D002637 ORTHO05D016052 1.3e-07 60.8 113 36.3
Cpa.g.sc6.62 Carica papaya HOM05D003561 ORTHO05D004351 1.3e-07 60.8 151 30.5
AUR62013735 Chenopodium quinoa HOM05D002637 ORTHO05D009046 1.3e-07 60.8 106 33.0
A01p01540 Brassica napus HOM05D002637 ORTHO05D009046 3.0e-07 59.7 81 42.0
BcaNung03659 Brassica carinata HOM05D002637 ORTHO05D009046 3.9e-07 59.3 81 43.2
Sopen01g036190 Solanum pennellii HOM05D002637 ORTHO05D009046 6.7e-07 58.5 133 31.6
Manes.13G115400 Manihot esculenta HOM05D002637 ORTHO05D009046 8.7e-07 58.2 154 27.9
Phvul.008G046000 Phaseolus vulgaris HOM05D002637 ORTHO05D009046 1.5e-06 57.4 99 36.4
Aa31LG6G14300 Aethionema arabicum HOM05D002637 ORTHO05D009046 1.9e-06 57.0 132 30.3
CSS0047370 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D009046 4.3e-06 55.8 76 42.1
Peaxi162Scf00030g00043 Petunia axillaris HOM05D002637 ORTHO05D009046 4.3e-06 55.8 107 32.7
Lj7A545G96 Lonicera japonica HOM05D002637 ORTHO05D009046 9.6e-06 54.7 116 31.9


User provided reference genes

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