Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb223890 Zea mays HOM05D006652 ORTHO05D008645 4.9e-202 707.6 360 100.0
Os10g0181600 Oryza sativa ssp. japonica HOM05D006652 ORTHO05D008645 1.7e-170 602.8 335 89.9
Lj8C103T10 Lonicera japonica HOM05D006652 ORTHO05D008645 4.8e-141 505.0 350 72.3
TAR629G0548 Trochodendron aralioides HOM05D006652 ORTHO05D008645 5.9e-139 498.0 321 75.1
GSVIVG01020686001 Vitis vinifera HOM05D006652 ORTHO05D008645 1.7e-138 496.5 345 72.8
Nitab4.5_0000822g0100 Nicotiana tabacum HOM05D006652 ORTHO05D008645 2.9e-138 495.7 321 74.5
vmacro09218 Vaccinium macrocarpon HOM05D006652 ORTHO05D008645 2.9e-138 495.7 321 74.1
Hma1.2p1_0166F.1_g073540 Hydrangea macrophylla HOM05D006652 ORTHO05D008645 3.2e-137 492.3 332 72.0
Aqoxy4G00418 Aquilegia oxysepala HOM05D006652 ORTHO05D008645 7.2e-137 491.1 341 70.4
QL08p041412 Quercus lobata HOM05D006652 ORTHO05D008645 7.2e-137 491.1 345 70.4
CSS0047332 Camellia sinensis var. sinensis HOM05D006652 ORTHO05D008645 2.1e-136 489.6 321 73.5
Nn1g04382 Nelumbo nucifera HOM05D006652 ORTHO05D008645 2.7e-136 489.2 349 69.6
HanXRQChr17g0558041 Helianthus annuus HOM05D006652 ORTHO05D008645 3.6e-136 488.8 343 68.8
Lsat_1_v5_gn_8_140221 Lactuca sativa HOM05D006652 ORTHO05D008645 4.7e-136 488.4 321 72.3
arahy.Tifrunner.gnm1.ann1.KP1SVS Arachis hypogaea HOM05D006652 ORTHO05D008645 8.0e-136 487.6 343 70.6
AUR62038922 Chenopodium quinoa HOM05D006652 ORTHO05D008645 1.4e-135 486.9 319 73.7
Peaxi162Scf00241g00812 Petunia axillaris HOM05D006652 ORTHO05D008645 1.4e-135 486.9 341 70.1
Dinv08786 Davidia involucrata HOM05D006652 ORTHO05D008645 1.8e-135 486.5 361 66.8
CAN.G782.5 Capsicum annuum HOM05D006652 ORTHO05D008645 2.0e-134 483.0 327 71.6
arahy.Tifrunner.gnm1.ann1.5ZDL5Q Arachis hypogaea HOM05D006652 ORTHO05D008645 2.6e-134 482.6 343 69.7
Sabra19G0103300 Salix brachista HOM05D006652 ORTHO05D008645 2.6e-134 482.6 351 68.7
Potri.019G089700 Populus trichocarpa HOM05D006652 ORTHO05D008645 5.7e-134 481.5 342 69.3
Solyc10g008020.3 Solanum lycopersicum HOM05D006652 ORTHO05D008645 5.7e-134 481.5 325 71.4
ECA234G1589 Erigeron canadensis HOM05D006652 ORTHO05D008645 7.4e-134 481.1 321 72.0
CiPaw.03G187000 Carya illinoinensis HOM05D006652 ORTHO05D008645 9.7e-134 480.7 355 68.2
Hund07829 Selenicereus undatus HOM05D006652 ORTHO05D008645 1.7e-133 479.9 319 73.0
Sopen10g003890 Solanum pennellii HOM05D006652 ORTHO05D008645 2.8e-133 479.2 325 71.1
Migut.H02157 Erythranthe guttata HOM05D006652 ORTHO05D008645 3.7e-133 478.8 324 71.3
MSTRG.14312 Avicennia marina HOM05D006652 ORTHO05D008645 4.8e-133 478.4 336 70.5
EL10Ac9g20915 Beta vulgaris HOM05D006652 ORTHO05D008645 6.3e-133 478.0 319 72.4
Medtr4g079750 Medicago truncatula HOM05D006652 ORTHO05D008645 6.3e-133 478.0 319 71.5
