Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 1.4e-230 802.7 447 100.0
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 2.0e-189 666.0 431 85.8
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 8.6e-164 580.9 437 72.8
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 1.0e-52 211.8 467 34.9
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 6.8e-52 209.1 454 34.1
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 8.9e-52 208.8 476 34.7
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 9.8e-51 205.3 260 42.7
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 1.3e-50 204.9 260 42.3
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 1.7e-50 204.5 448 34.4
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 2.2e-50 204.1 456 34.4
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 2.2e-50 204.1 470 33.6
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 4.9e-50 203.0 464 34.7
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 6.3e-50 202.6 473 35.5
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 8.3e-50 202.2 445 36.2
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 1.1e-49 201.8 260 42.3
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 1.8e-49 201.1 260 41.9
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.8e-49 201.1 465 33.1
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 2.4e-49 200.7 468 33.3
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 2.4e-49 200.7 471 32.9
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 3.2e-49 200.3 476 34.0
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 4.1e-49 199.9 439 36.0
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 4.1e-49 199.9 448 33.5
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 4.1e-49 199.9 475 32.0
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 4.1e-49 199.9 474 32.7
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 5.4e-49 199.5 458 33.4
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 9.2e-49 198.7 422 38.2
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 1.6e-48 198.0 475 32.6
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 1.6e-48 198.0 467 34.9
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 2.0e-48 197.6 474 30.8
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 2.0e-48 197.6 475 32.6
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 3.5e-48 196.8 444 32.4
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 4.5e-48 196.4 452 32.5
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 5.9e-48 196.1 452 32.5
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 7.8e-48 195.7 453 32.7
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 7.8e-48 195.7 472 35.8
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 1.0e-47 195.3 462 33.8
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 1.7e-47 194.5 445 33.0
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.7e-47 194.5 449 32.3
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 2.9e-47 193.7 463 33.9
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 5.0e-47 193.0 480 33.8
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 1.1e-46 191.8 466 32.8
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 1.5e-46 191.4 445 33.5
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 3.3e-46 190.3 464 35.8
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 4.3e-46 189.9 446 31.4
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 4.3e-46 189.9 446 31.4
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 5.6e-46 189.5 448 31.7
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 7.3e-46 189.1 453 31.8
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 9.5e-46 188.7 260 40.8
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 1.2e-45 188.3 458 32.3
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 2.1e-45 187.6 466 35.6
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 3.6e-45 186.8 442 33.5
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 3.6e-45 186.8 461 32.3
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 3.6e-45 186.8 439 32.8
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 4.7e-45 186.4 451 34.1
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 8.0e-45 185.7 470 31.9
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 1.0e-44 185.3 485 32.2
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 1.4e-44 184.9 449 35.0
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 1.8e-44 184.5 461 33.6
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 1.8e-44 184.5 260 42.7
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 2.3e-44 184.1 467 33.4
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 2.3e-44 184.1 477 31.7
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 2.3e-44 184.1 466 33.3
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 2.3e-44 184.1 460 32.2
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 3.1e-44 183.7 452 34.7
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 4.0e-44 183.3 446 31.8
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 1.2e-43 181.8 261 39.8
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.5e-43 181.4 448 31.9
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 1.5e-43 181.4 431 33.6
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 4.4e-43 179.9 459 31.8
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 4.4e-43 179.9 454 32.4
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 5.8e-43 179.5 438 31.5
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 7.5e-43 179.1 442 33.5
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 9.8e-43 178.7 433 31.9
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 1.3e-42 178.3 479 30.7
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 1.7e-42 177.9 463 33.0
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 2.2e-42 177.6 461 34.3
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 2.9e-42 177.2 459 32.7
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 3.7e-42 176.8 419 33.7
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 4.9e-42 176.4 461 33.8
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 6.4e-42 176.0 428 32.9
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 1.4e-41 174.9 260 38.1
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 1.4e-41 174.9 428 32.9
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 2.4e-41 174.1 461 33.6
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 4.1e-41 173.3 470 31.1
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 4.1e-41 173.3 250 41.2
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.4e-41 172.9 445 32.4
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 1.2e-40 171.8 258 38.0
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 1.6e-40 171.4 427 31.9
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 1.6e-40 171.4 260 38.5
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 2.0e-40 171.0 250 40.4
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 3.5e-40 170.2 260 38.5
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 4.6e-40 169.9 465 32.7
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 6.0e-40 169.5 447 30.6
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 2.3e-39 167.5 456 31.1
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 2.3e-39 167.5 260 38.8
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.9e-39 166.8 447 31.5
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 5.0e-39 166.4 259 36.7
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.0e-39 166.4 249 39.4
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.0e-39 166.4 249 39.4
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 6.6e-39 166.0 417 34.3
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 8.6e-39 165.6 442 30.5
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 1.5e-38 164.9 471 31.2
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 9.5e-38 162.2 467 30.2
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 1.6e-37 161.4 249 37.8
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 1.6e-37 161.4 470 29.8
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 3.6e-37 160.2 432 33.8
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 2.0e-35 154.5 241 41.1
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 8.3e-34 149.1 431 32.0
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.4e-33 148.3 382 32.5
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.9e-33 147.9 431 31.8
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 2.1e-32 144.4 461 29.7
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 2.7e-32 144.1 261 35.2
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 4.6e-32 143.3 461 28.4
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 1.0e-31 142.1 262 34.7
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 7.3e-30 136.0 463 30.5
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 1.2e-29 135.2 461 30.8
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 8.1e-29 132.5 263 33.1
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 1.1e-28 132.1 463 28.5
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 1.1e-28 132.1 459 27.5
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 2.3e-28 131.0 445 31.7
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 2.2e-26 124.4 261 31.8
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 6.4e-26 122.9 433 27.9
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 1.4e-25 121.7 367 30.8
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 1.3e-23 115.2 396 27.5
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 1.6e-21 108.2 266 28.6
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 8.1e-21 105.9 282 28.7
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 3.4e-19 100.5 407 26.5
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 3.4e-19 100.5 112 40.2
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 1.7e-18 98.2 195 33.3
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 1.6e-16 91.7 135 39.3
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 7.8e-16 89.4 347 28.5
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 5.1e-15 86.7 196 32.1
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 2.5e-14 84.3 416 28.1
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 3.3e-14 84.0 250 26.4
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.8e-13 80.9 226 28.8
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.1e-12 79.0 108 38.9
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 1.4e-12 78.6 113 39.8
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 1.3e-10 72.0 246 29.3
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 2.3e-07 61.2 116 35.3
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 1.9e-06 58.2 100 34.0
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 7.3e-06 56.2 88 43.2
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 9.6e-06 55.8 286 26.9


User provided reference genes

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