Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb230650 Zea mays HOM05D002657 ORTHO05D003059 9.1e-89 330.5 201 100.0
Zm00001eb072330 Zea mays HOM05D002657 ORTHO05D003059 1.8e-81 306.2 195 96.4
Zm00001eb072310 Zea mays HOM05D002657 ORTHO05D003059 4.7e-77 291.6 195 83.1
Zm00001eb429900 Zea mays HOM05D002657 ORTHO05D003059 7.3e-46 188.0 118 86.4
Os02g0439200 Oryza sativa ssp. japonica HOM05D002657 ORTHO05D003059 2.1e-32 143.3 194 43.3
MBI04_g41611_MAGBIO Magnolia biondii HOM05D002657 ORTHO05D003059 2.7e-24 116.3 195 36.9
TWI60G0601 Tripterygium wilfordii HOM05D002657 ORTHO05D003059 3.9e-23 112.5 194 35.6
Prupe.2G328200 Prunus persica HOM05D002657 ORTHO05D003059 2.5e-22 109.8 194 33.5
PGR042G1453 Punica granatum HOM05D002657 ORTHO05D003059 5.6e-22 108.6 194 35.1
Dinv17247 Davidia involucrata HOM05D002657 ORTHO05D003059 9.6e-22 107.8 194 33.5
PSO063G0986 Papaver somniferum HOM05D002657 ORTHO05D003059 1.2e-21 107.5 179 36.3
Ca_27636_v3 Cicer arietinum L. HOM05D002657 ORTHO05D003059 3.6e-21 105.9 194 40.2
Manes.09G128400 Manihot esculenta HOM05D002657 ORTHO05D003059 6.2e-21 105.1 194 34.0
CSS0013936 Camellia sinensis var. sinensis HOM05D002657 ORTHO05D003059 1.1e-20 104.4 184 34.2
Duzib106G0276 Durio zibethinus HOM05D002657 ORTHO05D003059 1.1e-20 104.4 191 35.1
Actinidia34325 Actinidia chinensis HOM05D002657 ORTHO05D003059 4.0e-20 102.4 183 35.0
CDE06G2095 Ceratophyllum demersum HOM05D002657 ORTHO05D003059 4.0e-20 102.4 160 37.5
Duzib177G1021 Durio zibethinus HOM05D002657 ORTHO05D003059 4.0e-20 102.4 191 34.6
Aqoxy3G02354 Aquilegia oxysepala HOM05D002657 ORTHO05D003059 5.3e-20 102.1 174 39.1
COL.COLO4_15190 Corchorus olitorius HOM05D002657 ORTHO05D003059 9.0e-20 101.3 191 35.6
MD01G1237800 Malus domestica HOM05D002657 ORTHO05D003059 9.0e-20 101.3 194 34.0
LjContig00222g0028031 Lotus japonicus HOM05D002657 ORTHO05D003059 2.0e-19 100.1 194 32.5
Lalb_Chr05g0211221 Lupinus albus HOM05D002657 ORTHO05D003059 2.0e-19 100.1 191 34.0
Sc05g0006950 Simmondsia chinensis HOM05D002657 ORTHO05D003059 2.6e-19 99.8 193 36.8
Lj3A885T45 Lonicera japonica HOM05D002657 ORTHO05D003059 7.6e-19 98.2 175 34.9
Nitab4.5_0002998g0040 Nicotiana tabacum HOM05D002657 ORTHO05D003059 1.7e-18 97.1 195 30.8
TWI34G0829 Tripterygium wilfordii HOM05D002657 ORTHO05D003059 2.2e-18 96.7 194 33.5
RcHm_v2.0_Chr1g0384501 Rosa chinensis HOM05D002657 ORTHO05D003059 1.4e-17 94.0 194 32.0
Lalb_Chr16g0376551 Lupinus albus HOM05D002657 ORTHO05D003059 1.9e-17 93.6 191 31.4
Nn1g05150 Nelumbo nucifera HOM05D002657 ORTHO05D003059 1.9e-17 93.6 195 33.8
