Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb224900 Zea mays HOM05D004512 ORTHO05D005355 5.7e-58 227.3 105 100.0
Zm00001eb024750 Zea mays HOM05D004512 ORTHO05D005355 9.0e-56 219.9 105 96.2
HPP92_020802 Vanilla planifolia HOM05D004512 ORTHO05D005355 7.2e-45 183.7 99 82.8
ATR1125G038 Amborella trichopoda HOM05D004512 ORTHO05D005355 6.7e-43 177.2 95 82.1
AUR62025859 Chenopodium quinoa HOM05D004512 ORTHO05D005355 1.5e-42 176.0 107 78.5
TAR374G1478 Trochodendron aralioides HOM05D004512 ORTHO05D005355 3.3e-42 174.9 98 79.6
PSO782G2824 Papaver somniferum HOM05D004512 ORTHO05D005355 9.7e-42 173.3 98 76.5
AUR62029861 Chenopodium quinoa HOM05D004512 ORTHO05D005355 1.7e-41 172.6 107 77.6
Hund02392 Selenicereus undatus HOM05D004512 ORTHO05D005355 1.7e-41 172.6 105 74.3
Lalb_Chr22g0353061 Lupinus albus HOM05D004512 ORTHO05D005355 2.8e-41 171.8 104 75.0
Rhsim12G0143400 Rhododendron simsii HOM05D004512 ORTHO05D005355 6.3e-41 170.6 104 73.1
TAR371G0608 Trochodendron aralioides HOM05D004512 ORTHO05D005355 6.3e-41 170.6 95 80.0
vmacro12793 Vaccinium macrocarpon HOM05D004512 ORTHO05D005355 6.3e-41 170.6 106 73.6
Prupe.5G221100 Prunus persica HOM05D004512 ORTHO05D005355 8.2e-41 170.2 104 76.0
QL10p025263 Quercus lobata HOM05D004512 ORTHO05D005355 8.2e-41 170.2 104 73.1
TPR.G27937 Trifolium pratense HOM05D004512 ORTHO05D005355 8.2e-41 170.2 103 75.7
Sabra12G0040400 Salix brachista HOM05D004512 ORTHO05D005355 1.1e-40 169.9 102 72.5
Medtr6g084520 Medicago truncatula HOM05D004512 ORTHO05D005355 1.4e-40 169.5 93 79.6
CiPaw.15G130400 Carya illinoinensis HOM05D004512 ORTHO05D005355 2.4e-40 168.7 98 75.5
MELO3C002086.2 Cucumis melo HOM05D004512 ORTHO05D005355 2.4e-40 168.7 98 75.5
CsaV3_1G006620 Cucumis sativus L. HOM05D004512 ORTHO05D005355 2.4e-40 168.7 98 75.5
Hma1.2p1_0653F.1_g196320 Hydrangea macrophylla HOM05D004512 ORTHO05D005355 2.4e-40 168.7 105 73.3
Potri.012G056900 Populus trichocarpa HOM05D004512 ORTHO05D005355 2.4e-40 168.7 102 73.5
Ca_25495_v3 Cicer arietinum L. HOM05D004512 ORTHO05D005355 3.1e-40 168.3 96 78.1
VMungo0464G1721 Vigna mungo HOM05D004512 ORTHO05D005355 3.1e-40 168.3 96 77.1
CiPaw.16G085900 Carya illinoinensis HOM05D004512 ORTHO05D005355 4.1e-40 167.9 98 74.5
CDE12G0498 Ceratophyllum demersum HOM05D004512 ORTHO05D005355 4.1e-40 167.9 98 77.6
DCAR_011353 Daucus carota HOM05D004512 ORTHO05D005355 4.1e-40 167.9 98 76.5
Lsat_1_v5_gn_8_144301 Lactuca sativa HOM05D004512 ORTHO05D005355 5.3e-40 167.5 99 76.8
Phvul.004G157200 Phaseolus vulgaris HOM05D004512 ORTHO05D005355 5.3e-40 167.5 96 77.1
PGR142G1335 Punica granatum HOM05D004512 ORTHO05D005355 5.3e-40 167.5 104 74.0
Sed0004773 Sechium edule HOM05D004512 ORTHO05D005355 5.3e-40 167.5 98 76.5