Phvul.011G134400 Phaseolus vulgaris HOM05D006652 ORTHO05D008645 1.1e-132 477.2 364 66.2
Sabra19G0100100 Salix brachista HOM05D006652 ORTHO05D008645 1.1e-132 477.2 350 67.7
Lj3g0009013 Lotus japonicus HOM05D006652 ORTHO05D008645 2.4e-132 476.1 359 65.7
Lalb_Chr19g0134921 Lupinus albus HOM05D006652 ORTHO05D008645 2.4e-132 476.1 342 67.8
SalBow7G3656 Salvia bowleyana HOM05D006652 ORTHO05D008645 9.1e-132 474.2 337 68.8
ATR0661G163 Amborella trichopoda HOM05D006652 ORTHO05D008645 1.6e-131 473.4 318 71.7
Glyma.12G122700 Glycine max HOM05D006652 ORTHO05D008645 1.6e-131 473.4 365 64.1
Nitab4.5_0008146g0020 Nicotiana tabacum HOM05D006652 ORTHO05D008645 4.5e-131 471.9 321 71.7
Ca_18890_v3 Cicer arietinum L. HOM05D006652 ORTHO05D008645 5.9e-131 471.5 363 65.0
Glyma.06G283400 Glycine max HOM05D006652 ORTHO05D008645 1.3e-130 470.3 364 64.8
VMungo1127G0176 Vigna mungo HOM05D006652 ORTHO05D008645 6.5e-130 468.0 364 64.8
Thecc.01G148700 Theobroma cacao HOM05D006652 ORTHO05D008645 6.1e-128 461.5 355 66.8
Atru.chr6.2810_Atru.chr6.2811 Acer truncatum HOM05D006652 ORTHO05D008645 8.0e-128 461.1 351 66.1
PGR142G2816 Punica granatum HOM05D006652 ORTHO05D008645 1.0e-127 460.7 346 65.3
unitig_21.g20276 Utricularia gibba HOM05D006652 ORTHO05D008645 1.0e-127 460.7 335 68.1
COL.COLO4_33547 Corchorus olitorius HOM05D006652 ORTHO05D008645 6.8e-127 458.0 341 66.3
Eucgr.K01102 Eucalyptus grandis HOM05D006652 ORTHO05D008645 6.8e-127 458.0 360 63.3
Glyma.06G283600 Glycine max HOM05D006652 ORTHO05D008645 5.7e-126 454.9 365 61.9
Gohir.A10G153800 Gossypium hirsutum HOM05D006652 ORTHO05D008645 1.7e-125 453.4 353 64.6
Gohir.D10G112300 Gossypium hirsutum HOM05D006652 ORTHO05D008645 2.2e-125 453.0 335 66.3
Gorai.011G124200 Gossypium raimondii HOM05D006652 ORTHO05D008645 2.2e-125 453.0 335 66.3
Ciclev10015734m.g Citrus clementina HOM05D006652 ORTHO05D008645 6.3e-125 451.4 340 66.8
CsaV3_6G018460 Cucumis sativus L. HOM05D006652 ORTHO05D008645 2.0e-123 446.4 346 63.3
MBI11_g14404_MAGBIO Magnolia biondii HOM05D006652 ORTHO05D008645 4.5e-123 445.3 323 69.0
PGSC0003DMG400010544 Solanum tuberosum HOM05D006652 ORTHO05D008645 1.7e-122 443.4 388 59.5
SGA_v2.0_scaffold109G31132 Striga asiatica HOM05D006652 ORTHO05D008645 4.2e-121 438.7 435 54.7
Actinidia39342 Actinidia chinensis HOM05D006652 ORTHO05D008645 3.4e-118 429.1 279 75.3
Duzib187G0644 Durio zibethinus HOM05D006652 ORTHO05D008645 3.4e-118 429.1 349 61.3
Rhsim04G0074100 Rhododendron simsii HOM05D006652 ORTHO05D008645 5.2e-111 405.2 329 62.6
TWI59G0297 Tripterygium wilfordii HOM05D006652 ORTHO05D008645 1.5e-110 403.7 285 68.4
AUR62038997 Chenopodium quinoa HOM05D006652 ORTHO05D008645 2.0e-110 403.3 333 64.0
