Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 1.5e-188 662.9 382 100.0
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 5.7e-132 474.9 368 81.2
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 1.1e-69 268.1 394 54.8
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 7.9e-41 172.2 391 42.2
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 1.9e-39 167.5 384 39.3
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 9.6e-39 165.2 392 38.3
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 6.2e-38 162.5 397 39.0
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 8.1e-38 162.2 403 39.7
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 1.4e-37 161.4 382 40.3
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 2.4e-37 160.6 386 39.4
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 4.0e-37 159.8 384 39.1
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 5.3e-37 159.5 398 39.4
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 5.3e-37 159.5 386 39.6
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 6.9e-37 159.1 392 42.1
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 9.0e-37 158.7 380 41.8
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 1.2e-36 158.3 385 37.9
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.5e-36 157.9 387 37.5
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 2.6e-36 157.1 399 40.1
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 2.6e-36 157.1 393 39.4
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 3.4e-36 156.8 398 35.9
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 9.9e-36 155.2 400 40.0
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 9.9e-36 155.2 383 42.8
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 1.7e-35 154.5 351 38.5
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.7e-35 154.5 386 39.4
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 1.7e-35 154.5 398 36.9
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 2.2e-35 154.1 384 39.6
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 2.2e-35 154.1 389 41.4
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 4.9e-35 152.9 396 38.9
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 8.4e-35 152.1 393 38.2
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 8.4e-35 152.1 381 38.3
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 1.4e-34 151.4 384 41.4
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 3.2e-34 150.2 396 39.9
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 9.3e-34 148.7 403 37.0
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.2e-33 148.3 395 39.5
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 2.1e-33 147.5 386 36.3
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 2.1e-33 147.5 391 40.9
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 2.7e-33 147.1 388 38.9
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 2.7e-33 147.1 384 37.8
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 6.0e-33 146.0 403 39.5
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 7.9e-33 145.6 383 36.0
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.3e-32 144.8 383 34.2
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.8e-32 144.4 389 37.5
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 2.3e-32 144.1 380 36.8
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 2.3e-32 144.1 396 41.9
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 3.0e-32 143.7 395 38.0
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 3.9e-32 143.3 412 38.6
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 3.9e-32 143.3 395 39.7
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 6.7e-32 142.5 389 37.0
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 8.7e-32 142.1 405 39.0
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 1.5e-31 141.4 387 39.3
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.9e-31 141.0 391 37.9
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 3.3e-31 140.2 387 38.5
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 5.6e-31 139.4 385 37.4
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 5.6e-31 139.4 391 37.9
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 7.4e-31 139.0 387 35.1
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 7.4e-31 139.0 395 40.0
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 1.6e-30 137.9 396 40.2
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 1.6e-30 137.9 400 38.0
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 1.6e-30 137.9 388 34.8
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 2.8e-30 137.1 403 37.0
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 3.7e-30 136.7 385 38.7
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 3.1e-29 133.7 404 37.9
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 4.0e-29 133.3 337 37.7
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 5.3e-29 132.9 387 37.0
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 6.9e-29 132.5 378 38.6
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 9.0e-29 132.1 403 38.0
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 2.6e-28 130.6 361 36.0
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 4.5e-28 129.8 350 42.6
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 5.8e-28 129.4 385 34.3
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 1.3e-27 128.3 397 38.8
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 1.7e-27 127.9 368 33.2
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 2.2e-27 127.5 396 36.4
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 2.2e-27 127.5 399 35.6
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 2.2e-27 127.5 394 37.1
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.9e-27 127.1 339 37.5
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 2.9e-27 127.1 365 34.2
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 2.9e-27 127.1 398 36.7
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 3.8e-27 126.7 382 39.5
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 3.8e-27 126.7 347 41.8
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 4.9e-27 126.3 385 37.4
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 6.5e-27 125.9 390 39.2
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 8.4e-27 125.6 383 37.1
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.1e-26 125.2 339 38.6
