Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 8.2e-103 377.1 196 100.0
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 6.6e-60 234.6 170 66.5
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 8.4e-47 191.0 179 52.0
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 8.4e-47 191.0 176 52.3
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 1.9e-46 189.9 176 52.8
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 2.3e-44 183.0 176 50.0
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 3.0e-44 182.6 212 47.2
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 1.5e-43 180.3 210 49.5
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 3.3e-43 179.1 175 48.6
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 3.3e-43 179.1 175 52.0
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 4.3e-43 178.7 175 48.6
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 4.3e-43 178.7 175 51.4
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 9.6e-43 177.6 177 50.3
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 1.3e-42 177.2 188 49.5
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 1.3e-42 177.2 175 50.9
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 1.6e-42 176.8 179 50.8
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 2.1e-42 176.4 175 49.1
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 3.6e-42 175.6 183 47.5
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 4.8e-42 175.3 178 50.0
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 6.2e-42 174.9 180 47.8
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 8.1e-42 174.5 180 50.6
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 1.4e-41 173.7 176 52.3
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 1.8e-41 173.3 187 48.1
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 1.8e-41 173.3 178 48.3
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 2.4e-41 172.9 182 48.4
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 2.4e-41 172.9 191 45.0
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 4.0e-41 172.2 183 50.3
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 9.0e-41 171.0 167 48.5
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 9.0e-41 171.0 179 49.2
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 1.2e-40 170.6 173 49.1
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 1.2e-40 170.6 175 51.4
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 1.2e-40 170.6 176 48.9
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 2.0e-40 169.9 179 49.7
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 2.6e-40 169.5 205 45.4
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 3.4e-40 169.1 167 50.9
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 4.5e-40 168.7 174 51.1
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 5.8e-40 168.3 182 48.4
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 7.6e-40 167.9 167 52.1
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 7.6e-40 167.9 167 49.7
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 1.3e-39 167.2 167 50.3
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 1.7e-39 166.8 211 43.6
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 2.2e-39 166.4 173 49.7
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 2.2e-39 166.4 176 47.2
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 3.8e-39 165.6 176 47.7
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 3.8e-39 165.6 176 47.7
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 4.9e-39 165.2 176 48.9
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 6.4e-39 164.9 174 47.7
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 1.4e-38 163.7 211 43.6
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 1.4e-38 163.7 200 44.0
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 1.4e-38 163.7 183 47.0
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 1.4e-38 163.7 188 46.8
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 1.9e-38 163.3 207 49.8
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 1.9e-38 163.3 175 49.1
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 2.4e-38 162.9 217 43.8
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 2.4e-38 162.9 176 47.2
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 4.2e-38 162.2 161 47.8
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 7.1e-38 161.4 186 45.7
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 7.1e-38 161.4 181 47.0
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 7.1e-38 161.4 170 48.2
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 7.1e-38 161.4 176 50.6
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 9.3e-38 161.0 154 51.9
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 9.3e-38 161.0 183 46.4
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 9.3e-38 161.0 180 48.9
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 1.2e-37 160.6 206 43.7
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 2.1e-37 159.8 174 47.1
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 2.7e-37 159.5 174 45.4
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 2.7e-37 159.5 182 45.6
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 3.5e-37 159.1 182 48.9
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 6.0e-37 158.3 221 38.9
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 6.0e-37 158.3 221 38.9
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 6.0e-37 158.3 221 38.9
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 7.9e-37 157.9 221 38.9
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 7.9e-37 157.9 221 38.9
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 7.9e-37 157.9 171 49.1
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 1.3e-36 157.1 187 41.7
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 1.8e-36 156.8 171 48.0
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 2.3e-36 156.4 178 48.9
