Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb220160 Zea mays HOM05D001020 ORTHO05D441921 9.4e-99 363.6 195 100.0
Zm00001eb206670 Zea mays HOM05D001020 ORTHO05D001137 2.3e-12 76.6 44 84.1
Zm00001eb217530 Zea mays HOM05D001020 ORTHO05D001137 1.9e-11 73.6 44 79.5
Os02g0179600 Oryza sativa ssp. japonica HOM05D001020 ORTHO05D001137 2.5e-11 73.2 44 77.3
CAN.G793.42 Capsicum annuum HOM05D001020 ORTHO05D001137 1.4e-09 67.4 44 72.7
Nitab4.5_0000044g0130 Nicotiana tabacum HOM05D001020 ORTHO05D001137 5.3e-09 65.5 44 70.5
Peaxi162Scf00409g00093 Petunia axillaris HOM05D001020 ORTHO05D001137 5.3e-09 65.5 44 70.5
Nitab4.5_0000044g0110 Nicotiana tabacum HOM05D001020 ORTHO05D001137 1.5e-08 63.9 48 66.7
Nitab4.5_0004343g0030 Nicotiana tabacum HOM05D001020 ORTHO05D001137 2.0e-08 63.5 44 68.2
Solyc09g089940.1 Solanum lycopersicum HOM05D001020 ORTHO05D001137 2.0e-08 63.5 44 70.5
Sopen09g032870 Solanum pennellii HOM05D001020 ORTHO05D001137 2.0e-08 63.5 44 70.5
PGSC0003DMG400017230 Solanum tuberosum HOM05D001020 ORTHO05D001137 2.0e-08 63.5 44 70.5
Sed0009996 Sechium edule HOM05D001020 ORTHO05D001137 3.4e-08 62.8 44 68.2
Zm00001eb231660 Zea mays HOM05D001230 ORTHO05D001067 3.4e-08 62.8 56 57.1
SEGI_35188 Sequoiadendron giganteum HOM05D001020 ORTHO05D001137 4.5e-08 62.4 47 63.8
SEGI_23534 Sequoiadendron giganteum HOM05D001020 ORTHO05D001137 5.8e-08 62.0 47 63.8
Cc03_g05420 Coffea canephora HOM05D001020 ORTHO05D001137 7.6e-08 61.6 44 65.9
Peaxi162Scf00024g00311 Petunia axillaris HOM05D001020 ORTHO05D001137 1.0e-07 61.2 47 66.0
Carub.0008s0520 Capsella rubella HOM05D001020 ORTHO05D001137 1.3e-07 60.8 40 70.0
MD13G1126800 Malus domestica HOM05D001020 ORTHO05D001137 1.3e-07 60.8 44 63.6
Os06g0652100 Oryza sativa ssp. japonica HOM05D001020 ORTHO05D001137 1.3e-07 60.8 40 67.5
Aa31LG3G14450 Aethionema arabicum HOM05D001020 ORTHO05D001137 1.7e-07 60.5 86 44.2
Manes.09G186101 Manihot esculenta HOM05D001020 ORTHO05D001137 1.7e-07 60.5 44 65.9
Peaxi162Scf00928g00010 Petunia axillaris HOM05D001020 ORTHO05D001137 1.7e-07 60.5 47 66.0
Sed0026107 Sechium edule HOM05D001020 ORTHO05D001137 1.7e-07 60.5 44 65.9
vmacro15433 Vaccinium macrocarpon HOM05D001020 ORTHO05D001137 2.2e-07 60.1 44 65.9
MD00G1095100 Malus domestica HOM05D001020 ORTHO05D001137 2.9e-07 59.7 73 47.9
Manes.09G186000 Manihot esculenta HOM05D001020 ORTHO05D001137 2.9e-07 59.7 44 61.4
Nitab4.5_0000593g0050 Nicotiana tabacum HOM05D001020 ORTHO05D001137 2.9e-07 59.7 47 63.8