CSS0004107 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 6.9e-40 167.2 98 76.5
Cfa019782 Carpinus fangiana HOM05D004512 ORTHO05D005355 6.9e-40 167.2 106 73.6
Haze_18669 Corylus avellana HOM05D004512 ORTHO05D005355 6.9e-40 167.2 106 73.6
Glyma.09G184500 Glycine max HOM05D004512 ORTHO05D005355 6.9e-40 167.2 96 76.0
Manes.05G137500 Manihot esculenta HOM05D004512 ORTHO05D005355 6.9e-40 167.2 96 75.0
PGSC0003DMG400023110 Solanum tuberosum HOM05D004512 ORTHO05D005355 6.9e-40 167.2 98 77.6
DCAR_015141 Daucus carota HOM05D004512 ORTHO05D005355 9.1e-40 166.8 102 73.5
Lalb_Chr24g0397761 Lupinus albus HOM05D004512 ORTHO05D005355 9.1e-40 166.8 104 74.0
Aqoxy3G00301 Aquilegia oxysepala HOM05D004512 ORTHO05D005355 1.2e-39 166.4 99 74.7
Cc04_g07140 Coffea canephora HOM05D004512 ORTHO05D005355 1.2e-39 166.4 98 75.5
MD06G1215900 Malus domestica HOM05D004512 ORTHO05D005355 1.2e-39 166.4 95 77.9
MD14G1226500 Malus domestica HOM05D004512 ORTHO05D005355 1.2e-39 166.4 95 77.9
Nitab4.5_0000208g0260 Nicotiana tabacum HOM05D004512 ORTHO05D005355 1.2e-39 166.4 98 76.5
ClCG00G005470 Citrullus lanatus HOM05D004512 ORTHO05D005355 1.5e-39 166.0 102 71.6
Nitab4.5_0006638g0020 Nicotiana tabacum HOM05D004512 ORTHO05D005355 1.5e-39 166.0 98 75.5
Psat1g037680 Pisum sativum HOM05D004512 ORTHO05D005355 1.5e-39 166.0 94 77.7
Sopen12g018390 Solanum pennellii HOM05D004512 ORTHO05D005355 1.5e-39 166.0 98 75.5
Glyma.07G091500 Glycine max HOM05D004512 ORTHO05D005355 2.6e-39 165.2 93 77.4
Potri.015G054700 Populus trichocarpa HOM05D004512 ORTHO05D005355 2.6e-39 165.2 102 70.6
Manes.01G011800 Manihot esculenta HOM05D004512 ORTHO05D005355 3.4e-39 164.9 99 73.7
Peaxi162Scf00634g00116 Petunia axillaris HOM05D004512 ORTHO05D005355 3.4e-39 164.9 98 74.5
Thhalv10011884m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 4.5e-39 164.5 104 70.2
RcHm_v2.0_Chr7g0185431 Rosa chinensis HOM05D004512 ORTHO05D005355 4.5e-39 164.5 102 71.6
THA.LOC104821841 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 4.5e-39 164.5 104 70.2
arahy.Tifrunner.gnm1.ann1.HI5GUI Arachis hypogaea HOM05D004512 ORTHO05D005355 5.9e-39 164.1 93 76.3
arahy.Tifrunner.gnm1.ann1.K20T5Q Arachis hypogaea HOM05D004512 ORTHO05D005355 5.9e-39 164.1 93 76.3
EL10Ac5g11436 Beta vulgaris HOM05D004512 ORTHO05D005355 5.9e-39 164.1 99 76.8
HanXRQChr08g0226081 Helianthus annuus HOM05D004512 ORTHO05D005355 5.9e-39 164.1 99 73.7
Sc12g0007720 Simmondsia chinensis HOM05D004512 ORTHO05D005355 5.9e-39 164.1 93 76.3
Atru.chr9.839 Acer truncatum HOM05D004512 ORTHO05D005355 7.7e-39 163.7 96 74.0
Aa31LG10G4840 Aethionema arabicum HOM05D004512 ORTHO05D005355 7.7e-39 163.7 106 68.9
