Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb221560 Zea mays HOM05D007585 ORTHO05D009515 6.7e-125 450.7 225 100.0
Zm00001eb045560 Zea mays HOM05D007585 ORTHO05D009515 4.6e-65 251.9 178 78.1
Os10g0481450 Oryza sativa ssp. japonica HOM05D007585 ORTHO05D009515 1.1e-21 107.8 130 50.8
HPP92_020739 Vanilla planifolia HOM05D007585 ORTHO05D009515 2.5e-18 96.7 140 46.4
TWI60G0621 Tripterygium wilfordii HOM05D007585 ORTHO05D009515 1.2e-17 94.4 104 50.0
Aqoxy5G04360 Aquilegia oxysepala HOM05D007585 ORTHO05D009515 2.1e-17 93.6 139 42.4
Potri.011G149200 Populus trichocarpa HOM05D007585 ORTHO05D009515 3.6e-17 92.8 53 71.7
CsaV3_5G001450 Cucumis sativus L. HOM05D007585 ORTHO05D009515 4.7e-17 92.4 61 63.9
Nn3g18759 Nelumbo nucifera HOM05D007585 ORTHO05D009515 4.7e-17 92.4 111 45.9
Solyc08g013710.4 Solanum lycopersicum HOM05D007585 ORTHO05D009515 6.1e-17 92.0 53 71.7
Sopen08g004550 Solanum pennellii HOM05D007585 ORTHO05D009515 6.1e-17 92.0 53 71.7
PGSC0003DMG400005804 Solanum tuberosum HOM05D007585 ORTHO05D009515 6.1e-17 92.0 53 71.7
Ciclev10023325m.g Citrus clementina HOM05D007585 ORTHO05D009515 7.9e-17 91.7 53 71.7
Sabra16G0305900 Salix brachista HOM05D007585 ORTHO05D009515 7.9e-17 91.7 116 47.4
Manes.01G000124 Manihot esculenta HOM05D007585 ORTHO05D009515 1.0e-16 91.3 99 46.5
vmacro11475 Vaccinium macrocarpon HOM05D007585 ORTHO05D009515 1.0e-16 91.3 85 50.6
MELO3C005804.2 Cucumis melo HOM05D007585 ORTHO05D009515 1.4e-16 90.9 138 42.8
Gohir.D12G244000 Gossypium hirsutum HOM05D007585 ORTHO05D009515 1.4e-16 90.9 53 67.9
Gorai.008G261500 Gossypium raimondii HOM05D007585 ORTHO05D009515 1.4e-16 90.9 53 67.9
Sed0016019 Sechium edule HOM05D007585 ORTHO05D009515 1.4e-16 90.9 61 63.9
TWI81G0283 Tripterygium wilfordii HOM05D007585 ORTHO05D009515 1.4e-16 90.9 103 48.5
ATR0579G137 Amborella trichopoda HOM05D007585 ORTHO05D009515 1.8e-16 90.5 53 66.0
CDE02G4680 Ceratophyllum demersum HOM05D007585 ORTHO05D009515 1.8e-16 90.5 123 40.7
Duzib084G0286 Durio zibethinus HOM05D007585 ORTHO05D009515 1.8e-16 90.5 53 67.9
Eucgr.E01096 Eucalyptus grandis HOM05D007585 ORTHO05D009515 1.8e-16 90.5 48 77.1
THA.LOC104823619 Tarenaya hassleriana HOM05D007585 ORTHO05D009515 1.8e-16 90.5 56 67.9
Atru.chr9.1828 Acer truncatum HOM05D007585 ORTHO05D009515 2.3e-16 90.1 48 79.2
CANSAT21G1102 Cannabis sativa HOM05D007585 ORTHO05D009515 2.3e-16 90.1 48 79.2
Carub.0004s2815 Capsella rubella HOM05D007585 ORTHO05D009515 2.3e-16 90.1 60 63.3
Lj2A150G28 Lonicera japonica HOM05D007585 ORTHO05D009515 2.3e-16 90.1 48 77.1
Thecc.03G215100 Theobroma cacao HOM05D007585 ORTHO05D009515 2.3e-16 90.1 53 67.9
Prupe.5G135500 Prunus persica HOM05D007585 ORTHO05D009515 3.0e-16 89.7 48 77.1
Sed0011209 Sechium edule HOM05D007585 ORTHO05D009515 3.0e-16 89.7 51 70.6
BcaC07g40047 Brassica carinata HOM05D007585 ORTHO05D009515 3.9e-16 89.4 53 67.9
CAN.G792.13 Capsicum annuum HOM05D007585 ORTHO05D009515 3.9e-16 89.4 48 77.1