Nitab4.5_0003408g0070 Nicotiana tabacum HOM05D001020 ORTHO05D001137 2.9e-07 59.7 47 63.8
vmacro13889 Vaccinium macrocarpon HOM05D001020 ORTHO05D001137 2.9e-07 59.7 44 63.6
Aa31LG5G3710 Aethionema arabicum HOM05D001020 ORTHO05D001137 3.8e-07 59.3 40 67.5
Dinv14813 Davidia involucrata HOM05D001020 ORTHO05D001137 3.8e-07 59.3 44 68.2
FvH4_4g23010 Fragaria vesca HOM05D001020 ORTHO05D001137 3.8e-07 59.3 44 65.9
FAN12G2612 Fragaria x ananassa HOM05D001020 ORTHO05D001137 3.8e-07 59.3 44 65.9
FAN12G2930 Fragaria x ananassa HOM05D001020 ORTHO05D001137 3.8e-07 59.3 44 65.9
Nitab4.5_0004343g0010 Nicotiana tabacum HOM05D001020 ORTHO05D001137 3.8e-07 59.3 47 63.8
Sc24g0002390 Simmondsia chinensis HOM05D001020 ORTHO05D001137 3.8e-07 59.3 40 67.5
Atru.chr4.2081 Acer truncatum HOM05D001020 ORTHO05D001137 4.9e-07 58.9 40 70.0
AL8G16960 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 4.9e-07 58.9 40 67.5
CAN.G135.56 Capsicum annuum HOM05D001020 ORTHO05D001137 4.9e-07 58.9 47 61.7
COL.COLO4_23626 Corchorus olitorius HOM05D001020 ORTHO05D001137 4.9e-07 58.9 44 63.6
MELO3C008979.2 Cucumis melo HOM05D001020 ORTHO05D001137 4.9e-07 58.9 44 63.6
DCAR_002322 Daucus carota HOM05D001020 ORTHO05D001137 4.9e-07 58.9 40 65.0
FAN07G2000 Fragaria x ananassa HOM05D001020 ORTHO05D001137 4.9e-07 58.9 44 65.9
Lj6A663T84 Lonicera japonica HOM05D001020 ORTHO05D001137 4.9e-07 58.9 47 61.7
Lalb_Chr04g0253271 Lupinus albus HOM05D001020 ORTHO05D001137 4.9e-07 58.9 44 65.9
MD16G1127300 Malus domestica HOM05D001020 ORTHO05D001137 4.9e-07 58.9 44 63.6
RcHm_v2.0_Chr4g0429291 Rosa chinensis HOM05D001020 ORTHO05D001137 4.9e-07 58.9 44 65.9
Thecc.04G267200 Theobroma cacao HOM05D001020 ORTHO05D001137 4.9e-07 58.9 44 63.6
AT5G43400 Arabidopsis thaliana HOM05D001020 ORTHO05D001137 6.5e-07 58.5 40 67.5
Carub.0003s3442 Capsella rubella HOM05D001020 ORTHO05D001137 6.5e-07 58.5 40 65.0
COL.COLO4_15988 Corchorus olitorius HOM05D001020 ORTHO05D001137 6.5e-07 58.5 44 63.6
COL.COLO4_20345 Corchorus olitorius HOM05D001020 ORTHO05D001137 6.5e-07 58.5 47 63.8
CsaV3_4G031010 Cucumis sativus L. HOM05D001020 ORTHO05D001137 6.5e-07 58.5 44 63.6
Dinv29874 Davidia involucrata HOM05D001020 ORTHO05D001137 6.5e-07 58.5 40 70.0
Eucgr.H03370 Eucalyptus grandis HOM05D001020 ORTHO05D001137 6.5e-07 58.5 44 65.9
FAN05G1076 Fragaria x ananassa HOM05D001020 ORTHO05D001137 6.5e-07 58.5 47 59.6
Dinv24155 Davidia involucrata HOM05D001020 ORTHO05D001137 8.4e-07 58.2 44 63.6