AT1G49140 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 7.7e-39 163.7 102 68.6
Carub.0001s3830 Capsella rubella HOM05D004512 ORTHO05D005355 7.7e-39 163.7 102 68.6
ClCG04G011140 Citrullus lanatus HOM05D004512 ORTHO05D005355 7.7e-39 163.7 95 74.7
ECA233G5146 Erigeron canadensis HOM05D004512 ORTHO05D005355 7.7e-39 163.7 105 71.4
Eucgr.K02221 Eucalyptus grandis HOM05D004512 ORTHO05D005355 7.7e-39 163.7 96 75.0
AL1G56000 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 1.0e-38 163.3 102 68.6
CSS0044395 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 1.0e-38 163.3 95 76.8
Lj2g0019547 Lotus japonicus HOM05D004512 ORTHO05D005355 1.0e-38 163.3 96 75.0
THA.LOC104820396 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 1.0e-38 163.3 104 69.2
Sp1g36030 Schrenkiella parvula HOM05D004512 ORTHO05D005355 1.7e-38 162.5 104 68.3
Sed0021676 Sechium edule HOM05D004512 ORTHO05D005355 1.7e-38 162.5 95 74.7
CANSAT80G1137 Cannabis sativa HOM05D004512 ORTHO05D005355 2.2e-38 162.2 104 69.2
CAN.G121.2 Capsicum annuum HOM05D004512 ORTHO05D005355 2.2e-38 162.2 95 75.8
Cpa.g.sc3.515 Carica papaya HOM05D004512 ORTHO05D005355 2.2e-38 162.2 96 71.9
CAN.G790.56 Capsicum annuum HOM05D004512 ORTHO05D005355 2.9e-38 161.8 95 74.7
CANSAT80G2616 Cannabis sativa HOM05D004512 ORTHO05D005355 5.0e-38 161.0 98 72.4
Ciclev10022984m.g Citrus clementina HOM05D004512 ORTHO05D005355 5.0e-38 161.0 96 76.0
AT3G18410 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 6.5e-38 160.6 104 68.3
CARHR039120 Cardamine hirsuta HOM05D004512 ORTHO05D005355 6.5e-38 160.6 104 68.3
AL3G31700 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 1.1e-37 159.8 104 68.3
BraA01t03675Z Brassica rapa HOM05D004512 ORTHO05D005355 1.1e-37 159.8 104 68.3
CARHR093770 Cardamine hirsuta HOM05D004512 ORTHO05D005355 1.1e-37 159.8 104 68.3
Gohir.A08G094600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.1e-37 159.8 96 71.9
Oeu046994.1 Olea europaea HOM05D004512 ORTHO05D005355 1.1e-37 159.8 105 71.4
MSTRG.22945 Avicennia marina HOM05D004512 ORTHO05D005355 1.4e-37 159.5 103 70.9
BcaB04g20765 Brassica carinata HOM05D004512 ORTHO05D005355 1.4e-37 159.5 104 68.3
BcaC09g48802 Brassica carinata HOM05D004512 ORTHO05D005355 1.4e-37 159.5 104 68.3
C01p45770 Brassica napus HOM05D004512 ORTHO05D005355 1.4e-37 159.5 104 68.3
BolC1t04540H Brassica oleracea HOM05D004512 ORTHO05D005355 1.4e-37 159.5 104 68.3
Carub.0003s1819 Capsella rubella HOM05D004512 ORTHO05D005355 1.4e-37 159.5 104 67.3
A03p40660 Brassica napus HOM05D004512 ORTHO05D005355 1.9e-37 159.1 104 68.3
BraA03t13222Z Brassica rapa HOM05D004512 ORTHO05D005355 1.9e-37 159.1 104 68.3
Gohir.A09G047600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.9e-37 159.1 96 71.9
