Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 6.1e-244 847.0 427 100.0
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 2.0e-226 788.9 423 92.2
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.1e-179 633.6 430 76.0
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 3.5e-175 618.6 391 80.1
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 4.6e-175 618.2 384 79.4
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 7.9e-175 617.5 391 79.8
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.3e-174 616.7 363 84.0
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 2.3e-174 615.9 420 75.5
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 3.0e-174 615.5 391 79.5
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 3.9e-174 615.1 433 72.5
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 1.1e-173 613.6 363 84.3
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 1.5e-173 613.2 387 80.1
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 1.5e-173 613.2 430 74.2
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 2.5e-173 612.5 388 79.9
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 3.3e-173 612.1 403 77.7
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 4.3e-173 611.7 432 74.1
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 4.3e-173 611.7 432 74.1
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 5.7e-173 611.3 388 79.9
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 5.7e-173 611.3 363 83.7
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 5.7e-173 611.3 432 73.8
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 9.7e-173 610.5 363 83.2
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 1.3e-172 610.1 428 73.8
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 1.6e-172 609.8 393 79.1
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 1.6e-172 609.8 378 80.4
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 2.2e-172 609.4 364 83.0
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 2.8e-172 609.0 405 76.5
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 4.8e-172 608.2 364 83.2
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 4.8e-172 608.2 394 78.7
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 6.3e-172 607.8 387 79.3
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 8.2e-172 607.4 362 83.1
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 8.2e-172 607.4 387 79.6
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 1.4e-171 606.7 432 73.4
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 1.4e-171 606.7 361 82.0
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 2.4e-171 605.9 362 83.1
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 3.1e-171 605.5 397 76.6
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 4.1e-171 605.1 432 73.1
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 4.1e-171 605.1 389 78.9
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 5.3e-171 604.7 363 82.4
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 6.9e-171 604.4 428 74.5
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 9.0e-171 604.0 384 78.9
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 1.5e-170 603.2 391 78.5
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 2.0e-170 602.8 363 81.8
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 2.0e-170 602.8 428 74.5
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 2.6e-170 602.4 383 79.1
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 2.6e-170 602.4 394 78.2
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 4.5e-170 601.7 388 79.1
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 4.5e-170 601.7 358 83.0
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 1.3e-169 600.1 400 74.5
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 1.7e-169 599.7 386 79.0
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 2.9e-169 599.0 360 82.5
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 2.9e-169 599.0 405 75.1
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 3.8e-169 598.6 387 78.8
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 1.1e-168 597.0 398 75.4
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 1.1e-168 597.0 364 81.0
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 1.9e-168 596.3 398 76.1
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 7.2e-168 594.3 368 80.7
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 9.4e-168 594.0 407 75.4
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 9.4e-168 594.0 389 77.6
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 1.6e-167 593.2 399 76.2
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 2.1e-167 592.8 390 77.2
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 4.6e-167 591.7 432 72.0
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 4.6e-167 591.7 384 77.9
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 6.1e-167 591.3 339 84.7
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 7.9e-167 590.9 363 81.0
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 1.8e-166 589.7 430 70.7
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 3.0e-166 589.0 389 77.4
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 3.0e-166 589.0 386 77.7
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 5.1e-166 588.2 393 76.8
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 2.5e-165 585.9 426 70.2
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 3.3e-165 585.5 356 81.7
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 3.3e-165 585.5 414 72.7
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 7.4e-165 584.3 356 82.0
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 9.7e-165 583.9 408 72.8
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.2e-164 582.8 360 80.6
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 2.2e-164 582.8 363 80.7
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 2.8e-164 582.4 358 82.1
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 2.8e-164 582.4 322 87.3
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 1.1e-163 580.5 433 72.3
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 1.1e-163 580.5 393 76.3
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 1.1e-163 580.5 358 81.8
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 2.4e-163 579.3 426 72.5
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 2.4e-163 579.3 363 80.7
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 3.1e-163 578.9 427 71.9
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 6.9e-163 577.8 384 77.9
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 6.9e-163 577.8 365 80.3
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 2.0e-162 576.2 395 75.2
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 2.0e-162 576.2 384 76.8
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 2.0e-162 576.2 358 81.6
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 4.5e-162 575.1 382 77.5