Eucgr.H03373 Eucalyptus grandis HOM05D001020 ORTHO05D001137 8.4e-07 58.2 44 65.9
Hma1.2p1_0267F.1_g107310 Hydrangea macrophylla HOM05D001020 ORTHO05D001137 8.4e-07 58.2 44 63.6
Mapoly0087s0003 Marchantia polymorpha HOM05D001020 ORTHO05D001137 8.4e-07 58.2 40 67.5
Peaxi162Scf00336g00172 Petunia axillaris HOM05D001020 ORTHO05D001137 8.4e-07 58.2 48 60.4
Potri.003G165200 Populus trichocarpa HOM05D001020 ORTHO05D001137 8.4e-07 58.2 44 63.6
SMO198G0049 Selaginella moellendorffii HOM05D001020 ORTHO05D001137 8.4e-07 58.2 40 62.5
SMO272G0027 Selaginella moellendorffii HOM05D001020 ORTHO05D001137 8.4e-07 58.2 40 62.5
VMungo1215G0384 Vigna mungo HOM05D001020 ORTHO05D001137 8.4e-07 58.2 44 65.9
FvH4_6g30070 Fragaria vesca HOM05D001020 ORTHO05D001137 1.1e-06 57.8 47 59.6
Glyma.01G061800 Glycine max HOM05D001020 ORTHO05D001137 1.1e-06 57.8 44 63.6
Peaxi162Scf00128g01112 Petunia axillaris HOM05D001020 ORTHO05D001137 1.1e-06 57.8 47 63.8
Phvul.002G119600 Phaseolus vulgaris HOM05D001020 ORTHO05D001137 1.1e-06 57.8 44 65.9
PGSC0003DMG400027351 Solanum tuberosum HOM05D001020 ORTHO05D001137 1.1e-06 57.8 47 59.6
Ah.05g168920 Amaranthus hybridus HOM05D001020 ORTHO05D001137 1.4e-06 57.4 44 59.1
arahy.Tifrunner.gnm1.ann1.FE9TG6 Arachis hypogaea HOM05D001020 ORTHO05D001137 1.4e-06 57.4 44 65.9
A06p47860 Brassica napus HOM05D001020 ORTHO05D001137 1.4e-06 57.4 40 67.5
BraA06t27656Z Brassica rapa HOM05D001020 ORTHO05D001137 1.4e-06 57.4 40 67.5
CARHR200260 Cardamine hirsuta HOM05D001020 ORTHO05D001137 1.4e-06 57.4 40 60.0
CDE06G1512 Ceratophyllum demersum HOM05D001020 ORTHO05D001137 1.4e-06 57.4 40 70.0
ClCG04G001470 Citrullus lanatus HOM05D001020 ORTHO05D001137 1.4e-06 57.4 44 61.4
Dinv33703 Davidia involucrata HOM05D001020 ORTHO05D001137 1.4e-06 57.4 44 63.6
FAN13G1367 Fragaria x ananassa HOM05D001020 ORTHO05D001137 1.4e-06 57.4 47 59.6
FAN16G0714 Fragaria x ananassa HOM05D001020 ORTHO05D001137 1.4e-06 57.4 47 59.6
MD06G1212600 Malus domestica HOM05D001020 ORTHO05D001137 1.4e-06 57.4 44 63.6
MD14G1223900 Malus domestica HOM05D001020 ORTHO05D001137 1.4e-06 57.4 88 43.2
Prupe.1G218700 Prunus persica HOM05D001020 ORTHO05D001137 1.4e-06 57.4 40 65.0
QL03p050225 Quercus lobata HOM05D001020 ORTHO05D001137 1.4e-06 57.4 44 63.6
SMO198G0018 Selaginella moellendorffii HOM05D001020 ORTHO05D001137 1.4e-06 57.4 40 65.0
VMungo1215G0156 Vigna mungo HOM05D001020 ORTHO05D001137 1.4e-06 57.4 44 63.6