Gohir.D09G048700 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.9e-37 159.1 96 71.9
Solyc12g036790.2 Solanum lycopersicum HOM05D004512 ORTHO05D005355 1.9e-37 159.1 95 74.7
Duzib068G0917 Durio zibethinus HOM05D004512 ORTHO05D005355 2.5e-37 158.7 91 75.8
Duzib205G0602 Durio zibethinus HOM05D004512 ORTHO05D005355 2.5e-37 158.7 99 71.7
Duzib205G1322 Durio zibethinus HOM05D004512 ORTHO05D005355 2.5e-37 158.7 99 71.7
FvH4_5g12140 Fragaria vesca HOM05D004512 ORTHO05D005355 2.5e-37 158.7 102 69.6
FAN04G1546 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.5e-37 158.7 102 69.6
FAN08G0397 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.5e-37 158.7 102 69.6
FAN13G2727 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.5e-37 158.7 102 69.6
FAN18G2044 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.5e-37 158.7 102 69.6
Thhalv10022379m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 3.2e-37 158.3 96 69.8
Thecc.03G034700 Theobroma cacao HOM05D004512 ORTHO05D005355 3.2e-37 158.3 96 71.9
BcaC01g03699 Brassica carinata HOM05D004512 ORTHO05D005355 4.2e-37 157.9 104 67.3
BolC3t17241H Brassica oleracea HOM05D004512 ORTHO05D005355 4.2e-37 157.9 104 67.3
Aa31LG8G5240 Aethionema arabicum HOM05D004512 ORTHO05D005355 5.5e-37 157.5 104 67.3
BcaB04g18985 Brassica carinata HOM05D004512 ORTHO05D005355 1.6e-36 156.0 104 66.3
A05p31210 Brassica napus HOM05D004512 ORTHO05D005355 1.6e-36 156.0 104 67.3
BraA05t21962Z Brassica rapa HOM05D004512 ORTHO05D005355 1.6e-36 156.0 104 67.3
Gorai.006G061400 Gossypium raimondii HOM05D004512 ORTHO05D005355 2.1e-36 155.6 93 72.0
BcaC05g28630 Brassica carinata HOM05D004512 ORTHO05D005355 2.7e-36 155.2 104 67.3
C05p47340 Brassica napus HOM05D004512 ORTHO05D005355 2.7e-36 155.2 104 67.3
BolC5t33461H Brassica oleracea HOM05D004512 ORTHO05D005355 2.7e-36 155.2 104 67.3
Gohir.D08G105800 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.7e-36 155.2 96 70.8
Gorai.004G113100 Gossypium raimondii HOM05D004512 ORTHO05D005355 2.7e-36 155.2 96 70.8
Migut.I00347 Erythranthe guttata HOM05D004512 ORTHO05D005355 3.6e-36 154.8 102 68.6
Sp3g16520 Schrenkiella parvula HOM05D004512 ORTHO05D005355 3.6e-36 154.8 104 67.3
A01p35940 Brassica napus HOM05D004512 ORTHO05D005355 4.7e-36 154.5 93 69.9
unitig_26.g9674 Utricularia gibba HOM05D004512 ORTHO05D005355 6.1e-36 154.1 86 79.1
SalBow5G1005 Salvia bowleyana HOM05D004512 ORTHO05D005355 7.9e-36 153.7 103 67.0
BcaB06g25886 Brassica carinata HOM05D004512 ORTHO05D005355 1.0e-35 153.3 104 66.3
FAN18G1297 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.0e-35 153.3 95 71.6
C03p49450 Brassica napus HOM05D004512 ORTHO05D005355 1.8e-35 152.5 93 68.8
