Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 1.9e-80 302.4 144 100.0
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 1.3e-68 263.1 144 88.9
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 2.5e-64 248.8 144 83.3
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 8.3e-60 233.8 142 75.4
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 3.8e-57 224.9 147 73.5
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 1.5e-56 223.0 147 72.8
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 2.5e-56 222.2 148 71.6
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 5.6e-56 221.1 146 69.9
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 9.5e-56 220.3 146 69.2
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 2.1e-55 219.2 147 70.7
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 2.1e-55 219.2 146 69.9
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 2.8e-55 218.8 146 70.5
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 6.1e-55 217.6 146 69.2
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 6.1e-55 217.6 146 69.9
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 8.0e-55 217.2 146 69.2
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 1.0e-54 216.9 146 68.5
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 1.4e-54 216.5 148 68.2
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 4.0e-54 214.9 147 68.7
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 4.0e-54 214.9 147 68.7
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 4.0e-54 214.9 146 67.1
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 4.0e-54 214.9 147 69.4
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 5.2e-54 214.5 146 69.9
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 5.2e-54 214.5 146 69.9
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 5.2e-54 214.5 146 68.5
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 6.8e-54 214.2 146 67.8
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 8.9e-54 213.8 146 68.5
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 8.9e-54 213.8 146 71.9
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 1.2e-53 213.4 146 67.1
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 2.0e-53 212.6 146 67.1
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 2.0e-53 212.6 147 68.7
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 2.0e-53 212.6 146 67.1
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 2.0e-53 212.6 146 67.8
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 2.0e-53 212.6 148 66.2
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 2.6e-53 212.2 148 70.9
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 2.6e-53 212.2 146 67.8
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 3.4e-53 211.8 146 68.5
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 3.4e-53 211.8 146 66.4
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 3.4e-53 211.8 146 66.4
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 3.4e-53 211.8 146 66.4
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 4.4e-53 211.5 147 67.3
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 4.4e-53 211.5 148 68.9
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 4.4e-53 211.5 146 68.5
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 4.4e-53 211.5 146 66.4
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 5.8e-53 211.1 150 66.7
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 7.5e-53 210.7 146 67.1
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 9.8e-53 210.3 146 69.9
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.3e-52 209.9 147 69.4
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 1.7e-52 209.5 146 66.4
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 1.7e-52 209.5 146 67.8
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 1.7e-52 209.5 146 68.5
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 2.2e-52 209.1 146 67.1
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 2.9e-52 208.8 146 66.4
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 3.7e-52 208.4 147 66.7
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 4.9e-52 208.0 146 68.5
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 4.9e-52 208.0 147 66.7
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 6.4e-52 207.6 146 65.8
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 8.3e-52 207.2 146 66.4
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 8.3e-52 207.2 146 67.1
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.4e-51 206.5 144 66.7
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 1.4e-51 206.5 146 65.8
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 1.8e-51 206.1 146 65.8
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 1.8e-51 206.1 146 67.8
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 2.4e-51 205.7 148 66.9
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 2.4e-51 205.7 146 66.4
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 2.4e-51 205.7 146 65.1
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 2.4e-51 205.7 149 66.4
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 2.4e-51 205.7 146 65.8
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 3.2e-51 205.3 146 65.1
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 3.2e-51 205.3 146 65.8
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 3.2e-51 205.3 150 66.0
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 3.2e-51 205.3 150 66.7
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 4.1e-51 204.9 146 65.8
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 4.1e-51 204.9 146 65.8
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 4.1e-51 204.9 146 65.8
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 5.4e-51 204.5 148 63.5
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 5.4e-51 204.5 143 67.8
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 5.4e-51 204.5 146 66.4
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 7.0e-51 204.1 146 64.4
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 7.0e-51 204.1 147 66.0
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 9.2e-51 203.8 146 65.8
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 9.2e-51 203.8 146 65.1
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 1.2e-50 203.4 146 65.1
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.2e-50 203.4 146 65.8
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 1.6e-50 203.0 147 64.6
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 2.0e-50 202.6 147 65.3
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 2.0e-50 202.6 146 67.1
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 4.6e-50 201.4 146 64.4
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 4.6e-50 201.4 149 65.8
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 4.6e-50 201.4 149 65.8
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 6.0e-50 201.1 147 66.0
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 6.0e-50 201.1 148 64.9
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 6.0e-50 201.1 146 63.7
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 7.8e-50 200.7 138 68.1
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 1.0e-49 200.3 147 66.0
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 5.0e-49 198.0 146 65.1
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 5.0e-49 198.0 146 63.7
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 5.0e-49 198.0 147 66.7
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 8.6e-49 197.2 146 63.0
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 1.1e-48 196.8 146 65.8
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 1.5e-48 196.4 146 63.7
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 3.3e-48 195.3 150 64.7
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 7.3e-48 194.1 137 65.7
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 9.5e-48 193.7 132 67.4
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 1.6e-47 193.0 149 63.8
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.6e-47 193.0 132 67.4
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 1.6e-47 193.0 132 67.4
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 2.1e-47 192.6 150 64.0
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 2.1e-47 192.6 150 64.0
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 3.6e-47 191.8 147 64.6
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 3.6e-47 191.8 147 64.6
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 4.7e-47 191.4 150 63.3
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 4.7e-47 191.4 150 63.3
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 6.2e-47 191.0 147 63.9
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 6.2e-47 191.0 147 63.9
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 8.0e-47 190.7 149 62.4
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.1e-46 190.3 140 64.3
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 1.8e-46 189.5 148 62.8
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.8e-46 189.5 150 63.3
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 1.8e-46 189.5 149 62.4
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 3.1e-46 188.7 150 62.0
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 3.1e-46 188.7 150 62.0
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 3.1e-46 188.7 150 62.0
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 6.8e-46 187.6 148 63.5
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 6.8e-46 187.6 148 63.5
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 6.8e-46 187.6 148 63.5
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 6.8e-46 187.6 150 62.0
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 1.5e-45 186.4 133 66.2
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.5e-45 186.4 147 61.2
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 2.0e-45 186.0 130 66.2
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 2.0e-45 186.0 150 62.0
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 2.0e-45 186.0 150 61.3
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 4.4e-45 184.9 131 63.4
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 5.8e-45 184.5 125 68.0
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 7.5e-45 184.1 146 57.5
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.7e-44 183.0 147 61.9
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 1.7e-44 183.0 146 58.2
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 2.2e-44 182.6 151 57.0
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 1.9e-43 179.5 150 60.7
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 7.0e-43 177.6 116 70.7
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 7.0e-43 177.6 134 64.9
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.0e-41 173.7 139 61.9
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 1.0e-41 173.7 123 65.9
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 3.4e-37 158.7 144 59.0
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 2.9e-36 155.6 146 55.5
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 1.0e-33 147.1 101 67.3
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.3e-33 146.0 146 54.1
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 2.3e-33 146.0 101 69.3
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 5.1e-33 144.8 113 65.5
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 2.5e-32 142.5 132 51.5
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 2.6e-29 132.5 146 49.3
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 1.6e-23 113.2 166 39.8
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 2.3e-17 92.8 75 60.0
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 5.1e-17 91.7 94 42.6
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 7.3e-16 87.8 68 61.8
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 9.0e-14 80.9 126 38.1
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 1.9e-08 63.2 59 42.4


User provided reference genes

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