CANSAT54G2304 Cannabis sativa HOM05D001020 ORTHO05D001137 1.9e-06 57.0 40 67.5
Carub.0006s1138 Capsella rubella HOM05D001020 ORTHO05D001137 1.9e-06 57.0 44 56.8
Cpa.g.sc188.12 Carica papaya HOM05D001020 ORTHO05D001137 1.9e-06 57.0 40 67.5
Cfa022562 Carpinus fangiana HOM05D001020 ORTHO05D001137 1.9e-06 57.0 44 63.6
Cfa022563 Carpinus fangiana HOM05D001020 ORTHO05D001137 1.9e-06 57.0 44 63.6
COL.COLO4_12825 Corchorus olitorius HOM05D001020 ORTHO05D001137 1.9e-06 57.0 44 63.6
Duzib151G0436 Durio zibethinus HOM05D001020 ORTHO05D001137 1.9e-06 57.0 44 61.4
Thhalv10012951m.g Eutrema salsugineum HOM05D001020 ORTHO05D001137 1.9e-06 57.0 40 60.0
FAN08G2488 Fragaria x ananassa HOM05D001020 ORTHO05D001137 1.9e-06 57.0 40 67.5
Gohir.D03G168966 Gossypium hirsutum HOM05D001020 ORTHO05D001137 1.9e-06 57.0 40 67.5
Gorai.003G179100 Gossypium raimondii HOM05D001020 ORTHO05D001137 1.9e-06 57.0 40 67.5
PSO421G0430 Papaver somniferum HOM05D001020 ORTHO05D001137 1.9e-06 57.0 55 50.9
Rhsim12G0103500 Rhododendron simsii HOM05D001020 ORTHO05D001137 1.9e-06 57.0 40 67.5
A09p28570 Brassica napus HOM05D001020 ORTHO05D001137 2.5e-06 56.6 40 62.5
BraA09t38418Z Brassica rapa HOM05D001020 ORTHO05D001137 2.5e-06 56.6 40 62.5
CSS0009406 Camellia sinensis var. sinensis HOM05D001020 ORTHO05D001137 2.5e-06 56.6 46 60.9
CSS0046099 Camellia sinensis var. sinensis HOM05D001020 ORTHO05D001137 2.5e-06 56.6 44 61.4
Cfa022561 Carpinus fangiana HOM05D001020 ORTHO05D001137 2.5e-06 56.6 44 63.6
Haze_11359 Corylus avellana HOM05D001020 ORTHO05D001137 2.5e-06 56.6 44 63.6
DCAR_002346 Daucus carota HOM05D001020 ORTHO05D001137 2.5e-06 56.6 40 62.5
DCAR_002348 Daucus carota HOM05D001020 ORTHO05D001137 2.5e-06 56.6 40 62.5
FAN14G1037 Fragaria x ananassa HOM05D001020 ORTHO05D001137 2.5e-06 56.6 47 59.6
HanXRQChr06g0175011 Helianthus annuus HOM05D001020 ORTHO05D001137 2.5e-06 56.6 40 67.5
Lj3P771T31 Lonicera japonica HOM05D001020 ORTHO05D001137 2.5e-06 56.6 44 61.4
Lj6P835T13 Lonicera japonica HOM05D001020 ORTHO05D001137 2.5e-06 56.6 44 63.6
AT5G13210 Arabidopsis thaliana HOM05D001020 ORTHO05D001137 3.2e-06 56.2 40 57.5
arahy.Tifrunner.gnm1.ann1.19AV4Q Arachis hypogaea HOM05D001020 ORTHO05D001137 3.2e-06 56.2 44 63.6
arahy.Tifrunner.gnm1.ann1.A5SP47 Arachis hypogaea HOM05D001020 ORTHO05D001137 3.2e-06 56.2 44 63.6
BcaC06g34656 Brassica carinata HOM05D001020 ORTHO05D001137 3.2e-06 56.2 40 65.0
C07p25970 Brassica napus HOM05D001020 ORTHO05D001137 3.2e-06 56.2 40 65.0
