Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 1.2e-172 609.8 318 100.0
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 2.7e-111 406.0 325 67.7
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 3.1e-51 206.5 318 42.5
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 1.7e-49 200.7 309 39.5
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 1.7e-49 200.7 319 39.2
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 2.9e-49 199.9 317 40.1
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 7.2e-48 195.3 321 38.6
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 2.7e-47 193.4 359 36.8
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 6.1e-47 192.2 318 38.1
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 6.1e-47 192.2 318 39.6
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 1.8e-46 190.7 316 38.0
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 8.8e-46 188.3 312 39.7
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 2.6e-45 186.8 319 38.9
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 4.4e-45 186.0 315 40.6
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 4.4e-45 186.0 314 38.5
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 7.5e-45 185.3 324 38.9
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 1.3e-44 184.5 312 39.1
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 8.3e-44 181.8 318 39.0
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 1.1e-43 181.4 320 37.8
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 1.8e-43 180.6 319 38.2
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 2.4e-43 180.3 318 36.5
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 5.3e-43 179.1 313 38.3
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 5.3e-43 179.1 310 38.1
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 9.1e-43 178.3 309 36.6
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 9.1e-43 178.3 315 35.9
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 1.6e-42 177.6 326 38.3
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 2.0e-42 177.2 320 35.9
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 5.9e-42 175.6 316 37.0
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 7.7e-42 175.3 298 40.3
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 1.7e-41 174.1 317 37.5
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 1.7e-41 174.1 314 36.9
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 2.9e-41 173.3 320 39.4
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 3.8e-41 172.9 306 36.9
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 8.5e-41 171.8 311 37.6
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 1.9e-40 170.6 315 37.5
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 2.5e-40 170.2 324 36.7
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 2.5e-40 170.2 301 37.5
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 3.2e-40 169.9 316 36.4
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 4.2e-40 169.5 310 36.8
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 5.5e-40 169.1 314 37.3
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 5.5e-40 169.1 315 36.5
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 5.5e-40 169.1 318 36.2
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 7.2e-40 168.7 320 35.6
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 1.6e-39 167.5 319 36.7
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 2.1e-39 167.2 307 35.5
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 2.7e-39 166.8 365 35.6
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 8.0e-39 165.2 301 36.2
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 2.3e-38 163.7 321 34.9
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 6.8e-38 162.2 314 35.0
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 1.2e-37 161.4 323 35.9
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 1.2e-37 161.4 308 35.4
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.5e-37 161.0 322 34.8
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 2.0e-37 160.6 308 35.1
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 2.6e-37 160.2 318 34.0
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 7.5e-37 158.7 301 34.2
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 1.1e-35 154.8 316 34.8
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 1.1e-35 154.8 299 35.8
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 2.4e-35 153.7 294 35.7
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 7.0e-35 152.1 321 34.0
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 9.1e-35 151.8 307 35.2
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 2.0e-34 150.6 311 36.7
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 4.5e-34 149.4 309 35.3
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 4.5e-34 149.4 417 29.7
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 5.9e-34 149.1 307 36.2
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 7.7e-34 148.7 306 35.0
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 1.3e-33 147.9 309 33.7
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.7e-33 147.5 297 35.0
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 1.7e-33 147.5 309 33.3
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 1.7e-33 147.5 285 36.8
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 2.3e-33 147.1 320 34.4
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 2.3e-33 147.1 311 33.8
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 2.9e-33 146.7 307 34.5
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 3.8e-33 146.4 305 33.8
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 8.6e-33 145.2 305 35.1
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 8.6e-33 145.2 275 36.0
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 1.1e-32 144.8 304 32.6
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 1.1e-32 144.8 285 36.5
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 1.1e-32 144.8 305 35.7
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 3.3e-32 143.3 308 33.4
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 3.3e-32 143.3 307 33.9
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 5.5e-32 142.5 309 33.7
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 9.5e-32 141.7 317 35.3
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 9.5e-32 141.7 295 33.6
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 1.2e-31 141.4 309 33.3
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 2.1e-31 140.6 308 32.8
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 6.1e-31 139.0 319 32.6
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 1.0e-30 138.3 266 34.2
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 1.4e-30 137.9 309 33.0
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 1.4e-30 137.9 305 34.8
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 3.0e-30 136.7 311 34.7
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 5.2e-30 136.0 300 32.7
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 1.2e-29 134.8 309 32.7
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 2.6e-29 133.7 310 33.5
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 4.4e-29 132.9 309 33.3
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 1.3e-28 131.3 305 33.8
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 6.3e-28 129.0 309 32.4
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 8.3e-28 128.6 323 31.0
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 8.3e-28 128.6 297 32.3
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 2.7e-26 123.6 311 33.8
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 1.7e-25 120.9 254 33.5
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 1.7e-25 120.9 288 33.3
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 2.3e-25 120.6 222 36.5
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.1e-24 118.2 237 31.6
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 1.1e-24 118.2 146 44.5
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 3.3e-24 116.7 293 29.0
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 4.3e-24 116.3 150 42.7
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 4.7e-23 112.8 216 36.6
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 1.4e-22 111.3 271 31.4
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 2.3e-22 110.5 311 31.2
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 4.0e-22 109.8 349 30.4
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 1.2e-21 108.2 265 32.1
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 1.2e-21 108.2 265 32.1
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 1.2e-21 108.2 265 32.1
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 1.2e-21 108.2 316 30.1
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 3.4e-21 106.7 251 31.9
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 2.2e-20 104.0 226 31.4
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 5.4e-19 99.4 155 41.9
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 2.0e-18 97.4 244 31.1
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 3.5e-18 96.7 227 29.5
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 3.0e-17 93.6 214 29.9
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 1.1e-14 85.1 154 34.4
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 5.2e-14 82.8 153 35.3
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 1.2e-13 81.6 353 27.8
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 1.3e-12 78.2 310 28.1
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 3.2e-11 73.6 101 40.6
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 7.8e-10 68.9 176 31.8
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 1.0e-09 68.6 321 27.1
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 1.7e-09 67.8 101 35.6
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 5.1e-09 66.2 101 42.6
AagrBONN_evm.TU.Sc2ySwM_228.2452 Anthoceros agrestis HOM05D034800 ORTHO05D006884 3.6e-07 60.1 154 27.9
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 1.4e-06 58.2 51 60.8
SMO367G0141 Selaginella moellendorffii HOM05D005675 ORTHO05D006884 2.3e-06 57.4 161 28.6


User provided reference genes

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