Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb230250 Zea mays HOM05D006294 ORTHO05D007668 1.2e-251 872.8 485 100.0
Os02g0120000 Oryza sativa ssp. japonica HOM05D006294 ORTHO05D007668 5.6e-177 624.8 451 73.2
Hma1.2p1_0032F.1_g019100 Hydrangea macrophylla HOM05D006294 ORTHO05D007668 4.5e-57 226.5 410 36.3
CiPaw.06G119700 Carya illinoinensis HOM05D006294 ORTHO05D007668 2.9e-56 223.8 418 36.1
Ciclev10028424m.g Citrus clementina HOM05D006294 ORTHO05D007668 4.2e-55 219.9 423 34.5
PSO541G2965 Papaver somniferum HOM05D006294 ORTHO05D007668 5.4e-55 219.5 433 34.9
COL.COLO4_18015 Corchorus olitorius HOM05D006294 ORTHO05D007668 1.6e-54 218.0 424 34.7
arahy.Tifrunner.gnm1.ann1.DS4D2V Arachis hypogaea HOM05D006294 ORTHO05D007668 2.1e-54 217.6 421 34.9
ATR0661G309 Amborella trichopoda HOM05D006294 ORTHO05D007668 4.6e-54 216.5 417 34.1
Lalb_Chr06g0163771 Lupinus albus HOM05D006294 ORTHO05D007668 4.6e-54 216.5 418 34.2
CSS0011609 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 7.9e-54 215.7 423 35.0
CSS0032021 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 7.9e-54 215.7 423 35.0
Haze_02090 Corylus avellana HOM05D006294 ORTHO05D007668 1.3e-53 214.9 427 34.9
Lj5A175T99 Lonicera japonica HOM05D006294 ORTHO05D007668 2.3e-53 214.2 424 35.6
arahy.Tifrunner.gnm1.ann1.DZVX1N Arachis hypogaea HOM05D006294 ORTHO05D007668 3.0e-53 213.8 421 34.4
Dinv41907 Davidia involucrata HOM05D006294 ORTHO05D007668 3.9e-53 213.4 422 35.1
MBI05_g12855_MAGBIO Magnolia biondii HOM05D006294 ORTHO05D007668 6.7e-53 212.6 411 35.5
Gorai.005G255600 Gossypium raimondii HOM05D006294 ORTHO05D007668 8.7e-53 212.2 426 33.8
Thecc.02G053600 Theobroma cacao HOM05D006294 ORTHO05D007668 8.7e-53 212.2 431 34.1
MD10G1129400 Malus domestica HOM05D006294 ORTHO05D007668 1.1e-52 211.8 407 34.4
Gohir.D02G227800 Gossypium hirsutum HOM05D006294 ORTHO05D007668 1.9e-52 211.1 426 33.8
Potri.009G139300 Populus trichocarpa HOM05D006294 ORTHO05D007668 2.5e-52 210.7 414 34.5
Cc09_g10390 Coffea canephora HOM05D006294 ORTHO05D007668 4.3e-52 209.9 423 35.7
Duzib052G0076 Durio zibethinus HOM05D006294 ORTHO05D007668 4.3e-52 209.9 407 36.1
QL11p052544 Quercus lobata HOM05D006294 ORTHO05D007668 4.3e-52 209.9 432 34.5
CANSAT25G0635 Cannabis sativa HOM05D006294 ORTHO05D007668 5.6e-52 209.5 411 33.1
Prupe.8G170200 Prunus persica HOM05D006294 ORTHO05D007668 5.6e-52 209.5 408 35.0
Actinidia18031 Actinidia chinensis HOM05D006294 ORTHO05D007668 2.8e-51 207.2 427 33.3
BcaB08g34688 Brassica carinata HOM05D006294 ORTHO05D007668 2.8e-51 207.2 427 33.7
TWI79G1609 Tripterygium wilfordii HOM05D006294 ORTHO05D007668 3.7e-51 206.8 423 33.6
Thhalv10022675m.g Eutrema salsugineum HOM05D006294 ORTHO05D007668 4.8e-51 206.5 422 33.6
FvH4_2g15760 Fragaria vesca HOM05D006294 ORTHO05D007668 6.2e-51 206.1 403 34.0
FAN24G2955 Fragaria x ananassa HOM05D006294 ORTHO05D007668 6.2e-51 206.1 403 33.7
RcHm_v2.0_Chr6g0279111 Rosa chinensis HOM05D006294 ORTHO05D007668 6.2e-51 206.1 403 34.5
SalBow1G5734 Salvia bowleyana HOM05D006294 ORTHO05D007668 6.2e-51 206.1 420 35.2
Glyma.20G105600 Glycine max HOM05D006294 ORTHO05D007668 8.1e-51 205.7 422 35.3
PGR142G2258 Punica granatum HOM05D006294 ORTHO05D007668 1.4e-50 204.9 408 34.6
MELO3C022147.2 Cucumis melo HOM05D006294 ORTHO05D007668 1.8e-50 204.5 436 33.5