BolC7t43124H Brassica oleracea HOM05D001020 ORTHO05D001137 3.2e-06 56.2 40 65.0
CARHR148470 Cardamine hirsuta HOM05D001020 ORTHO05D001137 3.2e-06 56.2 40 57.5
Cc07_g00040 Coffea canephora HOM05D001020 ORTHO05D001137 3.2e-06 56.2 40 62.5
Lj2g0021750 Lotus japonicus HOM05D001020 ORTHO05D001137 3.2e-06 56.2 44 63.6
Lalb_Chr17g0341291 Lupinus albus HOM05D001020 ORTHO05D001137 3.2e-06 56.2 44 63.6
ATR0582G085 Amborella trichopoda HOM05D001020 ORTHO05D001137 4.2e-06 55.8 40 62.5
ATR0582G256 Amborella trichopoda HOM05D001020 ORTHO05D001137 4.2e-06 55.8 40 62.5
arahy.Tifrunner.gnm1.ann1.3R7UBK Arachis hypogaea HOM05D001020 ORTHO05D001137 4.2e-06 55.8 44 63.6
Ciclev10004503m.g Citrus clementina HOM05D001020 ORTHO05D001137 4.2e-06 55.8 44 61.4
DCAR_030720 Daucus carota HOM05D001020 ORTHO05D001137 4.2e-06 55.8 61 45.9
Duzib205G0026 Durio zibethinus HOM05D001020 ORTHO05D001137 4.2e-06 55.8 44 61.4
FvH4_5g20030 Fragaria vesca HOM05D001020 ORTHO05D001137 4.2e-06 55.8 40 65.0
FAN13G3310 Fragaria x ananassa HOM05D001020 ORTHO05D001137 4.2e-06 55.8 40 65.0
FAN18G0822 Fragaria x ananassa HOM05D001020 ORTHO05D001137 4.2e-06 55.8 40 65.0
Gohir.A03G003400 Gossypium hirsutum HOM05D001020 ORTHO05D001137 4.2e-06 55.8 40 65.0
Lj3P771T12 Lonicera japonica HOM05D001020 ORTHO05D001137 4.2e-06 55.8 44 61.4
RcHm_v2.0_Chr2g0136111 Rosa chinensis HOM05D001020 ORTHO05D001137 4.2e-06 55.8 47 57.4
AL6G23820 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 5.5e-06 55.5 40 57.5
BraA10t44562Z Brassica rapa HOM05D001020 ORTHO05D001137 5.5e-06 55.5 40 57.5
CARHR200250 Cardamine hirsuta HOM05D001020 ORTHO05D001137 5.5e-06 55.5 40 62.5
AUR62013455 Chenopodium quinoa HOM05D001020 ORTHO05D001137 5.5e-06 55.5 44 61.4
Ca_04996_v3 Cicer arietinum L. HOM05D001020 ORTHO05D001137 5.5e-06 55.5 44 61.4
COL.COLO4_15986 Corchorus olitorius HOM05D001020 ORTHO05D001137 5.5e-06 55.5 44 59.1
FvH4_5g12490 Fragaria vesca HOM05D001020 ORTHO05D001137 5.5e-06 55.5 44 61.4
FAN18G0521 Fragaria x ananassa HOM05D001020 ORTHO05D001137 5.5e-06 55.5 44 61.4
FAN18G1932 Fragaria x ananassa HOM05D001020 ORTHO05D001137 5.5e-06 55.5 44 61.4
Gohir.A10G107000 Gossypium hirsutum HOM05D001020 ORTHO05D001137 5.5e-06 55.5 44 61.4
Lj2g0005108 Lotus japonicus HOM05D001020 ORTHO05D001137 5.5e-06 55.5 44 61.4
Nn1g01997 Nelumbo nucifera HOM05D001020 ORTHO05D001137 5.5e-06 55.5 44 59.1
Prupe.5G219100 Prunus persica HOM05D001020 ORTHO05D001137 5.5e-06 55.5 44 61.4
