Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 0.0e+00 1104.4 550 100.0
Zm00001eb229670 Zea mays HOM05D005919 ORTHO05D007176 2.3e-243 845.5 438 96.6
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 2.0e-231 805.8 533 76.0
GSVIVG01023723001 Vitis vinifera HOM05D005919 ORTHO05D007176 6.6e-190 667.9 514 63.4
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 3.6e-188 662.1 536 61.9
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 6.1e-188 661.4 514 63.4
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 6.1e-188 661.4 509 64.0
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 1.8e-187 659.8 513 62.2
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 5.2e-187 658.3 515 62.7
MD16G1262500 Malus domestica HOM05D005919 ORTHO05D007176 1.2e-186 657.1 544 60.8
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 1.5e-186 656.8 512 63.3
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 1.5e-186 656.8 516 62.8
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 2.0e-186 656.4 514 62.5
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 2.0e-186 656.4 518 61.8
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 9.8e-186 654.1 512 62.1
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 9.8e-186 654.1 513 63.0
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 1.7e-185 653.3 550 59.5
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 2.9e-185 652.5 513 62.2
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 3.7e-185 652.1 551 59.9
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 4.9e-185 651.7 552 59.8
Sc02g0003990 Simmondsia chinensis HOM05D005919 ORTHO05D007176 4.9e-185 651.7 509 64.0
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 5.4e-184 648.3 513 60.0
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 5.4e-184 648.3 535 60.9
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 5.4e-184 648.3 513 61.4
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 9.2e-184 647.5 513 62.6
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 1.6e-183 646.7 515 61.4
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.7e-183 646.0 552 58.7
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 6.0e-183 644.8 518 62.0
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 7.8e-183 644.4 552 58.9
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 7.8e-183 644.4 507 61.1
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 1.0e-182 644.0 511 61.3
Solyc07g006330.2 Solanum lycopersicum HOM05D005919 ORTHO05D007176 5.0e-182 641.7 510 61.6
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 6.6e-182 641.3 525 61.3
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 6.6e-182 641.3 511 62.2
Thecc.09G160900 Theobroma cacao HOM05D005919 ORTHO05D007176 8.6e-182 641.0 513 61.2
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 1.5e-181 640.2 510 61.2
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.9e-181 639.8 559 58.3
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 3.3e-181 639.0 509 62.1
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 4.3e-181 638.6 510 62.0
Migut.K00275 Erythranthe guttata HOM05D005919 ORTHO05D007176 4.3e-181 638.6 516 60.1
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 7.3e-181 637.9 512 60.9
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 9.5e-181 637.5 548 58.6
Potri.018G098700 Populus trichocarpa HOM05D005919 ORTHO05D007176 9.5e-181 637.5 554 58.5
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 2.1e-180 636.3 510 60.4
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 3.6e-180 635.6 551 58.1
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 3.6e-180 635.6 510 61.4
Gohir.A06G079400 Gossypium hirsutum HOM05D005919 ORTHO05D007176 4.7e-180 635.2 505 63.0
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 6.2e-180 634.8 520 59.6
Lj4g0016840 Lotus japonicus HOM05D005919 ORTHO05D007176 8.0e-180 634.4 528 58.5
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 4.0e-179 632.1 513 59.6
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 5.2e-179 631.7 512 60.2
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 6.8e-179 631.3 519 59.3
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 6.8e-179 631.3 511 61.4
Duzib150G0612 Durio zibethinus HOM05D005919 ORTHO05D007176 6.8e-179 631.3 513 61.0
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 1.5e-178 630.2 548 58.2
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 2.0e-178 629.8 520 60.6
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 4.4e-178 628.6 512 60.0
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 7.5e-178 627.9 555 57.7
Gorai.010G092100 Gossypium raimondii HOM05D005919 ORTHO05D007176 7.5e-178 627.9 523 61.0
Nitab4.5_0005985g0040 Nicotiana tabacum HOM05D005919 ORTHO05D007176 7.5e-178 627.9 524 59.0
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 9.8e-178 627.5 555 58.7
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 9.8e-178 627.5 525 61.3
Nitab4.5_0005551g0020 Nicotiana tabacum HOM05D005919 ORTHO05D007176 9.8e-178 627.5 522 60.0
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 1.3e-177 627.1 540 59.3
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 1.3e-177 627.1 516 59.3
Medtr4g129500 Medicago truncatula HOM05D005919 ORTHO05D007176 1.7e-177 626.7 518 58.5
Psat4g048080 Pisum sativum HOM05D005919 ORTHO05D007176 1.7e-177 626.7 517 60.0
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 2.2e-177 626.3 572 58.0
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 2.9e-177 625.9 561 58.6
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 3.7e-177 625.5 512 59.6
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 4.9e-177 625.2 545 58.9
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 8.3e-177 624.4 523 60.2
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 1.4e-176 623.6 556 57.2