Manes.04G070000 Manihot esculenta HOM05D006294 ORTHO05D007668 1.8e-50 204.5 419 32.7
Phvul.007G017200 Phaseolus vulgaris HOM05D006294 ORTHO05D007668 3.1e-50 203.8 424 35.1
Sed0001766 Sechium edule HOM05D006294 ORTHO05D007668 3.1e-50 203.8 426 32.6
A03p46230 Brassica napus HOM05D006294 ORTHO05D007668 4.0e-50 203.4 426 32.9
BraA03t13747Z Brassica rapa HOM05D006294 ORTHO05D007668 4.0e-50 203.4 426 32.9
Rhsim11G0194300 Rhododendron simsii HOM05D006294 ORTHO05D007668 4.0e-50 203.4 437 33.2
VMungo0720G0114 Vigna mungo HOM05D006294 ORTHO05D007668 4.0e-50 203.4 426 34.5
FAN27G0563 Fragaria x ananassa HOM05D006294 ORTHO05D007668 5.3e-50 203.0 403 34.2
FAN15G3675 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.2e-49 201.8 403 34.0
C03p57830 Brassica napus HOM05D006294 ORTHO05D007668 2.0e-49 201.1 425 32.7
BolC3t18054H Brassica oleracea HOM05D006294 ORTHO05D007668 2.0e-49 201.1 425 32.7
Nn5g30865 Nelumbo nucifera HOM05D006294 ORTHO05D007668 2.0e-49 201.1 410 33.4
Aa31LG8G14230 Aethionema arabicum HOM05D006294 ORTHO05D007668 3.4e-49 200.3 417 33.6
Sp3g30330 Schrenkiella parvula HOM05D006294 ORTHO05D007668 5.8e-49 199.5 426 32.9
AT2G17033 Arabidopsis thaliana HOM05D006294 ORTHO05D007668 1.3e-48 198.4 422 33.6
vmacro02296 Vaccinium macrocarpon HOM05D006294 ORTHO05D007668 1.3e-48 198.4 427 31.6
Lsat_1_v5_gn_4_70040 Lactuca sativa HOM05D006294 ORTHO05D007668 6.4e-48 196.1 420 32.1
HanXRQChr10g0300361 Helianthus annuus HOM05D006294 ORTHO05D007668 2.5e-47 194.1 424 31.8
TPR.G2441 Trifolium pratense HOM05D006294 ORTHO05D007668 3.2e-47 193.7 434 31.6
Carub.0003s3096 Capsella rubella HOM05D006294 ORTHO05D007668 4.2e-47 193.4 423 32.9
AL3G49850 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 5.5e-47 193.0 422 32.5
TPR.G2447 Trifolium pratense HOM05D006294 ORTHO05D007668 7.1e-47 192.6 432 31.0
Lj5g0013499 Lotus japonicus HOM05D006294 ORTHO05D007668 9.3e-47 192.2 426 31.5
ECA234G3875 Erigeron canadensis HOM05D006294 ORTHO05D007668 1.6e-46 191.4 425 31.5
Ah.11g046440 Amaranthus hybridus HOM05D006294 ORTHO05D007668 2.1e-46 191.0 416 31.0
Aqoxy6G01907 Aquilegia oxysepala HOM05D006294 ORTHO05D007668 3.5e-46 190.3 421 32.8
CsaV3_5G039720 Cucumis sativus L. HOM05D006294 ORTHO05D007668 1.8e-45 188.0 425 32.2
Cfa005297 Carpinus fangiana HOM05D006294 ORTHO05D007668 5.1e-45 186.4 426 33.8
ClCG02G011140 Citrullus lanatus HOM05D006294 ORTHO05D007668 1.9e-44 184.5 432 31.5
Migut.B00046 Erythranthe guttata HOM05D006294 ORTHO05D007668 3.3e-44 183.7 422 31.3
Eucgr.I01461 Eucalyptus grandis HOM05D006294 ORTHO05D007668 2.1e-43 181.0 423 33.3
Atru.BG.70.p Acer truncatum HOM05D006294 ORTHO05D007668 1.1e-42 178.7 363 35.0
Oeu045089.1 Olea europaea HOM05D006294 ORTHO05D007668 3.1e-42 177.2 434 31.6
unitig_21.g20844 Utricularia gibba HOM05D006294 ORTHO05D007668 3.1e-42 177.2 409 30.3
FAN20G2719 Fragaria x ananassa HOM05D006294 ORTHO05D007668 9.0e-42 175.6 364 32.4
PSO675G2411 Papaver somniferum HOM05D006294 ORTHO05D007668 5.8e-41 172.9 427 32.3
CARHR107360 Cardamine hirsuta HOM05D006294 ORTHO05D007668 7.6e-41 172.6 422 30.8
CDE05G1346 Ceratophyllum demersum HOM05D006294 ORTHO05D007668 4.9e-40 169.9 413 30.3
THA.LOC104819661 Tarenaya hassleriana HOM05D006294 ORTHO05D007668 6.5e-40 169.5 422 30.1
Nitab4.5_0028029g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 3.2e-39 167.2 398 31.2
