Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 2.0e-51 205.7 120 100.0
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 1.8e-47 192.6 120 94.2
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 2.8e-37 158.7 121 81.0
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 1.4e-36 156.4 121 80.2
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 3.5e-35 151.8 121 76.9
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.5e-35 151.8 121 80.2
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.5e-35 151.8 121 76.9
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.5e-35 151.8 121 76.9
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 5.9e-35 151.0 121 80.2
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 7.7e-35 150.6 121 62.0
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 2.2e-34 149.1 121 60.3
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.8e-34 148.3 121 76.0
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 5.5e-33 144.4 121 77.7
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 9.4e-33 143.7 121 76.9
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 9.4e-33 143.7 121 77.7
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 4.7e-32 141.4 121 76.0
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 2.6e-30 135.6 110 80.0
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 9.7e-30 133.7 107 56.1
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 1.7e-29 132.9 121 74.4
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 1.7e-29 132.9 121 62.0
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 2.2e-29 132.5 120 75.8
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 3.7e-29 131.7 118 77.1
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 6.3e-29 131.0 121 73.6
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 3.5e-27 125.2 119 55.5
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 1.0e-26 123.6 125 52.8
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.0e-26 123.6 125 52.8
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 2.2e-26 122.5 125 52.0
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.2e-25 118.6 119 52.9
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 2.1e-24 115.9 118 66.9
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 2.3e-23 112.5 121 66.9
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 5.2e-23 111.3 121 54.5
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 5.2e-23 111.3 121 66.9
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 8.8e-23 110.5 121 66.9
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 1.2e-22 110.2 119 50.4
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 2.0e-22 109.4 120 65.0
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 5.7e-22 107.8 116 65.5
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 9.7e-22 107.1 122 66.4
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 9.7e-22 107.1 122 66.4
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 9.7e-22 107.1 122 66.4
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 1.3e-21 106.7 121 65.3
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 1.7e-21 106.3 108 72.2
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 1.7e-21 106.3 121 51.2
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 1.7e-21 106.3 114 48.2
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 2.2e-21 105.9 121 64.5
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 3.7e-21 105.1 120 64.2
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.1e-20 103.6 121 64.5
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 1.8e-20 102.8 121 44.6
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.8e-20 102.8 121 63.6
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 3.1e-20 102.1 121 63.6
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 4.1e-20 101.7 123 62.6
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 4.1e-20 101.7 121 63.6
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 5.3e-20 101.3 121 43.8
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 5.3e-20 101.3 121 63.6
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 7.0e-20 100.9 122 63.1
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 7.0e-20 100.9 121 63.6
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 7.0e-20 100.9 92 56.5
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 7.0e-20 100.9 120 64.2
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 7.0e-20 100.9 121 49.6
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 7.0e-20 100.9 121 45.5
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 7.0e-20 100.9 121 65.3
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 7.0e-20 100.9 121 65.3
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 9.1e-20 100.5 121 62.8
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 1.2e-19 100.1 121 62.0
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 1.2e-19 100.1 121 62.0
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 1.2e-19 100.1 121 63.6
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 1.2e-19 100.1 121 64.5
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 2.0e-19 99.4 121 43.8
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 4.5e-19 98.2 121 62.0
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 5.9e-19 97.8 121 62.0
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 7.7e-19 97.4 121 61.2
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 7.7e-19 97.4 120 64.2
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 7.7e-19 97.4 117 63.2
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 1.0e-18 97.1 121 59.5
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 1.0e-18 97.1 121 59.5
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 1.0e-18 97.1 121 61.2
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 1.7e-18 96.3 121 47.9
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 1.7e-18 96.3 121 60.3
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 2.2e-18 95.9 121 43.0
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 2.2e-18 95.9 117 44.4
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 2.9e-18 95.5 121 43.0
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 2.9e-18 95.5 121 61.2
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 2.9e-18 95.5 122 63.1
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 2.9e-18 95.5 121 44.6
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 2.9e-18 95.5 122 63.1
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 3.8e-18 95.1 96 50.0
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 6.5e-18 94.4 121 42.1
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 8.5e-18 94.0 121 47.9
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 8.5e-18 94.0 118 59.3
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 1.1e-17 93.6 121 42.1
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 1.1e-17 93.6 121 52.9
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 1.5e-17 93.2 121 62.0
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 3.2e-17 92.0 121 61.2
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 1.2e-16 90.1 100 65.0
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 1.6e-16 89.7 120 60.8
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 2.1e-16 89.4 121 40.5
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 2.1e-16 89.4 122 58.2
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 6.1e-16 87.8 121 41.3
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 8.0e-16 87.4 132 40.9
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 8.0e-16 87.4 121 43.0
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 8.0e-16 87.4 121 57.9
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 8.0e-16 87.4 121 41.3
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 1.0e-15 87.0 121 54.5
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 1.4e-15 86.7 85 54.1
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 3.0e-15 85.5 115 39.1
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 8.8e-15 84.0 121 57.0
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 8.8e-15 84.0 121 38.0
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 2.0e-14 82.8 121 39.7
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.0e-14 82.8 145 37.2
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 2.0e-14 82.8 145 37.2
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 2.0e-14 82.8 145 37.2
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 2.0e-14 82.8 145 37.2
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 3.4e-14 82.0 122 49.2
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.7e-13 79.7 110 48.2
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 2.2e-13 79.3 88 46.6
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 2.2e-13 79.3 122 42.6
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.8e-13 79.0 81 50.6
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 3.7e-13 78.6 82 50.0
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 4.8e-13 78.2 121 37.2
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 4.8e-13 78.2 121 37.2
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 4.8e-13 78.2 122 54.9
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.1e-12 77.0 122 55.7
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 1.1e-12 77.0 101 38.6
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 1.4e-12 76.6 119 33.6
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 2.4e-12 75.9 122 54.1
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 4.1e-12 75.1 112 39.3
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 7.0e-12 74.3 122 36.1
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 9.1e-12 73.9 121 54.5
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 9.1e-12 73.9 123 52.8
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 9.1e-12 73.9 123 52.8
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 9.1e-12 73.9 123 52.8
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 9.1e-12 73.9 123 52.8
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 9.1e-12 73.9 99 60.6
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 9.1e-12 73.9 99 60.6
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 1.2e-11 73.6 111 35.1
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 1.2e-11 73.6 111 35.1
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.2e-11 73.6 111 35.1
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.6e-11 73.2 121 50.4
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.6e-11 73.2 123 35.8
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 2.0e-11 72.8 115 39.1
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 2.7e-11 72.4 122 53.3
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 4.5e-11 71.6 124 51.6
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 5.9e-11 71.2 125 34.4
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 3.8e-10 68.6 108 33.3
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 8.6e-10 67.4 108 33.3
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 9.5e-09 63.9 48 64.6
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 2.1e-08 62.8 95 36.8
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 5.2e-07 58.2 43 67.4


User provided reference genes

Program Settings