Cpa.g.sc37.113 Carica papaya HOM05D007585 ORTHO05D009515 3.9e-16 89.4 48 77.1
Gohir.A12G243000 Gossypium hirsutum HOM05D007585 ORTHO05D009515 3.9e-16 89.4 53 66.0
Sp5g05480 Schrenkiella parvula HOM05D007585 ORTHO05D009515 3.9e-16 89.4 53 66.0
TAR376G0968 Trochodendron aralioides HOM05D007585 ORTHO05D009515 3.9e-16 89.4 91 48.4
MD06G1124900 Malus domestica HOM05D007585 ORTHO05D009515 8.8e-16 88.2 48 75.0
BcaC07g40077 Brassica carinata HOM05D007585 ORTHO05D009515 1.1e-15 87.8 51 68.6
AL4G44710 Arabidopsis lyrata HOM05D007585 ORTHO05D009515 1.5e-15 87.4 84 50.0
FvH4_5g10340 Fragaria vesca HOM05D007585 ORTHO05D009515 1.5e-15 87.4 48 75.0
FAN04G1607 Fragaria x ananassa HOM05D007585 ORTHO05D009515 1.5e-15 87.4 48 75.0
ClCG01G001320 Citrullus lanatus HOM05D007585 ORTHO05D009515 2.0e-15 87.0 140 39.3
FAN08G0038 Fragaria x ananassa HOM05D007585 ORTHO05D009515 2.0e-15 87.0 50 72.0
RcHm_v2.0_Chr7g0187881 Rosa chinensis HOM05D007585 ORTHO05D009515 2.0e-15 87.0 48 72.9
AT2G45530 Arabidopsis thaliana HOM05D007585 ORTHO05D009515 2.6e-15 86.7 84 50.0
BcaC07g40025 Brassica carinata HOM05D007585 ORTHO05D009515 2.6e-15 86.7 51 68.6
BolC8t50858H Brassica oleracea HOM05D002367 ORTHO05D002566 2.6e-15 86.7 51 66.7
Potri.001G452800 Populus trichocarpa HOM05D007585 ORTHO05D009515 2.6e-15 86.7 116 45.7
GSVIVG01019704001 Vitis vinifera HOM05D007585 ORTHO05D009515 2.6e-15 86.7 129 41.9
C08p32430 Brassica napus HOM05D002367 ORTHO05D009515 3.3e-15 86.3 50 68.0
Duzib205G0220 Durio zibethinus HOM05D007585 ORTHO05D009515 3.3e-15 86.3 53 64.2
Thhalv10006206m.g Eutrema salsugineum HOM05D007585 ORTHO05D009515 3.3e-15 86.3 124 41.1
MBI04_g27762_MAGBIO Magnolia biondii HOM05D007585 ORTHO05D009515 3.3e-15 86.3 179 39.7
PSO063G4912 Papaver somniferum HOM05D007585 ORTHO05D009515 3.3e-15 86.3 55 65.5
PSO782G2000 Papaver somniferum HOM05D007585 ORTHO05D009515 3.3e-15 86.3 55 65.5
FAN13G3159 Fragaria x ananassa HOM05D007585 ORTHO05D009515 4.4e-15 85.9 46 76.1
FAN18G3755 Fragaria x ananassa HOM05D007585 ORTHO05D009515 4.4e-15 85.9 46 76.1
Nitab4.5_0000799g0090 Nicotiana tabacum HOM05D007585 ORTHO05D009515 4.4e-15 85.9 92 47.8
Pp3c9_21140 Physcomitrium patens HOM05D007585 ORTHO05D009515 5.7e-15 85.5 46 65.2
Sabra11G0134300 Salix brachista HOM05D007585 ORTHO05D009515 5.7e-15 85.5 137 36.5
CiPaw.11G108300 Carya illinoinensis HOM05D007585 ORTHO05D009515 7.4e-15 85.1 45 80.0
Dinv08688 Davidia involucrata HOM05D007585 ORTHO05D009515 7.4e-15 85.1 48 72.9
Nitab4.5_0005519g0020 Nicotiana tabacum HOM05D007585 ORTHO05D009515 7.4e-15 85.1 100 45.0
QL12p003204 Quercus lobata HOM05D007585 ORTHO05D009515 7.4e-15 85.1 57 66.7
GSVIVG01019706001 Vitis vinifera HOM05D007585 ORTHO05D009515 7.4e-15 85.1 77 53.2
Cfa011883 Carpinus fangiana HOM05D007585 ORTHO05D009515 9.7e-15 84.7 123 42.3
CSS0006673 Camellia sinensis var. sinensis HOM05D007585 ORTHO05D009515 1.3e-14 84.3 47 72.3
Pp3c18_16700 Physcomitrium patens HOM05D007585 ORTHO05D009515 1.7e-14 84.0 49 57.1