Rhsim11G0078500 Rhododendron simsii HOM05D006294 ORTHO05D007668 9.3e-39 165.6 415 29.6
Medtr1g113720 Medicago truncatula HOM05D006294 ORTHO05D007668 3.5e-38 163.7 430 29.1
Sc14g0000720 Simmondsia chinensis HOM05D006294 ORTHO05D007668 1.0e-37 162.2 259 38.6
GSVIVG01023965001 Vitis vinifera HOM05D006294 ORTHO05D007668 1.8e-37 161.4 406 30.3
BcaC01g02964 Brassica carinata HOM05D006294 ORTHO05D007668 2.5e-36 157.5 361 32.4
Ca_03291_v3 Cicer arietinum L. HOM05D006294 ORTHO05D007668 4.3e-36 156.8 331 34.1
Cpa.g.sc20.124 Carica papaya HOM05D006294 ORTHO05D007668 1.6e-35 154.8 422 30.1
Sabra09G0107900 Salix brachista HOM05D006294 ORTHO05D007668 6.9e-34 149.4 412 28.9
Sopen00g003210 Solanum pennellii HOM05D006294 ORTHO05D007668 3.4e-33 147.1 409 28.9
Solyc10g055700.2 Solanum lycopersicum HOM05D006294 ORTHO05D007668 4.5e-33 146.7 409 28.9
Gohir.A03G206400 Gossypium hirsutum HOM05D006294 ORTHO05D007668 7.7e-33 146.0 219 38.8
MSTRG.19967 Avicennia marina HOM05D006294 ORTHO05D007668 2.9e-32 144.1 403 29.3
PGSC0003DMG400018933 Solanum tuberosum HOM05D006294 ORTHO05D007668 2.9e-32 144.1 409 28.6
CAN.G1.72 Capsicum annuum HOM05D006294 ORTHO05D007668 4.2e-31 140.2 423 29.3
Nitab4.5_0016084g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 2.1e-30 137.9 398 28.9
Peaxi162Scf00042g01217 Petunia axillaris HOM05D006294 ORTHO05D007668 2.1e-30 137.9 419 28.6
HPP92_004929 Vanilla planifolia HOM05D006294 ORTHO05D007668 3.9e-29 133.7 186 39.8
Nn6g32171 Nelumbo nucifera HOM05D006294 ORTHO05D007668 8.2e-27 125.9 219 36.1
Mapoly0035s0104 Marchantia polymorpha HOM05D006294 ORTHO05D007668 1.2e-25 122.1 418 27.5
SGA_v2.0_scaffold32G13314 Striga asiatica HOM05D006294 ORTHO05D007668 5.9e-25 119.8 422 26.8
HPP92_004930 Vanilla planifolia HOM05D006294 ORTHO05D007668 2.2e-24 117.9 180 34.4
AL3G49870 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 2.9e-24 117.5 229 34.5
Lsat_1_v5_gn_6_58781 Lactuca sativa HOM05D006294 ORTHO05D007668 1.4e-23 115.2 281 28.1
Nn1g05690 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.8e-21 108.2 197 34.0
Pp3c16_9880 Physcomitrium patens HOM05D006294 ORTHO05D007668 5.1e-21 106.7 418 25.4
Carub.0135s0001 Capsella rubella HOM05D006294 ORTHO05D007668 4.4e-20 103.6 299 28.8
HPP92_004921 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.4e-13 82.0 118 37.3
Nn3g21918 Nelumbo nucifera HOM05D006294 ORTHO05D007668 2.9e-08 64.3 182 26.4
Zm00001eb138620 Zea mays HOM05D062365 ORTHO05D444824 5.0e-08 63.5 45 73.3
Zm00001eb320230 Zea mays HOM05D062365 ORTHO05D445346 5.0e-08 63.5 46 71.7
CBR_g9159 Chara braunii HOM05D004127 ORTHO05D005119 3.2e-07 60.8 108 35.2
SMO365G0082 Selaginella moellendorffii HOM05D004127 ORTHO05D005119 9.4e-07 59.3 110 35.5
THA.LOC104819204 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 1.2e-06 58.9 119 32.8
RcHm_v2.0_Chr3g0487361 Rosa chinensis HOM05D004127 ORTHO05D005119 2.1e-06 58.2 118 30.5
Nn3g21732 Nelumbo nucifera HOM05D004127 ORTHO05D005119 2.7e-06 57.8 99 34.3
ECA247G3842 Erigeron canadensis HOM05D004127 ORTHO05D005119 4.7e-06 57.0 124 29.0
Sabra14G0088000 Salix brachista HOM05D004127 ORTHO05D005119 4.7e-06 57.0 97 36.1
Potri.002G193900 Populus trichocarpa HOM05D004127 ORTHO05D005119 8.0e-06 56.2 97 36.1


User provided reference genes

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