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 2.3e-36 156.4 179 46.9
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 3.9e-36 155.6 188 45.2
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 5.1e-36 155.2 206 44.2
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 8.7e-36 154.5 182 46.7
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 8.7e-36 154.5 176 46.0
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 1.1e-35 154.1 174 43.7
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 1.5e-35 153.7 180 44.4
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.5e-35 153.7 177 45.2
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 3.3e-35 152.5 217 41.0
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 1.3e-34 150.6 177 43.5
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 8.1e-34 147.9 209 40.7
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 1.4e-33 147.1 180 43.3
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 2.4e-33 146.4 210 40.5
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 3.1e-33 146.0 190 42.6
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 3.1e-33 146.0 179 43.6
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 9.0e-33 144.4 198 40.4
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 1.5e-32 143.7 183 43.7
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 2.0e-32 143.3 180 45.6
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 3.4e-32 142.5 202 42.6
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 4.5e-32 142.1 216 38.0
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 1.7e-31 140.2 199 39.7
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 3.8e-31 139.0 204 41.2
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 8.4e-31 137.9 178 44.4
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 1.9e-30 136.7 170 42.9
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 2.5e-30 136.3 204 40.7
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 6.0e-29 131.7 181 39.2
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 7.9e-29 131.3 182 40.1
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 1.0e-28 131.0 136 48.5
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 2.3e-28 129.8 135 48.9
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 3.9e-28 129.0 174 42.5
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 4.3e-27 125.6 139 45.3
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 8.2e-26 121.3 165 43.6
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 1.1e-25 120.9 100 55.0
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 1.4e-25 120.6 165 43.0
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.8e-25 120.2 165 43.0
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 1.8e-25 120.2 184 40.2
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 1.8e-25 120.2 236 33.9
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 4.0e-25 119.0 94 54.3
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 9.0e-25 117.9 117 53.8
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 1.2e-24 117.5 169 40.2
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 1.5e-24 117.1 176 35.2
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 1.5e-24 117.1 101 52.5
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 3.4e-24 115.9 174 38.5
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 4.5e-24 115.5 174 39.7
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 4.5e-24 115.5 168 40.5
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.3e-23 114.0 175 36.6
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 2.9e-23 112.8 100 52.0
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 4.9e-23 112.1 129 43.4
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 6.5e-23 111.7 176 35.8
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 1.4e-22 110.5 170 37.1
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 4.2e-22 109.0 188 36.7
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 5.5e-22 108.6 110 48.2
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 1.2e-21 107.5 107 46.7
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 6.0e-21 105.1 194 32.5
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 7.9e-21 104.8 134 44.0
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 1.8e-20 103.6 127 45.7
CARHR160680 Cardamine hirsuta HOM05D001544 ORTHO05D005712 5.1e-20 102.1 185 36.8
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 1.1e-19 100.9 92 51.1
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 1.1e-19 100.9 147 42.9
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 4.3e-19 99.0 107 44.9
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 1.3e-18 97.4 120 39.2
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 1.6e-18 97.1 141 41.1
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.4e-17 94.0 174 31.6
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 1.4e-17 94.0 136 41.2
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 2.4e-17 93.2 191 30.4
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 4.1e-17 92.4 143 39.9
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 5.3e-17 92.0 132 37.9
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 2.6e-16 89.7 74 52.7
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 1.9e-14 83.6 167 33.5
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.2e-13 80.9 93 46.2
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 2.7e-13 79.7 97 42.3
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 4.3e-11 72.4 240 27.1
Actinidia23006 Actinidia chinensis HOM05D001544 ORTHO05D005712 1.7e-10 70.5 59 54.2
MBI14_g19736_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 2.2e-10 70.1 57 56.1
PSO675G0307 Papaver somniferum HOM05D001544 ORTHO05D005712 4.8e-10 68.9 122 36.1
TAR626G0405 Trochodendron aralioides HOM05D000010 ORTHO05D016350 1.4e-06 57.4 42 59.5
HPP92_028379 Vanilla planifolia HOM05D001544 ORTHO05D005712 2.5e-06 56.6 123 32.5


User provided reference genes

Program Settings