Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb229670 Zea mays HOM05D005919 ORTHO05D007176 9.7e-253 876.3 438 100.0
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 1.1e-243 846.3 438 96.6
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 2.8e-191 672.2 411 80.0
GSVIVG01023723001 Vitis vinifera HOM05D005919 ORTHO05D007176 5.8e-157 558.1 441 61.9
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 1.4e-155 553.5 441 61.5
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 1.4e-155 553.5 440 63.0
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 1.9e-155 553.1 435 63.4
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 2.5e-155 552.7 439 61.0
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 7.1e-155 551.2 441 61.7
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 1.2e-154 550.4 438 62.6
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 3.5e-154 548.9 442 61.3
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 7.9e-154 547.7 443 61.6
Sc02g0003990 Simmondsia chinensis HOM05D005919 ORTHO05D007176 7.9e-154 547.7 439 62.9
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 1.3e-153 547.0 439 59.2
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.8e-153 546.6 439 61.0
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 1.8e-153 546.6 440 61.6
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 2.3e-153 546.2 441 60.3
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 3.0e-153 545.8 439 61.3
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 6.7e-153 544.7 440 61.4
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 1.9e-152 543.1 442 60.4
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 3.3e-152 542.3 439 60.4
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 4.3e-152 542.0 439 59.9
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 9.6e-152 540.8 439 58.5
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 1.3e-151 540.4 439 60.1
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 2.1e-151 539.7 439 61.0
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 6.2e-151 538.1 440 60.2
Thecc.09G160900 Theobroma cacao HOM05D005919 ORTHO05D007176 8.2e-151 537.7 439 60.6
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 1.4e-150 537.0 439 60.8
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 3.1e-150 535.8 441 59.4
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 3.1e-150 535.8 446 59.4
MD16G1262500 Malus domestica HOM05D005919 ORTHO05D007176 3.1e-150 535.8 431 61.0
Solyc07g006330.2 Solanum lycopersicum HOM05D005919 ORTHO05D007176 3.1e-150 535.8 439 60.4
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 4.0e-150 535.4 439 60.4
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 5.3e-150 535.0 433 61.4
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 6.9e-150 534.6 439 59.9
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 1.2e-149 533.9 440 59.5
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 1.2e-149 533.9 430 61.9
Gohir.A06G079400 Gossypium hirsutum HOM05D005919 ORTHO05D007176 1.5e-149 533.5 440 61.6
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 1.5e-149 533.5 439 61.0
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.0e-149 533.1 446 59.4
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 2.0e-149 533.1 438 59.1
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 4.5e-149 531.9 439 59.5
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 7.6e-149 531.2 444 60.4
Migut.K00275 Erythranthe guttata HOM05D005919 ORTHO05D007176 1.0e-148 530.8 444 58.8
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 1.7e-148 530.0 433 59.8
Lj4g0016840 Lotus japonicus HOM05D005919 ORTHO05D007176 3.8e-148 528.9 438 58.2
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 4.9e-148 528.5 443 60.3
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 4.9e-148 528.5 438 59.8
Potri.018G098700 Populus trichocarpa HOM05D005919 ORTHO05D007176 8.4e-148 527.7 439 60.8
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 1.1e-147 527.3 439 59.5
Gorai.010G092100 Gossypium raimondii HOM05D005919 ORTHO05D007176 1.1e-147 527.3 452 60.0
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 1.4e-147 526.9 438 59.1
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 2.5e-147 526.2 439 59.2
Duzib150G0612 Durio zibethinus HOM05D005919 ORTHO05D007176 2.5e-147 526.2 439 59.9
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 3.2e-147 525.8 443 60.3
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 4.2e-147 525.4 448 60.7
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 1.2e-146 523.9 439 59.2
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 1.6e-146 523.5 443 59.1
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 2.1e-146 523.1 444 58.3
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.5e-146 522.3 438 58.9
Medtr4g129500 Medicago truncatula HOM05D005919 ORTHO05D007176 4.6e-146 521.9 444 57.2
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 7.9e-146 521.2 450 59.3
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 7.9e-146 521.2 438 58.2
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 1.0e-145 520.8 438 58.7
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 1.3e-145 520.4 454 59.7
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 1.8e-145 520.0 454 59.5
