Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 7.3e-127 457.2 227 100.0
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 4.3e-79 298.5 230 70.0
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 3.1e-61 239.2 240 56.2
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 1.6e-57 226.9 266 50.0
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 1.8e-56 223.4 229 53.7
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 4.3e-55 218.8 233 52.4
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 9.7e-55 217.6 237 52.3
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 3.7e-54 215.7 230 53.5
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 6.9e-53 211.5 236 49.6
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 2.6e-52 209.5 230 51.7
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 5.9e-52 208.4 237 50.6
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 2.2e-51 206.5 230 50.4
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 2.2e-51 206.5 235 51.1
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 2.9e-51 206.1 235 49.4
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 2.9e-51 206.1 218 50.9
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 5.0e-51 205.3 227 52.0
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 6.5e-51 204.9 235 50.2
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 1.1e-50 204.1 235 48.5
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 1.1e-50 204.1 234 49.1
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 1.4e-50 203.8 235 49.8
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 1.4e-50 203.8 239 49.4
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 1.9e-50 203.4 229 49.8
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 3.2e-50 202.6 232 50.4
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 5.5e-50 201.8 234 52.6
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 5.5e-50 201.8 230 50.4
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 7.2e-50 201.4 238 49.6
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 7.2e-50 201.4 230 49.6
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 9.4e-50 201.1 232 47.4
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 9.4e-50 201.1 227 50.2
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.6e-49 200.3 215 53.0
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 3.6e-49 199.1 242 47.5
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 4.7e-49 198.7 230 52.6
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 7.9e-49 198.0 235 47.7
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 7.9e-49 198.0 233 49.8
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 1.0e-48 197.6 232 50.9
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 1.4e-48 197.2 218 50.9
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 1.8e-48 196.8 234 48.3
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 1.8e-48 196.8 238 47.5
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 2.3e-48 196.4 222 46.4
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 3.0e-48 196.1 232 50.4
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 3.0e-48 196.1 224 48.2
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 3.0e-48 196.1 232 50.4
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 3.9e-48 195.7 236 50.0
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 3.9e-48 195.7 231 46.8
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 8.8e-48 194.5 243 44.9
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 1.5e-47 193.7 239 50.2
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 1.5e-47 193.7 223 48.9
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 1.5e-47 193.7 235 49.4
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 2.6e-47 193.0 226 48.2
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 2.6e-47 193.0 226 48.2
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 4.4e-47 192.2 231 48.1
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 4.4e-47 192.2 233 44.6
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 5.7e-47 191.8 231 47.6
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 7.4e-47 191.4 235 46.0
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 9.7e-47 191.0 233 44.2
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 1.7e-46 190.3 222 47.7
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 1.7e-46 190.3 241 49.0
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 2.2e-46 189.9 232 47.0
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 2.8e-46 189.5 227 50.2
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 2.8e-46 189.5 229 47.6
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 2.8e-46 189.5 237 45.6
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 4.8e-46 188.7 234 44.9
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 4.8e-46 188.7 234 47.9
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 6.3e-46 188.3 216 48.6
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 2.4e-45 186.4 229 46.3
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 2.4e-45 186.4 232 44.4
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 3.1e-45 186.0 213 46.0
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 3.1e-45 186.0 216 47.7
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 4.1e-45 185.7 237 46.8
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 7.0e-45 184.9 224 47.8
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 7.0e-45 184.9 228 46.1
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 9.1e-45 184.5 233 48.5
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 1.2e-44 184.1 228 46.5
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 2.6e-44 183.0 226 46.9
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 4.5e-44 182.2 229 46.3
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 4.5e-44 182.2 222 45.5
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 5.9e-44 181.8 224 44.6
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 1.3e-43 180.6 223 48.0
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 1.3e-43 180.6 234 44.0
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 1.7e-43 180.3 227 45.4
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 2.2e-43 179.9 237 44.3
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 2.9e-43 179.5 217 47.5
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 3.8e-43 179.1 230 46.5
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 6.5e-43 178.3 235 46.0
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 8.5e-43 177.9 233 45.1
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 8.5e-43 177.9 183 53.6
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 1.1e-42 177.6 234 44.0
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 4.2e-42 175.6 222 47.7
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 5.5e-42 175.3 235 45.5
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 1.2e-41 174.1 240 45.0
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 2.7e-41 172.9 234 42.7
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 6.1e-41 171.8 231 44.2
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 8.0e-41 171.4 236 42.8
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 4.0e-40 169.1 225 46.2
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 5.2e-40 168.7 234 44.0
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 3.3e-39 166.0 242 43.4
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 3.3e-39 166.0 241 41.9
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 7.5e-39 164.9 252 41.7
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 6.3e-38 161.8 273 37.0
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 8.2e-38 161.4 236 44.1
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 1.1e-37 161.0 215 42.3
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 1.4e-37 160.6 229 41.5
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 9.1e-37 157.9 218 38.5
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 2.0e-36 156.8 224 39.7
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 7.7e-36 154.8 219 43.8
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 6.5e-35 151.8 164 51.2
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 8.5e-35 151.4 222 39.6
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 1.1e-34 151.0 281 36.7
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 6.1e-33 145.2 229 37.6
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 4.4e-31 139.0 227 37.9
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 2.2e-30 136.7 224 42.4
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 8.3e-30 134.8 167 47.9
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 2.4e-29 133.3 234 37.2
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 5.0e-27 125.6 159 44.0
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 4.2e-26 122.5 165 46.7
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 3.6e-25 119.4 139 47.5
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 1.4e-24 117.5 140 47.9
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 5.0e-19 99.0 100 49.0
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 4.3e-18 95.9 216 36.6
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 5.6e-18 95.5 219 32.4
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 7.2e-18 95.1 125 40.8
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 3.6e-17 92.8 191 31.9
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 5.2e-16 89.0 91 46.2
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 8.9e-16 88.2 101 45.5
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 1.2e-15 87.8 101 52.5
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 1.5e-15 87.4 132 43.9
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 6.4e-14 82.0 246 29.3
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 4.1e-13 79.3 144 38.2
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 1.2e-12 77.8 235 28.5
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 1.2e-12 77.8 119 40.3
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 6.6e-11 72.0 98 42.9
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 8.0e-09 65.1 84 52.4
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 1.7e-06 57.4 106 37.7


User provided reference genes

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