Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb222310 Zea mays HOM05D007543 ORTHO05D009555 2.8e-147 525.4 296 100.0
Os07g0170800 Oryza sativa ssp. japonica HOM05D007543 ORTHO05D009555 2.7e-113 412.5 214 85.5
QL06p022584 Quercus lobata HOM05D007543 ORTHO05D009555 6.0e-81 305.1 208 64.9
Nn1g03077 Nelumbo nucifera HOM05D007543 ORTHO05D009555 1.0e-80 304.3 209 62.7
CiPaw.01G206300 Carya illinoinensis HOM05D007543 ORTHO05D009555 5.1e-80 302.0 208 64.4
TAR362G0720 Trochodendron aralioides HOM05D007543 ORTHO05D009555 5.6e-79 298.5 210 62.9
Hma1.2p1_1076F.1_g254630 Hydrangea macrophylla HOM05D007543 ORTHO05D009555 1.3e-78 297.4 214 61.7
Manes.15G048300 Manihot esculenta HOM05D007543 ORTHO05D009555 2.1e-78 296.6 208 61.5
Actinidia35927 Actinidia chinensis HOM05D007543 ORTHO05D009555 6.2e-78 295.0 206 63.6
Potri.008G175200 Populus trichocarpa HOM05D007543 ORTHO05D009555 8.1e-78 294.7 208 61.1
CiPaw.02G128000 Carya illinoinensis HOM05D007543 ORTHO05D009555 1.4e-77 293.9 206 63.1
Potri.010G060800 Populus trichocarpa HOM05D007543 ORTHO05D009555 1.8e-77 293.5 208 60.6
Duzib151G0611 Durio zibethinus HOM05D007543 ORTHO05D009555 6.9e-77 291.6 206 62.1
ATR0787G197 Amborella trichopoda HOM05D007543 ORTHO05D009555 2.0e-76 290.0 209 61.2
Atru.chr4.1820 Acer truncatum HOM05D007543 ORTHO05D009555 3.4e-76 289.3 206 63.1
Thecc.04G215800 Theobroma cacao HOM05D007543 ORTHO05D009555 3.4e-76 289.3 205 62.9
COL.COLO4_05738 Corchorus olitorius HOM05D007543 ORTHO05D009555 2.2e-75 286.6 210 59.5
SEGI_36435 Sequoiadendron giganteum HOM05D007543 ORTHO05D009555 2.2e-75 286.6 211 60.7
Ciclev10005680m.g Citrus clementina HOM05D007543 ORTHO05D009555 8.4e-75 284.6 210 60.0
PSO764G0201 Papaver somniferum HOM05D007543 ORTHO05D009555 1.9e-74 283.5 210 59.5
DCAR_002284 Daucus carota HOM05D007543 ORTHO05D009555 1.2e-73 280.8 207 59.9
TWI53G0267 Tripterygium wilfordii HOM05D007543 ORTHO05D009555 3.5e-73 279.3 211 60.2
PGSC0003DMG400011574 Solanum tuberosum HOM05D007543 ORTHO05D009555 4.6e-73 278.9 212 57.1
CSS0020488 Camellia sinensis var. sinensis HOM05D007543 ORTHO05D009555 2.3e-72 276.6 197 62.4
CAN.G1588.1 Capsicum annuum HOM05D007543 ORTHO05D009555 8.7e-72 274.6 205 57.6
EL10Ac3g06745 Beta vulgaris HOM05D007543 ORTHO05D009555 9.6e-71 271.2 204 56.4
Ciclev10005675m.g Citrus clementina HOM05D007543 ORTHO05D009555 1.6e-70 270.4 206 58.7
ClCG05G003720 Citrullus lanatus HOM05D007543 ORTHO05D009555 1.1e-69 267.7 205 58.0
Nitab4.5_0000451g0150 Nicotiana tabacum HOM05D007543 ORTHO05D009555 1.1e-69 267.7 224 54.0
Rhsim09G0045000 Rhododendron simsii HOM05D007543 ORTHO05D009555 4.0e-69 265.8 233 53.2