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 1.8e-145 520.0 444 59.0
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 2.3e-145 519.6 442 57.2
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.0e-145 519.2 438 58.7
Nitab4.5_0005985g0040 Nicotiana tabacum HOM05D005919 ORTHO05D007176 3.0e-145 519.2 453 57.2
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 3.9e-145 518.8 445 59.1
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 3.9e-145 518.8 445 59.6
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 8.7e-145 517.7 438 57.3
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 1.1e-144 517.3 438 58.4
Nitab4.5_0005551g0020 Nicotiana tabacum HOM05D005919 ORTHO05D007176 1.9e-144 516.5 435 58.9
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 1.9e-144 516.5 439 58.8
Psat4g048080 Pisum sativum HOM05D005919 ORTHO05D007176 4.3e-144 515.4 441 58.0
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 5.7e-144 515.0 439 57.4
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 5.7e-144 515.0 440 57.3
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 2.8e-143 512.7 438 59.1
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 4.1e-142 508.8 438 57.1
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 5.3e-142 508.4 438 59.4
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 9.0e-142 507.7 427 59.3
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 5.9e-141 505.0 403 62.8
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 7.2e-139 498.0 414 59.7
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 6.1e-138 495.0 417 59.2
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 2.0e-136 490.0 423 59.6
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 5.7e-136 488.4 420 59.5
Hma1.2p1_1531F.1_g289236 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 3.7e-135 485.7 423 58.9
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 1.5e-133 480.3 404 58.2
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 1.7e-132 476.9 431 56.4
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 4.2e-131 472.2 418 58.1
Sopen07g002420 Solanum pennellii HOM05D005919 ORTHO05D007176 6.1e-130 468.4 388 60.3
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 1.0e-129 467.6 361 63.7
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 1.8e-129 466.8 394 61.9
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 2.3e-129 466.5 461 51.2
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 5.1e-129 465.3 425 56.5
CiPaw.07G186600 Carya illinoinensis HOM05D005919 ORTHO05D007176 1.3e-127 460.7 389 59.1
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 1.1e-118 431.0 464 47.6
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 1.1e-118 431.0 464 47.6
Hund26692 Selenicereus undatus HOM05D005919 ORTHO05D007176 1.1e-118 431.0 507 47.9
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 5.9e-117 425.2 437 51.3
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 2.3e-113 413.3 410 52.4
CDE02G0068 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 1.3e-100 370.9 310 58.7
MD13G1260800 Malus domestica HOM05D005919 ORTHO05D007176 1.1e-99 367.9 440 47.0
COL.COLO4_04535 Corchorus olitorius HOM05D005919 ORTHO05D007176 5.5e-99 365.5 282 63.8
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 7.5e-88 328.6 458 42.4
Dinv42785 Davidia involucrata HOM05D005919 ORTHO05D007176 3.5e-85 319.7 245 62.9
SGA_v2.0_scaffold87G27166 Striga asiatica HOM05D005919 ORTHO05D007176 7.8e-85 318.5 437 44.6
Gohir.D06G079000 Gossypium hirsutum HOM05D005919 ORTHO05D007176 4.4e-80 302.8 245 60.4
vmacro13072 Vaccinium macrocarpon HOM05D005919 ORTHO05D007176 1.2e-72 278.1 436 41.5
arahy.Tifrunner.gnm1.ann1.I3IQB6 Arachis hypogaea HOM05D005919 ORTHO05D007176 9.3e-62 241.9 235 51.5
MCO09G503 Micromonas commoda HOM05D005919 ORTHO05D007176 1.0e-60 238.4 391 37.9
Zm00001eb050560 Zea mays HOM05D005919 ORTHO05D007176 1.3e-50 204.9 100 99.0
Zm00001eb260780 Zea mays HOM05D005919 ORTHO05D007176 1.3e-50 204.9 100 99.0
Zm00001eb302550 Zea mays HOM05D005919 ORTHO05D007176 1.3e-50 204.9 100 99.0
Glyma.17G068567 Glycine max HOM05D005919 ORTHO05D007176 1.1e-49 201.8 189 54.0
arahy.Tifrunner.gnm1.ann1.8I3VMK Arachis hypogaea HOM05D005919 ORTHO05D007176 2.1e-45 187.6 199 48.7
Sabra18G0085400 Salix brachista HOM05D005919 ORTHO05D007176 1.1e-41 175.3 139 59.0
CDE02G3325 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 7.1e-38 162.5 122 59.0
arahy.Tifrunner.gnm1.ann1.IETZ0A Arachis hypogaea HOM05D005919 ORTHO05D007176 1.6e-34 151.4 150 54.0
PRCOL_00000120 Prasinoderma coloniale HOM05D000722 ORTHO05D007176 8.4e-31 139.0 458 27.1
GSVIVG01023746001 Vitis vinifera HOM05D005919 ORTHO05D007176 5.0e-23 113.2 90 58.9
DCAR_017944 Daucus carota HOM05D005919 ORTHO05D007176 1.1e-19 102.1 144 41.0
Actinidia15384 Actinidia chinensis HOM05D005919 ORTHO05D007176 6.5e-15 86.3 88 50.0
AL1G16380 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 8.5e-15 85.9 74 60.8
Glyma.17G068633 Glycine max HOM05D005919 ORTHO05D007176 8.8e-12 75.9 129 40.3
SMO145G0125 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 2.8e-10 70.9 52 57.7
AUR62026693 Chenopodium quinoa HOM05D005919 ORTHO05D007176 7.0e-09 66.2 43 67.4
Actinidia20955 Actinidia chinensis HOM05D005919 ORTHO05D007176 1.0e-07 62.4 46 63.0


User provided reference genes

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