Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 0.0e+00 1374.8 674 100.0
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 0.0e+00 1162.9 675 83.3
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 4.4e-196 688.7 687 51.5
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 1.4e-194 683.7 707 51.1
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 1.9e-194 683.3 686 51.5
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 9.8e-188 661.0 681 49.9
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 2.4e-186 656.4 690 50.3
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 5.4e-186 655.2 679 49.9
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 1.0e-184 651.0 695 49.1
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 8.1e-182 641.3 694 48.3
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 3.1e-181 639.4 730 47.9
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 4.0e-181 639.0 696 48.7
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 3.4e-180 636.0 697 47.1
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 9.9e-180 634.4 650 50.2
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 1.7e-179 633.6 698 48.6
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 1.9e-178 630.2 687 48.8
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 1.9e-178 630.2 693 48.1
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 5.4e-178 628.6 694 49.3
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 5.4e-178 628.6 695 47.1
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 7.1e-178 628.2 689 48.5
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 7.1e-178 628.2 685 48.3
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 6.0e-177 625.2 691 48.5
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 1.1e-175 620.9 691 48.2
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 1.1e-175 620.9 732 46.0
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 4.3e-175 619.0 687 48.2
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 5.6e-175 618.6 690 48.0
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 2.1e-174 616.7 686 48.3
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 6.2e-174 615.1 692 47.3
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 6.2e-174 615.1 679 48.2
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 1.8e-173 613.6 692 47.7
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 5.2e-173 612.1 690 47.5
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 6.8e-173 611.7 700 46.4
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 1.2e-172 610.9 682 47.9
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.0e-172 610.1 682 47.9
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 2.6e-172 609.8 689 47.0
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 4.4e-172 609.0 698 47.4
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 5.8e-172 608.6 687 47.7
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 9.9e-172 607.8 686 48.8
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 2.2e-171 606.7 714 46.1
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 2.9e-171 606.3 683 47.3
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 4.9e-171 605.5 691 47.5
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 1.1e-170 604.4 693 46.8
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 1.9e-170 603.6 722 44.0
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 4.2e-170 602.4 688 46.7
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 5.4e-170 602.1 687 47.3
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 5.4e-170 602.1 690 47.7
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 1.2e-169 600.9 684 44.7
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 2.7e-169 599.7 692 47.3
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 4.6e-169 599.0 698 46.0
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 1.7e-168 597.0 700 46.7
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 2.3e-168 596.7 683 46.4
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 1.1e-167 594.3 703 45.8
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.9e-167 593.6 696 45.3
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 1.9e-167 593.6 683 46.1
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 1.9e-167 593.6 726 45.2
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 2.5e-167 593.2 681 46.3
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 4.3e-167 592.4 692 45.5
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 4.3e-167 592.4 683 45.8
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 1.6e-166 590.5 688 46.1
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 2.8e-166 589.7 603 50.6
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 3.6e-166 589.3 695 45.5
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 8.1e-166 588.2 697 45.3
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.4e-165 587.4 689 44.6
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 1.8e-165 587.0 697 46.2
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 1.8e-165 587.0 700 44.3
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.4e-165 586.6 699 44.2
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 4.0e-165 585.9 706 46.2
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 6.9e-165 585.1 684 46.3
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 1.5e-164 583.9 692 46.1
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.5e-164 583.9 694 46.1
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 2.0e-164 583.6 690 46.4
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 3.4e-164 582.8 688 45.6
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 4.4e-164 582.4 679 43.9
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 5.8e-164 582.0 698 46.1
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 1.9e-162 577.0 689 45.9
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 2.4e-162 576.6 646 46.7
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 9.3e-162 574.7 606 49.0
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 1.2e-161 574.3 692 45.4
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 2.7e-161 573.2 683 44.8
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 2.7e-161 573.2 694 44.8
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 7.8e-161 571.6 682 45.9
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.0e-160 571.2 700 44.0
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 3.9e-160 569.3 685 45.7
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 1.5e-159 567.4 685 45.0
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 4.3e-159 565.8 689 44.1
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 5.6e-159 565.5 691 44.1
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 9.6e-159 564.7 685 44.8
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 1.6e-158 563.9 692 44.9
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.6e-158 563.9 700 43.1
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.8e-158 563.1 679 44.9
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 3.6e-158 562.8 693 44.6
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 4.8e-158 562.4 682 45.3
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 4.8e-158 562.4 710 43.9
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 6.2e-158 562.0 699 43.1
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 8.1e-158 561.6 664 45.2
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 9.0e-157 558.1 690 44.6
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 1.5e-156 557.4 685 44.5
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 4.5e-156 555.8 682 44.9
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 2.9e-155 553.1 685 43.6
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 3.8e-155 552.7 526 54.4
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 4.9e-155 552.4 685 43.5
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 8.4e-155 551.6 685 43.5
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 8.4e-155 551.6 685 43.5
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 1.1e-154 551.2 682 44.3
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 1.1e-154 551.2 685 43.6
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 9.3e-154 548.1 641 46.5
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 6.0e-153 545.4 743 40.9
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 1.0e-152 544.7 681 44.1
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 2.1e-145 520.4 576 48.6
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 3.0e-144 516.5 644 42.9
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 3.4e-140 503.1 594 45.3
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 1.4e-138 497.7 682 40.2
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 3.2e-138 496.5 593 44.5
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 7.4e-135 485.3 695 40.4
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 7.7e-132 475.3 666 40.1
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.5e-127 460.3 547 45.3
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 1.2e-124 451.4 551 45.0
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 9.4e-122 441.8 688 38.5
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 3.0e-120 436.8 506 45.7
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 7.4e-119 432.2 385 56.1
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 4.7e-113 412.9 679 34.6
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 5.2e-112 409.5 339 60.8
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.7e-107 394.4 342 57.9
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 1.2e-105 388.3 578 39.4
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 4.4e-103 379.8 728 34.9
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 2.9e-99 367.1 469 42.2
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 7.0e-93 345.9 448 43.1
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 1.2e-92 345.1 327 53.2
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.0e-88 332.0 696 31.6
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.5e-87 328.2 665 32.5
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 3.7e-86 323.6 561 34.8
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 2.6e-79 300.8 351 43.0
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 3.5e-76 290.4 772 27.7
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 1.7e-75 288.1 507 32.9
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 1.3e-70 271.9 416 38.2
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 4.1e-69 266.9 287 47.4
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 2.8e-57 227.6 323 38.7
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 7.6e-55 219.5 461 31.7
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 2.1e-49 201.4 196 49.5
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 1.5e-47 195.3 326 35.6
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 1.7e-38 165.2 181 49.7
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.1e-37 162.5 176 48.9
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 5.3e-32 143.7 293 31.7
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 1.3e-27 129.0 116 47.4
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 5.0e-22 110.5 107 51.4
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 1.9e-21 108.6 241 29.0
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 6.7e-19 100.1 103 58.3
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 2.0e-10 72.0 62 50.0
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.8e-08 65.5 68 44.1
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 5.3e-08 63.9 36 72.2
CBR_g17143 Chara braunii HOM05D004502 ORTHO05D005579 1.2e-07 62.8 143 28.7
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.7e-06 58.9 134 29.9


User provided reference genes

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