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 1.1e-26 125.2 408 33.3
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 3.2e-26 123.6 382 35.9
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.2e-26 123.6 384 35.7
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.2e-26 123.6 383 36.3
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 4.2e-26 123.2 389 36.2
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 5.5e-26 122.9 388 38.7
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 5.5e-26 122.9 422 32.7
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 5.5e-26 122.9 382 37.4
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 7.1e-26 122.5 398 34.4
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 7.1e-26 122.5 384 34.6
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 7.1e-26 122.5 416 33.4
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 7.1e-26 122.5 363 35.8
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 9.3e-26 122.1 396 33.3
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 1.2e-25 121.7 390 38.7
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.2e-25 121.7 383 32.4
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.2e-25 121.7 384 35.2
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 1.6e-25 121.3 400 32.2
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 1.6e-25 121.3 400 32.2
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.6e-25 121.3 421 32.5
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 1.6e-25 121.3 363 37.2
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 1.6e-25 121.3 381 35.2
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 2.7e-25 120.6 353 40.2
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 3.5e-25 120.2 304 38.8
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 1.3e-24 118.2 387 35.1
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 1.8e-24 117.9 388 38.1
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 3.0e-24 117.1 381 37.0
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 3.0e-24 117.1 393 38.7
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.0e-24 117.1 344 35.5
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 6.7e-24 115.9 389 36.2
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 6.7e-24 115.9 387 31.8
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 2.5e-23 114.0 296 36.1
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 9.6e-23 112.1 382 33.8
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 1.6e-22 111.3 391 31.7
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 3.7e-22 110.2 392 34.2
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 3.7e-22 110.2 409 34.2
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 6.3e-22 109.4 356 37.1
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 1.1e-21 108.6 359 38.7
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 1.8e-21 107.8 390 34.6
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 1.8e-21 107.8 394 33.5
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.8e-21 107.8 382 33.2
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 4.1e-21 106.7 389 36.0
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 5.3e-21 106.3 402 32.8
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 6.9e-21 105.9 361 33.8
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.5e-20 104.8 330 33.6
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 2.0e-20 104.4 187 44.9
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 2.0e-20 104.4 380 31.1
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 2.6e-20 104.0 280 37.5
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 2.2e-19 100.9 391 33.5
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 2.9e-19 100.5 387 30.0
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 3.8e-19 100.1 398 32.7
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 3.8e-19 100.1 312 35.3
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 5.0e-19 99.8 350 34.9
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 8.4e-19 99.0 267 37.8
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.1e-18 98.6 330 33.3
Zm00001eb167470 Zea mays HOM05D003676 ORTHO05D004262 1.4e-18 98.2 75 69.3
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 7.2e-18 95.9 372 34.1
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 4.6e-17 93.2 385 29.9
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 7.9e-17 92.4 377 33.7
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 1.0e-16 92.0 382 33.2
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 2.5e-15 87.4 148 49.3
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 2.5e-15 87.4 148 49.3
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 2.5e-15 87.4 352 31.8
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 4.3e-15 86.7 148 44.6
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 4.3e-15 86.7 374 32.6
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 1.6e-14 84.7 150 42.7
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 2.8e-14 84.0 150 47.3
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 2.8e-14 84.0 150 47.3
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 8.2e-14 82.4 151 43.0
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 1.4e-13 81.6 148 46.6
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 2.4e-13 80.9 262 37.0
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 2.0e-12 77.8 314 31.8
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 3.4e-12 77.0 155 45.8
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 1.7e-11 74.7 158 42.4
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.7e-11 74.7 314 32.8
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 2.2e-11 74.3 246 35.4
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 5.5e-10 69.7 250 31.6
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 5.5e-10 69.7 314 32.5
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 4.6e-09 66.6 328 29.3
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 1.4e-08 65.1 280 31.8
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 8.8e-08 62.4 150 41.3
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.0e-07 61.2 117 46.2
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 3.7e-06 57.0 130 40.8
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 3.7e-06 57.0 222 32.9


User provided reference genes

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