Ca_24433_v3 Cicer arietinum L. HOM05D002657 ORTHO05D003059 3.2e-17 92.8 194 31.4
unitig_90.g27540 Utricularia gibba HOM05D002657 ORTHO05D003059 4.2e-17 92.4 191 31.4
CiPaw.06G035300 Carya illinoinensis HOM05D002657 ORTHO05D003059 5.4e-17 92.0 194 30.9
FvH4_7g34141 Fragaria vesca HOM05D002657 ORTHO05D003059 2.1e-16 90.1 179 33.0
GSVIVG01024346001 Vitis vinifera HOM05D002657 ORTHO05D003059 2.7e-16 89.7 180 32.8
Migut.F00936 Erythranthe guttata HOM05D002657 ORTHO05D003059 6.0e-16 88.6 194 29.9
Eucgr.A02985 Eucalyptus grandis HOM05D002657 ORTHO05D003059 6.0e-16 88.6 194 35.6
SalBow2G3352 Salvia bowleyana HOM05D002657 ORTHO05D003059 6.0e-16 88.6 192 29.7
AL7G25140 Arabidopsis lyrata HOM05D002657 ORTHO05D003059 1.3e-15 87.4 194 32.5
Atru.chr12.1915 Acer truncatum HOM05D002657 ORTHO05D003059 3.9e-15 85.9 195 30.8
CDE06G2427 Ceratophyllum demersum HOM05D002657 ORTHO05D003059 5.1e-15 85.5 156 33.3
Lalb_Chr09g0320111 Lupinus albus HOM05D002657 ORTHO05D003059 5.1e-15 85.5 176 32.4
CDE12G0025 Ceratophyllum demersum HOM05D002657 ORTHO05D003059 6.6e-15 85.1 186 30.6
Nitab4.5_0000115g0370 Nicotiana tabacum HOM05D002657 ORTHO05D003059 6.6e-15 85.1 195 29.2
Gohir.A11G303100 Gossypium hirsutum HOM05D002657 ORTHO05D003059 1.1e-14 84.3 191 32.5
Gorai.007G348400 Gossypium raimondii HOM05D002657 ORTHO05D003059 1.5e-14 84.0 194 31.4
Glyma.11G009200 Glycine max HOM05D002657 ORTHO05D003059 1.9e-14 83.6 191 30.9
Os04g0592400 Oryza sativa ssp. japonica HOM05D002657 ORTHO05D003059 2.5e-14 83.2 195 35.9
Gohir.D11G318400 Gossypium hirsutum HOM05D002657 ORTHO05D003059 4.3e-14 82.4 194 31.4
Nitab4.5_0000021g0730 Nicotiana tabacum HOM05D002657 ORTHO05D003059 5.6e-14 82.0 128 38.3
Zm00001eb224910 Zea mays HOM05D002657 ORTHO05D003059 7.3e-14 81.6 195 28.7
Migut.F00080 Erythranthe guttata HOM05D002657 ORTHO05D003059 1.3e-13 80.9 191 30.4
Lj3g0004765 Lotus japonicus HOM05D002657 ORTHO05D003059 2.8e-13 79.7 179 31.3
Lalb_Chr19g0140011 Lupinus albus HOM05D002657 ORTHO05D003059 2.8e-13 79.7 149 32.2
MD01G1238300 Malus domestica HOM05D002657 ORTHO05D003059 2.8e-13 79.7 159 32.7
Zm00001eb024910 Zea mays HOM05D002657 ORTHO05D003059 2.8e-13 79.7 187 29.9
Sc17g0005660 Simmondsia chinensis HOM05D002657 ORTHO05D003059 4.8e-13 79.0 141 32.6
Sabra13G0073700 Salix brachista HOM05D002657 ORTHO05D003059 8.1e-13 78.2 149 34.2
CSS0037437 Camellia sinensis var. sinensis HOM05D002657 ORTHO05D003059 1.1e-12 77.8 159 30.2
CSS0045858 Camellia sinensis var. sinensis HOM05D002657 ORTHO05D003059 1.1e-12 77.8 159 30.2
Gohir.A08G221658 Gossypium hirsutum HOM05D002657 ORTHO05D003059 1.8e-12 77.0 128 37.5
