Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb228220 Zea mays HOM05D000290 ORTHO05D002418 5.6e-39 163.7 77 100.0
Zm00001eb146820 Zea mays HOM05D001865 ORTHO05D001815 5.7e-15 84.0 39 94.9
CiPaw.16G092300 Carya illinoinensis HOM05D000290 ORTHO05D002418 1.5e-07 59.3 34 82.4
Hund19666 Selenicereus undatus HOM05D000290 ORTHO05D002418 2.6e-07 58.5 35 77.1
Atru.chr4.398 Acer truncatum HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Aa31LG1G17030 Aethionema arabicum HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Ah.03g149280 Amaranthus hybridus HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
ATR0564G333 Amborella trichopoda HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
AL8G42440 Arabidopsis lyrata HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
AT5G64940 Arabidopsis thaliana HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
MSTRG.3805 Avicennia marina HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
EL10Ac6g14732 Beta vulgaris HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
BcaB02g09843 Brassica carinata HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
CSS0019128 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Carub.0008s2577 Capsella rubella HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
CAN.G267.22 Capsicum annuum HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
CiPaw.03G135100 Carya illinoinensis HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
CiPaw.04G092900 Carya illinoinensis HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
CDE05G1393 Ceratophyllum demersum HOM05D001902 ORTHO05D002418 5.7e-07 57.4 31 87.1
CDE05G2915 Ceratophyllum demersum HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Ca_17701_v3 Cicer arietinum L. HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
ClCG01G019260 Citrullus lanatus HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Ciclev10024947m.g Citrus clementina HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Cc07_g16030 Coffea canephora HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
COL.COLO4_11032 Corchorus olitorius HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Haze_25028 Corylus avellana HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
MELO3C007801.2 Cucumis melo HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
CsaV3_6G045940 Cucumis sativus L. HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
DCAR_011445 Daucus carota HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Dinv19505 Davidia involucrata HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Dinv42708 Davidia involucrata HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Duzib147G0442 Durio zibethinus HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
ECA238G4461 Erigeron canadensis HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Eucgr.H04831 Eucalyptus grandis HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Thhalv10003690m.g Eutrema salsugineum HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
FvH4_1g22080 Fragaria vesca HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
FAN19G1951 Fragaria x ananassa HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
FAN23G0918 Fragaria x ananassa HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
FAN26G1302 Fragaria x ananassa HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
FAN28G0415 Fragaria x ananassa HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Glyma.05G183100 Glycine max HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Glyma.08G140900 Glycine max HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
HanXRQChr15g0471941 Helianthus annuus HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Hma1.2p1_0070F.1_g037540 Hydrangea macrophylla HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Lj2A562G40 Lonicera japonica HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
MD01G1017900 Malus domestica HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