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 2.7e-175 619.4 512 59.2
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 2.7e-175 619.4 521 58.0
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 3.0e-174 615.9 512 60.0
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 5.0e-174 615.1 497 60.4
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 8.6e-174 614.4 479 63.3
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.5e-173 613.6 512 60.4
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 4.3e-173 612.1 499 59.3
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 4.7e-172 608.6 512 59.0
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 7.5e-170 601.3 526 58.4
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 3.5e-167 592.4 515 58.8
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 1.1e-165 587.4 537 57.2
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 3.6e-164 582.4 534 56.6
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 8.9e-163 577.8 471 58.6
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 1.2e-162 577.4 435 64.8
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 3.4e-162 575.9 518 56.4
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 8.4e-161 571.2 531 54.4
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 4.1e-160 568.9 483 59.6
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 1.3e-150 537.3 582 47.9
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 1.3e-150 537.3 582 47.9
Hund26692 Selenicereus undatus HOM05D005919 ORTHO05D007176 6.6e-150 535.0 582 50.0
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 4.8e-148 528.9 508 53.3
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 2.4e-147 526.6 430 61.9
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 6.9e-147 525.0 437 59.7
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 9.9e-146 521.2 487 54.4
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 4.0e-139 499.2 427 58.5
Hma1.2p1_1531F.1_g289236 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 1.6e-132 477.2 425 58.4
CDE02G0068 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 3.7e-132 476.1 384 61.2
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 4.0e-131 472.6 402 57.7
Sopen07g002420 Solanum pennellii HOM05D005919 ORTHO05D007176 2.1e-127 460.3 388 59.5
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 3.9e-126 456.1 394 60.9
CiPaw.07G186600 Carya illinoinensis HOM05D005919 ORTHO05D007176 3.1e-123 446.4 387 58.4
Dinv42785 Davidia involucrata HOM05D005919 ORTHO05D007176 1.4e-118 431.0 319 64.6
SGA_v2.0_scaffold87G27166 Striga asiatica HOM05D005919 ORTHO05D007176 6.9e-115 418.7 496 47.2
Gohir.D06G079000 Gossypium hirsutum HOM05D005919 ORTHO05D007176 1.6e-111 407.5 513 45.0
vmacro13072 Vaccinium macrocarpon HOM05D005919 ORTHO05D007176 2.6e-106 390.2 502 46.0
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.0e-102 378.3 487 45.0
MD13G1260800 Malus domestica HOM05D005919 ORTHO05D007176 4.1e-99 366.3 440 46.8
COL.COLO4_04535 Corchorus olitorius HOM05D005919 ORTHO05D007176 2.2e-97 360.5 286 61.9
MCO09G503 Micromonas commoda HOM05D005919 ORTHO05D007176 1.0e-86 325.1 469 40.7
arahy.Tifrunner.gnm1.ann1.IETZ0A Arachis hypogaea HOM05D005919 ORTHO05D007176 1.3e-68 265.0 212 62.3
arahy.Tifrunner.gnm1.ann1.I3IQB6 Arachis hypogaea HOM05D005919 ORTHO05D007176 8.9e-62 242.3 243 49.4
Glyma.17G068567 Glycine max HOM05D005919 ORTHO05D007176 3.0e-49 200.7 189 54.0
Zm00001eb050560 Zea mays HOM05D005919 ORTHO05D007176 4.3e-48 196.8 100 94.0
Zm00001eb260780 Zea mays HOM05D005919 ORTHO05D007176 4.3e-48 196.8 100 94.0
Zm00001eb302550 Zea mays HOM05D005919 ORTHO05D007176 4.3e-48 196.8 100 94.0
arahy.Tifrunner.gnm1.ann1.8I3VMK Arachis hypogaea HOM05D005919 ORTHO05D007176 4.9e-44 183.3 198 47.0
PRCOL_00000120 Prasinoderma coloniale HOM05D000722 ORTHO05D007176 8.4e-44 182.6 505 30.3
AUR62026693 Chenopodium quinoa HOM05D005919 ORTHO05D007176 1.1e-43 182.2 123 67.5
Glyma.17G068633 Glycine max HOM05D005919 ORTHO05D007176 2.1e-42 177.9 192 51.6
Sabra18G0085400 Salix brachista HOM05D005919 ORTHO05D007176 1.3e-41 175.3 142 57.7
Actinidia20955 Actinidia chinensis HOM05D005919 ORTHO05D007176 1.7e-41 174.9 122 64.8
Psat4g010400 Pisum sativum HOM05D005919 ORTHO05D007176 3.3e-40 170.6 108 71.3
CDE02G3325 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 1.1e-38 165.6 122 60.7
GSVIVG01023746001 Vitis vinifera HOM05D005919 ORTHO05D007176 3.7e-23 114.0 90 60.0
Rhsim01G0011300 Rhododendron simsii HOM05D005919 ORTHO05D007176 2.2e-20 104.8 75 60.0
DCAR_017944 Daucus carota HOM05D005919 ORTHO05D007176 7.9e-18 96.3 144 40.3
Actinidia15384 Actinidia chinensis HOM05D005919 ORTHO05D007176 8.2e-15 86.3 86 53.5
AL1G16380 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 1.1e-14 85.9 74 59.5
SMO145G0125 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 6.9e-14 83.2 341 27.3
arahy.Tifrunner.gnm1.ann1.Z1JPC4 Arachis hypogaea HOM05D005597 ORTHO05D007304 4.3e-08 63.9 465 24.1
Glyma.13G270500 Glycine max HOM05D005597 ORTHO05D007304 4.3e-08 63.9 431 24.6
Psat4g048040 Pisum sativum HOM05D005919 ORTHO05D007176 4.3e-08 63.9 42 64.3
Glyma.12G229300 Glycine max HOM05D005597 ORTHO05D007304 1.6e-07 62.0 431 24.6
arahy.Tifrunner.gnm1.ann1.06PSEJ Arachis hypogaea HOM05D005597 ORTHO05D007304 3.7e-07 60.8 465 23.9
VMungo1080G1355 Vigna mungo HOM05D005597 ORTHO05D007304 3.1e-06 57.8 461 23.9
TWI39G1070 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 4.1e-06 57.4 313 23.6
Eucgr.F01228 Eucalyptus grandis HOM05D005597 ORTHO05D007304 5.3e-06 57.0 428 23.6
Cfa019573 Carpinus fangiana HOM05D005597 ORTHO05D007304 6.9e-06 56.6 432 23.6
Phvul.005G066500 Phaseolus vulgaris HOM05D005597 ORTHO05D007304 9.0e-06 56.2 461 24.1


User provided reference genes

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