RcHm_v2.0_Chr7g0184991 Rosa chinensis HOM05D001020 ORTHO05D001137 5.5e-06 55.5 44 61.4
Sabra03G0120400 Salix brachista HOM05D001020 ORTHO05D001137 5.5e-06 55.5 44 61.4
TPR.G23758 Trifolium pratense HOM05D001020 ORTHO05D001137 5.5e-06 55.5 44 61.4
GSVIVG01027776001 Vitis vinifera HOM05D001020 ORTHO05D001137 5.5e-06 55.5 44 59.1
AT5G43390 Arabidopsis thaliana HOM05D001020 ORTHO05D001137 7.1e-06 55.1 46 54.3
arahy.Tifrunner.gnm1.ann1.I17ZJY Arachis hypogaea HOM05D001020 ORTHO05D001137 7.1e-06 55.1 44 63.6
AUR62007684 Chenopodium quinoa HOM05D001020 ORTHO05D001137 7.1e-06 55.1 44 61.4
Haze_04908 Corylus avellana HOM05D001020 ORTHO05D001137 7.1e-06 55.1 44 61.4
ECA240G4289 Erigeron canadensis HOM05D001020 ORTHO05D001137 7.1e-06 55.1 44 61.4
FAN02G1011 Fragaria x ananassa HOM05D001020 ORTHO05D001137 7.1e-06 55.1 47 55.3
FAN17G0723 Fragaria x ananassa HOM05D001020 ORTHO05D001137 7.1e-06 55.1 47 55.3
Medtr5g045160 Medicago truncatula HOM05D001020 ORTHO05D001137 7.1e-06 55.1 44 61.4
Peaxi162Scf00024g03215 Petunia axillaris HOM05D001020 ORTHO05D001137 7.1e-06 55.1 44 61.4
Psat2g131480 Pisum sativum HOM05D001020 ORTHO05D001137 7.1e-06 55.1 44 61.4
Sp2g08280 Schrenkiella parvula HOM05D001020 ORTHO05D001137 7.1e-06 55.1 40 65.0
TPR.G23749 Trifolium pratense HOM05D001020 ORTHO05D001137 7.1e-06 55.1 44 61.4
Actinidia30602 Actinidia chinensis HOM05D001020 ORTHO05D001137 9.3e-06 54.7 44 61.4
EL10Ac3g05021 Beta vulgaris HOM05D001020 ORTHO05D001137 9.3e-06 54.7 44 63.6
CSS0048799 Camellia sinensis var. sinensis HOM05D001020 ORTHO05D001137 9.3e-06 54.7 44 63.6
AUR62035320 Chenopodium quinoa HOM05D001020 ORTHO05D001137 9.3e-06 54.7 44 63.6
COL.COLO4_29553 Corchorus olitorius HOM05D001020 ORTHO05D001137 9.3e-06 54.7 47 57.4
ECA240G0429 Erigeron canadensis HOM05D001020 ORTHO05D001137 9.3e-06 54.7 44 61.4
PSO478G1194 Papaver somniferum HOM05D001020 ORTHO05D001137 9.3e-06 54.7 45 51.1
QL03p050166 Quercus lobata HOM05D001020 ORTHO05D001137 9.3e-06 54.7 44 61.4
QL06p001797 Quercus lobata HOM05D001020 ORTHO05D001137 9.3e-06 54.7 44 61.4
Rhsim02G0036800 Rhododendron simsii HOM05D001020 ORTHO05D001137 9.3e-06 54.7 44 61.4
THA.LOC104801086 Tarenaya hassleriana HOM05D001020 ORTHO05D001137 9.3e-06 54.7 45 55.6
vmacro15434 Vaccinium macrocarpon HOM05D001020 ORTHO05D001137 9.3e-06 54.7 44 61.4
vmacro15436 Vaccinium macrocarpon HOM05D001020 ORTHO05D001137 9.3e-06 54.7 44 61.4


User provided reference genes

Program Settings