Manes.13G137800 Manihot esculenta HOM05D006652 ORTHO05D008645 1.8e-108 396.7 291 66.3
Cc05_g08190 Coffea canephora HOM05D006652 ORTHO05D008645 5.4e-108 395.2 272 70.2
CDE11G0921 Ceratophyllum demersum HOM05D006652 ORTHO05D008645 1.6e-107 393.7 267 72.3
Cc05_g08160 Coffea canephora HOM05D006652 ORTHO05D008645 1.6e-107 393.7 272 70.2
Pp3c3_7460 Physcomitrium patens HOM05D006652 ORTHO05D008645 3.5e-107 392.5 322 59.9
Zm00001eb307930 Zea mays HOM05D006652 ORTHO05D008645 3.3e-105 386.0 203 92.1
SMO334G0043 Selaginella moellendorffii HOM05D006652 ORTHO05D008645 1.2e-104 384.0 360 55.8
Sed0018596 Sechium edule HOM05D006652 ORTHO05D008645 4.7e-104 382.1 276 65.6
Psat7g166280 Pisum sativum HOM05D006652 ORTHO05D008645 1.8e-103 380.2 300 64.3
Glyma.06G283500 Glycine max HOM05D006652 ORTHO05D008645 7.5e-102 374.8 289 64.4
Mapoly0061s0036 Marchantia polymorpha HOM05D006652 ORTHO05D008645 3.9e-98 362.5 311 54.3
Zm00001eb202810 Zea mays HOM05D006652 ORTHO05D008645 1.3e-90 337.4 256 73.0
Zm00001eb155780 Zea mays HOM05D006652 ORTHO05D008645 4.7e-88 328.9 249 71.9
DCAR_013062 Daucus carota HOM05D006652 ORTHO05D008645 1.5e-86 323.9 319 56.4
MBI11_g19676_MAGBIO Magnolia biondii HOM05D006652 ORTHO05D008645 1.5e-86 323.9 276 59.1
Zm00001eb127120 Zea mays HOM05D006652 ORTHO05D008645 3.4e-86 322.8 264 67.8
ClCG02G017930 Citrullus lanatus HOM05D006652 ORTHO05D008645 7.3e-81 305.1 353 50.7
PRCOL_00002204 Prasinoderma coloniale HOM05D006652 ORTHO05D008645 9.9e-78 294.7 324 49.4
MCO11G400 Micromonas commoda HOM05D006652 ORTHO05D008645 3.2e-76 289.7 352 44.6
CBR_g20425 Chara braunii HOM05D006652 ORTHO05D008645 5.4e-76 288.9 324 45.4
Cc00_g35820 Coffea canephora HOM05D006652 ORTHO05D008645 1.7e-74 283.9 184 72.3
AagrBONN_evm.TU.Sc2ySwM_228.444 Anthoceros agrestis HOM05D006652 ORTHO05D008645 2.9e-69 266.5 233 58.8
TPR.G21861 Trifolium pratense HOM05D006652 ORTHO05D008645 2.1e-67 260.4 180 66.7
MELO3C019759.2 Cucumis melo HOM05D006652 ORTHO05D008645 1.1e-65 254.6 207 61.8
Ca_18889_v3 Cicer arietinum L. HOM05D006652 ORTHO05D008645 1.6e-64 250.8 216 59.3
CBR_g20426 Chara braunii HOM05D006652 ORTHO05D008645 4.0e-63 246.1 407 36.9
PGR142G0648 Punica granatum HOM05D006652 ORTHO05D008645 5.3e-63 245.7 211 58.8
Mapoly0285s0004 Marchantia polymorpha HOM05D006652 ORTHO05D008645 2.2e-61 240.4 219 53.9
Zm00001eb272210 Zea mays HOM05D006652 ORTHO05D008645 5.5e-60 235.7 202 65.8
Cre03.g200350 Chlamydomonas reinhardtii HOM05D006652 ORTHO05D008645 4.6e-59 232.6 356 38.5
SMO118G0546 Selaginella moellendorffii HOM05D006652 ORTHO05D008645 2.2e-53 213.8 305 39.3
Pp3c17_23540 Physcomitrium patens HOM05D006652 ORTHO05D008645 2.5e-49 200.3 302 35.8
Mapoly0050s0024 Marchantia polymorpha HOM05D006652 ORTHO05D008645 4.1e-47 193.0 317 35.6