CDE02G1447 Ceratophyllum demersum HOM05D007585 ORTHO05D009515 2.8e-14 83.2 123 39.8
Gohir.D03G088600 Gossypium hirsutum HOM05D007585 ORTHO05D009515 4.8e-14 82.4 165 37.6
Gorai.003G073200 Gossypium raimondii HOM05D007585 ORTHO05D009515 4.8e-14 82.4 165 37.6
A09p50020 Brassica napus HOM05D002367 ORTHO05D009515 6.3e-14 82.0 162 36.4
BraA09t40453Z Brassica rapa HOM05D007585 ORTHO05D009515 6.3e-14 82.0 162 36.4
Gohir.A02G094900 Gossypium hirsutum HOM05D007585 ORTHO05D009515 8.2e-14 81.6 165 37.6
PGR042G2790 Punica granatum HOM05D007585 ORTHO05D009515 8.2e-14 81.6 177 36.7
Migut.E00714 Erythranthe guttata HOM05D007585 ORTHO05D009515 1.1e-13 81.3 85 44.7
Migut.O00718 Erythranthe guttata HOM05D007585 ORTHO05D009515 1.1e-13 81.3 85 44.7
AagrBONN_evm.TU.Sc2ySwM_344.680 Anthoceros agrestis HOM05D007585 ORTHO05D009515 1.4e-13 80.9 58 56.9
Cc08_g17080 Coffea canephora HOM05D007585 ORTHO05D009515 1.4e-13 80.9 48 66.7
MSTRG.13690 Avicennia marina HOM05D007585 ORTHO05D009515 1.8e-13 80.5 53 62.3
Haze_09220 Corylus avellana HOM05D007585 ORTHO05D009515 1.8e-13 80.5 125 42.4
Mapoly0064s0081 Marchantia polymorpha HOM05D007585 ORTHO05D009515 1.8e-13 80.5 46 63.0
CDE02G0183 Ceratophyllum demersum HOM05D002523 ORTHO05D002951 2.4e-13 80.1 48 64.6
TAR375G0052 Trochodendron aralioides HOM05D007585 ORTHO05D009515 5.3e-13 79.0 199 35.2
CDE02G0688 Ceratophyllum demersum HOM05D007585 ORTHO05D009515 7.0e-13 78.6 48 64.6
CDE04G3607 Ceratophyllum demersum HOM05D007585 ORTHO05D009515 7.0e-13 78.6 48 62.5
MBI12_g08710_MAGBIO Magnolia biondii HOM05D007585 ORTHO05D009515 3.5e-12 76.3 47 63.8
SMO364G0716 Selaginella moellendorffii HOM05D007585 ORTHO05D009515 5.9e-12 75.5 150 33.3
Pp3c21_260 Physcomitrium patens HOM05D007585 ORTHO05D009515 1.0e-11 74.7 48 54.2
Atru.chr3.4043 Acer truncatum HOM05D001002 ORTHO05D000802 3.6e-09 66.2 59 47.5
CDE04G1466 Ceratophyllum demersum HOM05D007585 ORTHO05D009515 6.1e-09 65.5 74 32.4
Mapoly0067s0072 Marchantia polymorpha HOM05D001002 ORTHO05D000802 1.1e-07 61.2 67 43.3
Dinv11952 Davidia involucrata HOM05D001002 ORTHO05D000802 3.3e-07 59.7 86 34.9
CDE11G0540 Ceratophyllum demersum HOM05D007585 ORTHO05D009515 5.7e-07 58.9 43 53.5
DCAR_018938 Daucus carota HOM05D001002 ORTHO05D000802 5.7e-07 58.9 84 35.7
BolC4t25424H Brassica oleracea HOM05D001002 ORTHO05D000802 7.5e-07 58.5 47 48.9
Sc05g0007010 Simmondsia chinensis HOM05D001002 ORTHO05D000802 7.5e-07 58.5 70 40.0
CiPaw.14G062900 Carya illinoinensis HOM05D001002 ORTHO05D000802 9.7e-07 58.2 70 37.1
ATR0594G005 Amborella trichopoda HOM05D001002 ORTHO05D000802 1.7e-06 57.4 90 32.2
Cc02_g15420 Coffea canephora HOM05D001002 ORTHO05D000802 1.7e-06 57.4 67 38.8
Thhalv10010904m.g Eutrema salsugineum HOM05D001002 ORTHO05D000802 1.7e-06 57.4 50 46.0
HPP92_019863 Vanilla planifolia HOM05D001002 ORTHO05D000802 1.7e-06 57.4 77 40.3
CANSAT54G1577 Cannabis sativa HOM05D001002 ORTHO05D000802 2.2e-06 57.0 40 45.0