Nitab4.5_0004530g0080 Nicotiana tabacum HOM05D002657 ORTHO05D003059 1.8e-12 77.0 124 36.3
arahy.Tifrunner.gnm1.ann1.0CRJ7F Arachis hypogaea HOM05D002657 ORTHO05D003059 2.4e-12 76.6 194 29.4
FAN10G3406 Fragaria x ananassa HOM05D002657 ORTHO05D003059 2.4e-12 76.6 144 33.3
FAN03G3506 Fragaria x ananassa HOM05D002657 ORTHO05D003059 6.9e-12 75.1 144 32.6
SGA_v2.0_scaffold50G18450 Striga asiatica HOM05D002657 ORTHO05D003059 6.9e-12 75.1 194 26.8
VMungo1127G0287 Vigna mungo HOM05D002657 ORTHO05D003059 6.9e-12 75.1 192 28.6
Gohir.D08G241100 Gossypium hirsutum HOM05D002657 ORTHO05D003059 9.0e-12 74.7 124 37.1
Medtr5g007350 Medicago truncatula HOM05D002657 ORTHO05D003059 2.0e-11 73.6 195 26.7
Nn5g29452 Nelumbo nucifera HOM05D002657 ORTHO05D003059 2.0e-11 73.6 101 42.6
Hund21160 Selenicereus undatus HOM05D002657 ORTHO05D003059 2.6e-11 73.2 184 31.0
arahy.Tifrunner.gnm1.ann1.M9YASY Arachis hypogaea HOM05D002657 ORTHO05D003059 5.8e-11 72.0 144 32.6
EL10Ac8g20570 Beta vulgaris HOM05D002657 ORTHO05D003059 5.8e-11 72.0 143 32.9
arahy.Tifrunner.gnm1.ann1.51ZP46 Arachis hypogaea HOM05D002657 ORTHO05D003059 9.9e-11 71.2 194 28.4
CiPaw.05G214700 Carya illinoinensis HOM05D002657 ORTHO05D003059 9.9e-11 71.2 195 27.7
Glyma.11G108500 Glycine max HOM05D002657 ORTHO05D003059 1.3e-10 70.9 191 28.3
Ah.08g218170 Amaranthus hybridus HOM05D002657 ORTHO05D003059 3.8e-10 69.3 190 28.4
Lalb_Chr01g0000851 Lupinus albus HOM05D002657 ORTHO05D003059 3.8e-10 69.3 191 27.2
Thhalv10024236m.g Eutrema salsugineum HOM05D002657 ORTHO05D003059 4.9e-10 68.9 154 31.2
Gorai.004G256500 Gossypium raimondii HOM05D002657 ORTHO05D003059 4.9e-10 68.9 124 35.5
PGSC0003DMG400003163 Solanum tuberosum HOM05D002657 ORTHO05D003059 8.4e-10 68.2 117 35.0
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 1.1e-09 67.8 143 31.5
TPR.G19616 Trifolium pratense HOM05D002657 ORTHO05D003059 1.9e-09 67.0 121 36.4
Psat2g189280 Pisum sativum HOM05D002657 ORTHO05D003059 2.4e-09 66.6 195 26.2
MELO3C021858.2 Cucumis melo HOM05D002657 ORTHO05D003059 4.2e-09 65.9 115 35.7
Os10g0577100 Oryza sativa ssp. japonica HOM05D002657 ORTHO05D003059 4.2e-09 65.9 160 26.9
Peaxi162Scf00815g00358 Petunia axillaris HOM05D002657 ORTHO05D003059 4.2e-09 65.9 110 32.7
PSO782G1876 Papaver somniferum HOM05D002657 ORTHO05D003059 5.4e-09 65.5 179 27.4
SalBow4G0313 Salvia bowleyana HOM05D002657 ORTHO05D003059 5.4e-09 65.5 145 28.3
SalBow4G0550 Salvia bowleyana HOM05D002657 ORTHO05D003059 5.4e-09 65.5 145 28.3
BcaB03g12538 Brassica carinata HOM05D002657 ORTHO05D003059 7.1e-09 65.1 159 30.8
Actinidia08759 Actinidia chinensis HOM05D002657 ORTHO05D003059 1.2e-08 64.3 129 32.6