Cre06.g259401 Chlamydomonas reinhardtii HOM05D006652 ORTHO05D008645 2.0e-46 190.7 307 36.8
SEGI_35274 Sequoiadendron giganteum HOM05D006652 ORTHO05D008645 1.3e-45 188.0 332 35.2
CBR_g34298 Chara braunii HOM05D006652 ORTHO05D008645 3.9e-42 176.4 317 34.7
arahy.Tifrunner.gnm1.ann1.MYHL2J Arachis hypogaea HOM05D006652 ORTHO05D008645 5.1e-42 176.0 141 63.1
MCO08G076 Micromonas commoda HOM05D006652 ORTHO05D008645 2.5e-41 173.7 319 34.8
Haze_13351 Corylus avellana HOM05D006652 ORTHO05D008645 3.3e-41 173.3 120 70.0
PRCOL_00006996 Prasinoderma coloniale HOM05D006652 ORTHO05D008645 1.2e-38 164.9 311 35.0
Haze_13350 Corylus avellana HOM05D006652 ORTHO05D008645 1.5e-38 164.5 93 81.7
ECA234G0151 Erigeron canadensis HOM05D006652 ORTHO05D008645 1.0e-34 151.8 102 67.6
Ca_18891_v3 Cicer arietinum L. HOM05D006652 ORTHO05D008645 3.9e-34 149.8 141 55.3
AUR62024835 Chenopodium quinoa HOM05D006652 ORTHO05D008645 1.1e-33 148.3 138 56.5
TPR.G21859 Trifolium pratense HOM05D006652 ORTHO05D008645 5.3e-31 139.4 138 52.2
AagrBONN_evm.TU.Sc2ySwM_117.2543 Anthoceros agrestis HOM05D006652 ORTHO05D008645 2.1e-27 127.5 172 41.3
TPR.G21704 Trifolium pratense HOM05D006652 ORTHO05D008645 1.4e-26 124.8 127 52.0
Zm00001eb048070 Zea mays HOM05D001272 ORTHO05D001099 5.0e-21 106.3 57 91.2
Glyma.12G122501 Glycine max HOM05D006652 ORTHO05D008645 1.6e-19 101.3 86 54.7
Cc05_g08180 Coffea canephora HOM05D006652 ORTHO05D008645 1.0e-18 98.6 56 83.9
Cc05_g08150 Coffea canephora HOM05D006652 ORTHO05D008645 5.2e-18 96.3 56 82.1
PRCOL_00001996 Prasinoderma coloniale HOM05D006652 ORTHO05D028803 2.9e-13 80.5 243 27.2
MCO09G339 Micromonas commoda HOM05D006652 ORTHO05D268879 1.6e-11 74.7 234 24.4
MCO15G420 Micromonas commoda HOM05D006652 ORTHO05D028803 1.0e-10 72.0 230 24.8
PRCOL_00002129 Prasinoderma coloniale HOM05D006652 ORTHO05D008645 1.4e-10 71.6 227 26.9
Haze_13352 Corylus avellana HOM05D006652 ORTHO05D008645 9.8e-09 65.5 42 69.0
Cre06.g286350 Chlamydomonas reinhardtii HOM05D006652 ORTHO05D028803 2.2e-08 64.3 193 25.9
Sopen12g009240 Solanum pennellii HOM05D005748 ORTHO05D007123 2.8e-08 63.9 134 33.6
Ah.08g222620 Amaranthus hybridus HOM05D006652 ORTHO05D008645 1.1e-07 62.0 52 55.8
PGSC0003DMG400020380 Solanum tuberosum HOM05D005748 ORTHO05D007123 1.1e-07 62.0 134 33.6
Ah.07g202300 Amaranthus hybridus HOM05D006652 ORTHO05D008645 2.4e-07 60.8 42 64.3
CAN.G8.38 Capsicum annuum HOM05D005748 ORTHO05D007123 3.1e-07 60.5 133 31.6
PRCOL_00002005 Prasinoderma coloniale HOM05D003793 ORTHO05D004471 1.6e-06 58.2 106 34.0
Cre06.g286300 Chlamydomonas reinhardtii HOM05D006652 ORTHO05D028803 2.0e-06 57.8 246 24.0


User provided reference genes

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