HanXRQChr01g0022581 Helianthus annuus HOM05D007543 ORTHO05D009555 1.2e-68 264.2 209 56.0
CsaV3_3G011440 Cucumis sativus L. HOM05D007543 ORTHO05D009555 2.6e-68 263.1 212 56.6
Nitab4.5_0003136g0030 Nicotiana tabacum HOM05D007543 ORTHO05D009555 3.4e-68 262.7 220 54.1
Sed0003983 Sechium edule HOM05D007543 ORTHO05D009555 7.6e-68 261.5 206 56.3
Sc19g0005790 Simmondsia chinensis HOM05D007543 ORTHO05D009555 8.4e-67 258.1 209 54.1
Lsat_1_v5_gn_1_76300 Lactuca sativa HOM05D007543 ORTHO05D009555 7.1e-66 255.0 201 54.7
Actinidia25090 Actinidia chinensis HOM05D007543 ORTHO05D009555 1.3e-64 250.8 170 64.7
Lsat_1_v5_gn_0_4520 Lactuca sativa HOM05D007543 ORTHO05D009555 1.8e-64 250.4 200 55.0
Sabra08G0133600 Salix brachista HOM05D007543 ORTHO05D009555 2.3e-64 250.0 208 55.8
Lsat_1_v5_gn_0_4560 Lactuca sativa HOM05D007543 ORTHO05D009555 3.7e-62 242.7 203 52.7
vmacro00522 Vaccinium macrocarpon HOM05D007543 ORTHO05D009555 6.3e-62 241.9 231 50.2
Lsat_1_v5_gn_2_41901 Lactuca sativa HOM05D007543 ORTHO05D009555 2.4e-61 240.0 208 51.4
Lsat_1_v5_gn_1_76260 Lactuca sativa HOM05D007543 ORTHO05D009555 6.9e-61 238.4 217 48.4
Haze_11534 Corylus avellana HOM05D007543 ORTHO05D009555 4.5e-60 235.7 250 46.8
Lsat_1_v5_gn_1_76220 Lactuca sativa HOM05D007543 ORTHO05D009555 1.9e-55 220.3 210 47.6
Migut.G00602 Erythranthe guttata HOM05D007543 ORTHO05D009555 9.7e-55 218.0 172 53.5
MELO3C006351.2 Cucumis melo HOM05D007543 ORTHO05D009555 6.9e-53 211.8 205 48.3
Cfa014866 Carpinus fangiana HOM05D007543 ORTHO05D009555 3.4e-52 209.5 123 69.9
AUR62035905 Chenopodium quinoa HOM05D007543 ORTHO05D009555 1.9e-50 203.8 204 47.1
MBI10_g16799_MAGBIO Magnolia biondii HOM05D007543 ORTHO05D009555 4.2e-50 202.6 115 72.2
AUR62035334 Chenopodium quinoa HOM05D007543 ORTHO05D009555 3.6e-49 199.5 124 63.7
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 3.0e-48 196.4 240 38.8
PSO832G0138 Papaver somniferum HOM05D007543 ORTHO05D009555 3.9e-48 196.1 158 55.7
CANSAT78G0099 Cannabis sativa HOM05D007543 ORTHO05D009555 3.7e-46 189.5 128 61.7
SMO142G0023 Selaginella moellendorffii HOM05D007543 ORTHO05D009555 6.3e-46 188.7 222 44.1
Lj6A641T47 Lonicera japonica HOM05D007543 ORTHO05D009555 1.3e-43 181.0 160 51.2
Eucgr.H02864 Eucalyptus grandis HOM05D007543 ORTHO05D009555 1.1e-42 177.9 136 60.3
ECA248G0596 Erigeron canadensis HOM05D007543 ORTHO05D009555 1.4e-42 177.6 103 67.0
FAN07G2337 Fragaria x ananassa HOM05D007543 ORTHO05D009555 1.4e-42 177.6 147 56.5
HanXRQChr01g0022591 Helianthus annuus HOM05D007543 ORTHO05D009555 1.9e-42 177.2 209 41.1