Nitab4.5_0000880g0060 Nicotiana tabacum HOM05D001002 ORTHO05D000802 2.2e-06 57.0 42 47.6
Nitab4.5_0002405g0100 Nicotiana tabacum HOM05D001002 ORTHO05D000802 2.2e-06 57.0 42 47.6
Prupe.6G267500 Prunus persica HOM05D001002 ORTHO05D000802 2.2e-06 57.0 60 41.7
Sp5g08350 Schrenkiella parvula HOM05D001002 ORTHO05D000802 2.2e-06 57.0 68 36.8
BraA04t16269Z Brassica rapa HOM05D001002 ORTHO05D000802 2.8e-06 56.6 70 35.7
CSS0035589 Camellia sinensis var. sinensis HOM05D001002 ORTHO05D000802 2.8e-06 56.6 62 38.7
MD04G1142100 Malus domestica HOM05D001002 ORTHO05D000802 2.8e-06 56.6 35 57.1
Medtr7g065920 Medicago truncatula HOM05D001002 ORTHO05D000802 2.8e-06 56.6 72 34.7
Os05g0207400 Oryza sativa ssp. japonica HOM05D001002 ORTHO05D000802 2.8e-06 56.6 35 62.9
BcaC02g09105 Brassica carinata HOM05D000958 ORTHO05D000802 3.7e-06 56.2 47 46.8
A04p05740 Brassica napus HOM05D001002 ORTHO05D000802 3.7e-06 56.2 47 44.7
Ca_07592_v3 Cicer arietinum L. HOM05D001002 ORTHO05D000802 3.7e-06 56.2 59 39.0
Lj3A959G50 Lonicera japonica HOM05D001002 ORTHO05D000802 3.7e-06 56.2 50 44.0
MD12G1156700 Malus domestica HOM05D001002 ORTHO05D000802 3.7e-06 56.2 38 50.0
PGR004G1312 Punica granatum HOM05D001002 ORTHO05D000802 3.7e-06 56.2 34 58.8
SalBow7G2068 Salvia bowleyana HOM05D001002 ORTHO05D000802 3.7e-06 56.2 87 34.5
SGA_v2.0_scaffold99G29514 Striga asiatica HOM05D007585 ORTHO05D009515 3.7e-06 56.2 88 38.6
unitig_26.g9344 Utricularia gibba HOM05D001002 ORTHO05D000802 3.7e-06 56.2 124 28.2
AL4G34920 Arabidopsis lyrata HOM05D001002 ORTHO05D000802 4.8e-06 55.8 54 42.6
AT2G37950 Arabidopsis thaliana HOM05D001002 ORTHO05D000802 4.8e-06 55.8 54 42.6
CAN.G483.10 Capsicum annuum HOM05D001002 ORTHO05D000802 4.8e-06 55.8 34 55.9
CARHR132500 Cardamine hirsuta HOM05D001002 ORTHO05D000802 4.8e-06 55.8 57 42.1
SGA_v2.0_scaffold94G28551 Striga asiatica HOM05D001002 ORTHO05D000802 4.8e-06 55.8 36 55.6
THA.LOC104824487 Tarenaya hassleriana HOM05D001002 ORTHO05D000802 4.8e-06 55.8 45 46.7
CANSAT35G1891 Cannabis sativa HOM05D001002 ORTHO05D000802 6.3e-06 55.5 38 50.0
Carub.0004s1991 Capsella rubella HOM05D001002 ORTHO05D000802 6.3e-06 55.5 54 42.6
Lalb_Chr17g0346571 Lupinus albus HOM05D001002 ORTHO05D000802 6.3e-06 55.5 50 38.0
SMO361G0664 Selaginella moellendorffii HOM05D015747 ORTHO05D017329 6.3e-06 55.5 48 50.0
TAR626G1123 Trochodendron aralioides HOM05D001002 ORTHO05D000802 6.3e-06 55.5 50 44.0
unitig_60.g25685 Utricularia gibba HOM05D001002 ORTHO05D000802 6.3e-06 55.5 138 31.9
CSS0034025 Camellia sinensis var. sinensis HOM05D001002 ORTHO05D000802 8.2e-06 55.1 109 33.0
Duzib093G0453 Durio zibethinus HOM05D001002 ORTHO05D000802 8.2e-06 55.1 40 52.5
FAN09G3991 Fragaria x ananassa HOM05D001002 ORTHO05D000802 8.2e-06 55.1 38 50.0
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 8.2e-06 55.1 40 50.0


User provided reference genes

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