MD15G1334400 Malus domestica HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Manes.12G141200 Manihot esculenta HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Nn5g28931 Nelumbo nucifera HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Oeu002108.2 Olea europaea HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Phvul.002G264200 Phaseolus vulgaris HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Prupe.6G175300 Prunus persica HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
PGR004G2785 Punica granatum HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
QL06p032420 Quercus lobata HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Rhsim08G0007800 Rhododendron simsii HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
RcHm_v2.0_Chr2g0116161 Rosa chinensis HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
SalBow6G0294 Salvia bowleyana HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
SalBow6G4085 Salvia bowleyana HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Sp2g28020 Schrenkiella parvula HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Sed0011702 Sechium edule HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Hund03547 Selenicereus undatus HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Sc16g0004190 Simmondsia chinensis HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Solyc04g054190.3 Solanum lycopersicum HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Sopen04g023660 Solanum pennellii HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Thecc.01G110800 Theobroma cacao HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
TWI74G1368 Tripterygium wilfordii HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
unitig_0.g1736 Utricularia gibba HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
vmacro18626 Vaccinium macrocarpon HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
HPP92_016464 Vanilla planifolia HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
HPP92_027145 Vanilla planifolia HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
VMungo0251G3264 Vigna mungo HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
GSVIVG01022210001 Vitis vinifera HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Zm00001eb031890 Zea mays HOM05D024177 ORTHO05D026011 5.7e-07 57.4 31 87.1
Zm00001eb085710 Zea mays HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Zm00001eb159540 Zea mays HOM05D024177 ORTHO05D026011 5.7e-07 57.4 31 87.1
Zm00001eb244840 Zea mays HOM05D000290 ORTHO05D002418 5.7e-07 57.4 31 87.1
Actinidia33364 Actinidia chinensis HOM05D000290 ORTHO05D002418 9.7e-07 56.6 31 87.1
arahy.Tifrunner.gnm1.ann1.S3R8GT Arachis hypogaea HOM05D000290 ORTHO05D002418 9.7e-07 56.6 31 87.1
arahy.Tifrunner.gnm1.ann1.T0HPDF Arachis hypogaea HOM05D000290 ORTHO05D002418 9.7e-07 56.6 31 87.1
CARHR293830 Cardamine hirsuta HOM05D000290 ORTHO05D002418 9.7e-07 56.6 31 87.1
DCAR_021089 Daucus carota HOM05D000879 ORTHO05D002418 9.7e-07 56.6 34 76.5
Glyma.04G220200 Glycine max HOM05D000290 ORTHO05D002418 9.7e-07 56.6 31 87.1
Glyma.06G145700 Glycine max HOM05D000290 ORTHO05D002418 9.7e-07 56.6 31 87.1
Lj1g0021046 Lotus japonicus HOM05D000290 ORTHO05D002418 9.7e-07 56.6 31 87.1
Lj4g0021892 Lotus japonicus HOM05D000290 ORTHO05D002418 9.7e-07 56.6 31 87.1
Lalb_Chr12g0203571 Lupinus albus HOM05D000290 ORTHO05D002418 9.7e-07 56.6 31 87.1
Medtr8g091710 Medicago truncatula HOM05D000290 ORTHO05D002418 9.7e-07 56.6 31 87.1
Nitab4.5_0000156g0150 Nicotiana tabacum HOM05D000290 ORTHO05D002418 9.7e-07 56.6 31 87.1
Nitab4.5_0004814g0010 Nicotiana tabacum HOM05D000290 ORTHO05D002418 9.7e-07 56.6 31 87.1
Os02g0575500 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D002418 9.7e-07 56.6 31 87.1
PSO675G7818 Papaver somniferum HOM05D000290 ORTHO05D002418 9.7e-07 56.6 31 87.1
Peaxi162Scf01006g00026 Petunia axillaris HOM05D000290 ORTHO05D002418 9.7e-07 56.6 31 87.1
Psat5g192880 Pisum sativum HOM05D000290 ORTHO05D002418 9.7e-07 56.6 31 87.1
Psat7g051880 Pisum sativum HOM05D000290 ORTHO05D002418 9.7e-07 56.6 31 87.1
Potri.005G083200 Populus trichocarpa HOM05D000290 ORTHO05D002418 9.7e-07 56.6 31 87.1
Potri.007G082500 Populus trichocarpa HOM05D000290 ORTHO05D002418 9.7e-07 56.6 31 87.1
Sabra05G0068300 Salix brachista HOM05D000290 ORTHO05D002418 9.7e-07 56.6 31 87.1