GSVIVG01029024001 Vitis vinifera HOM05D007543 ORTHO05D009555 7.9e-41 171.8 123 62.6
Cc03_g07030 Coffea canephora HOM05D007543 ORTHO05D009555 1.8e-40 170.6 124 54.8
MD13G1227800 Malus domestica HOM05D007543 ORTHO05D009555 2.3e-40 170.2 111 66.7
HanXRQChr06g0183251 Helianthus annuus HOM05D007543 ORTHO05D009555 8.8e-40 168.3 107 65.4
RcHm_v2.0_Chr4g0396531 Rosa chinensis HOM05D007543 ORTHO05D009555 2.2e-38 163.7 143 52.4
SMO358G0284 Selaginella moellendorffii HOM05D007543 ORTHO05D009555 5.3e-37 159.1 164 48.2
AagrBONN_evm.TU.Sc2ySwM_117.1924 Anthoceros agrestis HOM05D007543 ORTHO05D009555 2.0e-36 157.1 201 38.8
Mapoly0044s0133 Marchantia polymorpha HOM05D007543 ORTHO05D009555 4.5e-36 156.0 193 38.9
SalBow2G1589 Salvia bowleyana HOM05D007543 ORTHO05D009555 1.3e-35 154.5 96 66.7
Peaxi162Scf00047g00165 Petunia axillaris HOM05D007543 ORTHO05D009555 9.4e-34 148.3 102 59.8
Solyc09g091160.1 Solanum lycopersicum HOM05D007543 ORTHO05D009555 6.1e-33 145.6 98 62.2
unitig_0.g2250 Utricularia gibba HOM05D007543 ORTHO05D009555 1.2e-31 141.4 106 54.7
AagrBONN_evm.TU.Sc2ySwM_368.1268 Anthoceros agrestis HOM05D007543 ORTHO05D009555 2.0e-31 140.6 203 36.0
Dinv29773 Davidia involucrata HOM05D007543 ORTHO05D009555 2.8e-30 136.7 86 65.1
SMO356G0252 Selaginella moellendorffii HOM05D007543 ORTHO05D009555 7.7e-28 128.6 184 35.9
Pp3c4_1040 Physcomitrium patens HOM05D007543 ORTHO05D009555 1.1e-26 124.8 199 33.2
Hund24855 Selenicereus undatus HOM05D007543 ORTHO05D009555 2.7e-25 120.2 73 64.4
HanXRQChr06g0183241 Helianthus annuus HOM05D007543 ORTHO05D009555 8.0e-25 118.6 103 54.4
SEGI_36569 Sequoiadendron giganteum HOM05D007543 ORTHO05D009555 1.5e-23 114.4 207 31.9
MD13G1227700 Malus domestica HOM05D007543 ORTHO05D009555 5.7e-23 112.5 98 51.0
AagrBONN_evm.TU.Sc2ySwM_344.5003 Anthoceros agrestis HOM05D007543 ORTHO05D009555 3.8e-19 99.8 98 43.9
FAN11G1069 Fragaria x ananassa HOM05D007543 ORTHO05D009555 7.5e-15 85.5 212 32.1
Cre10.g418851 Chlamydomonas reinhardtii HOM05D007543 ORTHO05D009555 3.1e-13 80.1 217 26.3
Dinv29774 Davidia involucrata HOM05D007543 ORTHO05D009555 1.6e-12 77.8 76 48.7
Cc03_g07020 Coffea canephora HOM05D007543 ORTHO05D009555 2.5e-10 70.5 61 54.1
Sopen09g034130 Solanum pennellii HOM05D007543 ORTHO05D009555 4.0e-08 63.2 50 52.0
Ciclev10006635m.g Citrus clementina HOM05D007543 ORTHO05D009555 5.7e-07 59.3 123 30.9
Solyc09g091150.2 Solanum lycopersicum HOM05D007543 ORTHO05D009555 9.8e-07 58.5 50 50.0
HPP92_022683 Vanilla planifolia HOM05D007543 ORTHO05D009555 2.9e-06 57.0 125 36.8


User provided reference genes

Program Settings