SGA_v2.0_scaffold19G08815 Striga asiatica HOM05D004512 ORTHO05D005355 8.8e-35 150.2 86 77.9
TWI81G1036 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 8.8e-35 150.2 98 67.3
unitig_749.g13425 Utricularia gibba HOM05D004512 ORTHO05D005355 8.8e-35 150.2 86 77.9
SGA_v2.0_scaffold25G10991 Striga asiatica HOM05D004512 ORTHO05D005355 2.0e-34 149.1 86 76.7
TWI60G0557 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 4.1e-32 141.4 96 65.6
Nitab4.5_0007985g0060 Nicotiana tabacum HOM05D004512 ORTHO05D005355 3.5e-31 138.3 81 72.8
HanXRQChr16g0517341 Helianthus annuus HOM05D004512 ORTHO05D005355 8.5e-30 133.7 84 71.4
AagrBONN_evm.TU.Sc2ySwM_117.17 Anthoceros agrestis HOM05D004512 ORTHO05D005355 7.2e-29 130.6 89 64.0
Nn3g17841 Nelumbo nucifera HOM05D004512 ORTHO05D005355 7.2e-29 130.6 67 85.1
AagrBONN_evm.TU.Sc2ySwM_228.463 Anthoceros agrestis HOM05D004512 ORTHO05D005355 1.2e-28 129.8 89 64.0
COL.COLO4_05967 Corchorus olitorius HOM05D004512 ORTHO05D005355 1.6e-28 129.4 78 76.9
Os10g0576000 Oryza sativa ssp. japonica HOM05D004512 ORTHO05D005355 4.0e-27 124.8 59 89.8
Mapoly0004s0055 Marchantia polymorpha HOM05D004512 ORTHO05D005355 2.6e-26 122.1 84 65.5
Pp3c9_26150 Physcomitrium patens HOM05D004512 ORTHO05D005355 2.2e-25 119.0 88 59.1
SMO169G0039 Selaginella moellendorffii HOM05D004512 ORTHO05D005355 2.7e-23 112.1 87 55.2
MD14G1197200 Malus domestica HOM05D004512 ORTHO05D005355 1.3e-22 109.8 71 73.2
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 1.5e-21 106.3 86 57.0
MD15G1306200 Malus domestica HOM05D004512 ORTHO05D005355 7.2e-21 104.0 71 67.6
CAN.G519.12 Capsicum annuum HOM05D004512 ORTHO05D005355 9.4e-21 103.6 71 64.8
CAN.G133.16 Capsicum annuum HOM05D004512 ORTHO05D005355 3.6e-20 101.7 68 69.1
Prupe.2G045100 Prunus persica HOM05D004512 ORTHO05D005355 1.4e-19 99.8 66 69.7
SEGI_01620 Sequoiadendron giganteum HOM05D004512 ORTHO05D005355 9.8e-18 93.6 53 81.1
MCO12G018 Micromonas commoda HOM05D004512 ORTHO05D005355 1.7e-17 92.8 71 54.9
Prupe.1G218000 Prunus persica HOM05D004512 ORTHO05D005355 4.1e-16 88.2 96 49.0
BcaB02g11300 Brassica carinata HOM05D004512 ORTHO05D005355 7.7e-15 84.0 70 57.1
PRCOL_00001312 Prasinoderma coloniale HOM05D004512 ORTHO05D005355 1.2e-10 70.1 94 39.4
Actinidia35087 Actinidia chinensis HOM05D004512 ORTHO05D005355 4.1e-08 61.6 36 77.8
Duzib084G0409 Durio zibethinus HOM05D004512 ORTHO05D005355 7.0e-08 60.8 51 52.9
Dinv09796 Davidia involucrata HOM05D004512 ORTHO05D005355 1.3e-06 56.6 36 72.2
Nitab4.5_0001194g0030 Nicotiana tabacum HOM05D004512 ORTHO05D005355 1.3e-06 56.6 39 66.7


User provided reference genes

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