Cc01_g00970 Coffea canephora HOM05D002657 ORTHO05D003059 2.1e-08 63.5 116 33.6
A10p22490 Brassica napus HOM05D002657 ORTHO05D003059 2.7e-08 63.2 195 29.2
HanXRQChr16g0512141 Helianthus annuus HOM05D002657 ORTHO05D003059 2.7e-08 63.2 193 26.9
Sed0014338 Sechium edule HOM05D002657 ORTHO05D003059 2.7e-08 63.2 103 37.9
AT4G27595 Arabidopsis thaliana HOM05D002657 ORTHO05D003059 3.5e-08 62.8 159 29.6
BolC9t58867H Brassica oleracea HOM05D002657 ORTHO05D003059 3.5e-08 62.8 195 28.2
Gohir.A02G127400 Gossypium hirsutum HOM05D002657 ORTHO05D003059 3.5e-08 62.8 114 34.2
BcaNung03548 Brassica carinata HOM05D002657 ORTHO05D003059 7.9e-08 61.6 160 30.0
BolC1t05862H Brassica oleracea HOM05D002657 ORTHO05D003059 7.9e-08 61.6 160 30.0
Manes.08G064501 Manihot esculenta HOM05D002657 ORTHO05D003059 7.9e-08 61.6 92 37.0
THA.LOC109117075 Tarenaya hassleriana HOM05D002657 ORTHO05D012605 7.9e-08 61.6 134 30.6
CSS0006811 Camellia sinensis var. sinensis HOM05D002657 ORTHO05D003059 1.0e-07 61.2 92 37.0
Oeu027888.1 Olea europaea HOM05D002657 ORTHO05D003059 1.3e-07 60.8 92 38.0
CsaV3_2G036640 Cucumis sativus L. HOM05D002657 ORTHO05D003059 1.8e-07 60.5 97 37.1
BraA10t44308Z Brassica rapa HOM05D002657 ORTHO05D003059 3.9e-07 59.3 195 27.2
Cfa016065 Carpinus fangiana HOM05D002657 ORTHO05D003059 6.7e-07 58.5 116 31.0
TPR.G38027 Trifolium pratense HOM05D002657 ORTHO05D003059 6.7e-07 58.5 140 27.9
VMungo1215G0687 Vigna mungo HOM05D002657 ORTHO05D003059 6.7e-07 58.5 123 31.7
CARHR076960 Cardamine hirsuta HOM05D002657 ORTHO05D003059 1.1e-06 57.8 174 29.3
Sabra19G0059600 Salix brachista HOM05D002657 ORTHO05D003059 1.1e-06 57.8 91 35.2
Thecc.05G219100 Theobroma cacao HOM05D002657 ORTHO05D003059 3.3e-06 56.2 87 40.2
CAN.G65.127 Capsicum annuum HOM05D002657 ORTHO05D003059 4.3e-06 55.8 100 32.0
Potri.019G047600 Populus trichocarpa HOM05D002657 ORTHO05D003059 4.3e-06 55.8 91 35.2
QL09p021240 Quercus lobata HOM05D002657 ORTHO05D003059 4.3e-06 55.8 110 30.9
vmacro06532 Vaccinium macrocarpon HOM05D002657 ORTHO05D003059 5.6e-06 55.5 92 32.6
Actinidia28411 Actinidia chinensis HOM05D002657 ORTHO05D003059 7.4e-06 55.1 183 25.7
Ciclev10030659m.g Citrus clementina HOM05D002657 ORTHO05D003059 7.4e-06 55.1 92 33.7
Aa31LG2G2210 Aethionema arabicum HOM05D002657 ORTHO05D003059 9.6e-06 54.7 194 24.2
CAN.G1131.29 Capsicum annuum HOM05D002657 ORTHO05D003059 9.6e-06 54.7 105 31.4
Potri.013G079000 Populus trichocarpa HOM05D002657 ORTHO05D003059 9.6e-06 54.7 89 34.8


User provided reference genes

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