Sabra07G0069100 Salix brachista HOM05D000290 ORTHO05D002418 9.7e-07 56.6 31 87.1
THA.LOC104799212 Tarenaya hassleriana HOM05D000290 ORTHO05D002418 9.7e-07 56.6 31 87.1
TPR.G2228 Trifolium pratense HOM05D000290 ORTHO05D002418 9.7e-07 56.6 31 87.1
BcaC01g02725 Brassica carinata HOM05D000290 ORTHO05D002418 1.3e-06 56.2 31 83.9
A06p31730 Brassica napus HOM05D000290 ORTHO05D002418 1.3e-06 56.2 31 83.9
C03p61250 Brassica napus HOM05D000290 ORTHO05D002418 1.3e-06 56.2 31 83.9
BolC3t18386H Brassica oleracea HOM05D000290 ORTHO05D002418 1.3e-06 56.2 31 83.9
BraA06t26106Z Brassica rapa HOM05D000290 ORTHO05D002418 1.3e-06 56.2 31 83.9
Gohir.A02G133800 Gossypium hirsutum HOM05D000290 ORTHO05D002418 1.3e-06 56.2 31 83.9
Gohir.D03G045200 Gossypium hirsutum HOM05D000290 ORTHO05D002418 1.3e-06 56.2 31 83.9
Gorai.003G046300 Gossypium raimondii HOM05D000290 ORTHO05D002418 1.3e-06 56.2 31 83.9
HanXRQChr14g0446221 Helianthus annuus HOM05D000290 ORTHO05D002418 1.3e-06 56.2 31 83.9
SalBow5G0667 Salvia bowleyana HOM05D000290 ORTHO05D002418 1.3e-06 56.2 31 83.9
TWI77G0161 Tripterygium wilfordii HOM05D000290 ORTHO05D002418 1.3e-06 56.2 31 83.9
CANSAT01G1322 Cannabis sativa HOM05D000290 ORTHO05D002418 1.7e-06 55.8 31 83.9
CBR_g4041 Chara braunii HOM05D000290 ORTHO05D002418 1.7e-06 55.8 28 92.9
AUR62003319 Chenopodium quinoa HOM05D000290 ORTHO05D002418 2.2e-06 55.5 31 83.9
AUR62016263 Chenopodium quinoa HOM05D000290 ORTHO05D002418 2.2e-06 55.5 31 83.9
Lalb_Chr13g0296171 Lupinus albus HOM05D000290 ORTHO05D002418 2.2e-06 55.5 31 83.9
Psat7g063560 Pisum sativum HOM05D000290 ORTHO05D002418 2.2e-06 55.5 31 83.9
TAR628G0248 Trochodendron aralioides HOM05D000290 ORTHO05D002418 2.2e-06 55.5 31 83.9
AagrBONN_evm.TU.Sc2ySwM_344.1524 Anthoceros agrestis HOM05D000290 ORTHO05D002418 2.8e-06 55.1 31 83.9
Ca_16887_v3 Cicer arietinum L. HOM05D000290 ORTHO05D002418 2.8e-06 55.1 31 83.9
Mapoly0001s0423 Marchantia polymorpha HOM05D000290 ORTHO05D002418 2.8e-06 55.1 31 83.9
Phvul.009G140432 Phaseolus vulgaris HOM05D000290 ORTHO05D002418 2.8e-06 55.1 31 83.9
Pp3c15_3930 Physcomitrium patens HOM05D000290 ORTHO05D002418 2.8e-06 55.1 31 83.9
Aqoxy6G00498 Aquilegia oxysepala HOM05D000290 ORTHO05D002418 3.7e-06 54.7 31 83.9
Migut.H02416 Erythranthe guttata HOM05D000290 ORTHO05D002418 3.7e-06 54.7 30 83.3
SGA_v2.0_scaffold47G17723 Striga asiatica HOM05D000290 ORTHO05D002418 3.7e-06 54.7 30 86.7
MSTRG.6634 Avicennia marina HOM05D000290 ORTHO05D002418 4.8e-06 54.3 34 73.5
Medtr3g094740 Medicago truncatula HOM05D000290 ORTHO05D002418 4.8e-06 54.3 31 80.6
Pp3c15_9220 Physcomitrium patens HOM05D000290 ORTHO05D002418 4.8e-06 54.3 34 73.5
SMO361G0768 Selaginella moellendorffii HOM05D000290 ORTHO05D002418 4.8e-06 54.3 31 80.6
TPR.G23736 Trifolium pratense HOM05D000290 ORTHO05D002418 4.8e-06 54.3 31 80.6
AagrBONN_evm.TU.Sc2ySwM_228.4416 Anthoceros agrestis HOM05D000290 ORTHO05D002418 6.3e-06 53.9 39 66.7
Aqoxy4G02289 Aquilegia oxysepala HOM05D004103 ORTHO05D005242 6.3e-06 53.9 34 70.6
MSTRG.12250 Avicennia marina HOM05D000290 ORTHO05D002418 6.3e-06 53.9 34 73.5
CAN.G177.13 Capsicum annuum HOM05D000290 ORTHO05D002418 6.3e-06 53.9 31 77.4
Mapoly0186s0017 Marchantia polymorpha HOM05D000290 ORTHO05D002418 6.3e-06 53.9 34 73.5
Nn1g07516 Nelumbo nucifera HOM05D000290 ORTHO05D002418 6.3e-06 53.9 34 70.6
CARHR082410 Cardamine hirsuta HOM05D000290 ORTHO05D002418 8.2e-06 53.5 34 70.6
Cre08.g369150 Chlamydomonas reinhardtii HOM05D000290 ORTHO05D002418 8.2e-06 53.5 34 70.6
Ca_16344_v3 Cicer arietinum L. HOM05D000290 ORTHO05D002418 8.2e-06 53.5 34 70.6
Glyma.13G007200 Glycine max HOM05D000290 ORTHO05D002418 8.2e-06 53.5 34 70.6
Lj6g0018577 Lotus japonicus HOM05D000290 ORTHO05D002418 8.2e-06 53.5 34 70.6
Medtr3g082750 Medicago truncatula HOM05D000290 ORTHO05D002418 8.2e-06 53.5 34 70.6
Phvul.007G121568 Phaseolus vulgaris HOM05D000290 ORTHO05D002418 8.2e-06 53.5 34 70.6
Psat5g104600 Pisum sativum HOM05D000290 ORTHO05D002418 8.2e-06 53.5 34 70.6
TPR.G22475 Trifolium pratense HOM05D000290 ORTHO05D002418 8.2e-06 53.5 34 70.6
Zm00001eb323540 Zea mays HOM05D000290 ORTHO05D002418 8.2e-06 53.5 31 83.9


User provided reference genes

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