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 4.5e-162 575.1 358 80.7
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 4.5e-162 575.1 358 80.7
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 1.7e-161 573.2 363 79.1
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 1.7e-161 573.2 314 88.5
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 1.7e-161 573.2 381 77.4
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 5.0e-161 571.6 317 87.4
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 5.0e-161 571.6 384 76.3
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 6.5e-161 571.2 428 71.0
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 8.5e-161 570.9 358 80.2
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.1e-160 570.5 358 80.4
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 1.4e-160 570.1 358 80.4
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.4e-160 570.1 358 80.4
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 1.9e-160 569.7 380 75.8
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 4.2e-160 568.5 390 75.1
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 9.4e-160 567.4 387 76.0
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 7.9e-159 564.3 397 73.8
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 1.4e-158 563.5 311 86.2
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 1.0e-150 537.3 405 67.9
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 2.3e-150 536.2 378 72.0
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 5.2e-150 535.0 431 65.9
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 4.8e-148 528.5 381 69.8
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 1.1e-147 527.3 387 72.6
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 1.4e-147 526.9 363 74.9
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 1.4e-147 526.9 363 74.9
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 3.1e-147 525.8 367 73.3
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 2.3e-142 509.6 363 72.7
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 2.4e-139 499.6 279 86.7
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 1.2e-133 480.7 353 68.0
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 1.2e-133 480.7 347 69.5
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 1.4e-131 473.8 396 64.1
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 2.4e-131 473.0 366 71.0
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 2.4e-131 473.0 374 65.5
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 2.4e-131 473.0 332 70.2
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 5.4e-131 471.9 346 69.4
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 2.7e-130 469.5 370 66.5
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 7.7e-130 468.0 370 65.9
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 7.7e-130 468.0 370 65.9
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 1.5e-128 463.8 347 69.2
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 7.2e-128 461.5 282 81.6
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 1.6e-127 460.3 369 65.0
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 8.0e-127 458.0 369 64.8
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 3.0e-126 456.1 264 84.8
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 9.8e-125 451.1 368 61.1
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 7.3e-120 434.9 348 60.9
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 1.7e-116 423.7 346 64.2
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 3.7e-116 422.5 309 67.6
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 1.6e-111 407.1 276 75.4
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.9e-107 393.7 278 71.2
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 1.4e-102 377.5 224 82.6
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 3.7e-100 369.4 257 72.4
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 3.6e-95 352.8 287 67.6
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 6.6e-81 305.4 227 67.8
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.6e-71 274.2 234 62.8
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 8.1e-71 271.9 190 72.6
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 1.4e-70 271.2 251 59.0
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 2.5e-59 233.8 291 46.4
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.1e-54 218.4 300 46.0
Psat0s476g0040 Pisum sativum HOM05D003910 ORTHO05D004622 1.1e-54 218.4 153 69.3
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 9.7e-48 195.3 308 38.3
arahy.Tifrunner.gnm1.ann1.875P1G Arachis hypogaea HOM05D003910 ORTHO05D004622 2.2e-47 194.1 181 58.6
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.3e-44 184.9 148 66.2
arahy.Tifrunner.gnm1.ann1.YZW1CW Arachis hypogaea HOM05D003910 ORTHO05D004622 1.7e-44 184.5 181 56.4
BcaB06g27098 Brassica carinata HOM05D003910 ORTHO05D004622 5.0e-44 183.0 101 83.2
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.4e-43 181.4 100 88.0
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 3.6e-42 176.8 104 80.8
BcaB05g22163 Brassica carinata HOM05D003910 ORTHO05D004622 4.7e-42 176.4 101 80.2
BcaB04g19319 Brassica carinata HOM05D003910 ORTHO05D004622 1.4e-38 164.9 111 72.1
arahy.Tifrunner.gnm1.ann1.I497ZX Arachis hypogaea HOM05D003910 ORTHO05D004622 2.0e-37 161.0 177 51.4
arahy.Tifrunner.gnm1.ann1.MAXD3F Arachis hypogaea HOM05D003910 ORTHO05D004622 2.6e-37 160.6 172 54.7
Oeu059446.1 Olea europaea HOM05D003910 ORTHO05D004622 2.1e-34 151.0 77 85.7
Haze_27000 Corylus avellana HOM05D003910 ORTHO05D004622 2.3e-33 147.5 222 37.4
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 3.0e-33 147.1 122 64.8
arahy.Tifrunner.gnm1.ann1.FDSF2K Arachis hypogaea HOM05D003910 ORTHO05D004622 4.4e-32 143.3 151 53.6
arahy.Tifrunner.gnm1.ann1.KLV74S Arachis hypogaea HOM05D003910 ORTHO05D004622 1.3e-31 141.7 177 49.2
SpUn0247_0040 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.3e-31 141.7 74 83.8
TAR622G0657 Trochodendron aralioides HOM05D003910 ORTHO05D004622 4.1e-30 136.7 136 55.9
Actinidia03463 Actinidia chinensis HOM05D003910 ORTHO05D004622 6.1e-26 122.9 72 83.3
TAR371G0308 Trochodendron aralioides HOM05D003910 ORTHO05D004622 7.0e-22 109.4 74 73.0
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 6.5e-20 102.8 106 54.7
arahy.Tifrunner.gnm1.ann1.ZWJ939 Arachis hypogaea HOM05D000074 ORTHO05D004622 4.5e-13 80.1 162 37.0
Aa31sc107G60 Aethionema arabicum HOM05D003910 ORTHO05D059684 1.9e-11 74.7 49 77.6
SEGI_40510 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 4.2e-11 73.6 51 66.7
Nn3g17591 Nelumbo nucifera HOM05D003910 ORTHO05D004622 8.9e-09 65.9 36 88.9
Lsat_1_v5_gn_8_143861 Lactuca sativa HOM05D003910 ORTHO05D004622 3.4e-08 63.9 59 59.3
Psat1g078960 Pisum sativum HOM05D003910 ORTHO05D004622 1.7e-07 61.6 113 39.8
Psat1g079000 Pisum sativum HOM05D003910 ORTHO05D004622 1.7e-07 61.6 113 39.8


User provided reference genes

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