Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb218020 Zea mays HOM05D003316 ORTHO05D003690 4.0e-80 302.0 230 100.0
Zm00001eb052550 Zea mays HOM05D003316 ORTHO05D003690 4.1e-61 238.8 236 76.3
Os03g0660700 Oryza sativa ssp. japonica HOM05D003316 ORTHO05D003690 1.4e-24 117.5 134 65.7
EL10Ac8g18492 Beta vulgaris HOM05D003316 ORTHO05D003690 3.2e-13 79.7 229 27.9
vmacro11707 Vaccinium macrocarpon HOM05D003316 ORTHO05D003690 1.6e-12 77.4 239 33.5
Rhsim06G0241400 Rhododendron simsii HOM05D003316 ORTHO05D003690 2.7e-12 76.6 237 27.8
ECA236G2699 Erigeron canadensis HOM05D003316 ORTHO05D003690 6.0e-12 75.5 121 38.0
Peaxi162Scf00452g00411 Petunia axillaris HOM05D003316 ORTHO05D003690 1.0e-11 74.7 124 49.2
HanXRQChr11g0335691 Helianthus annuus HOM05D003316 ORTHO05D003690 2.3e-11 73.6 123 41.5
Lsat_1_v5_gn_7_110360 Lactuca sativa HOM05D003316 ORTHO05D003690 2.3e-11 73.6 121 52.1
MSTRG.7073 Avicennia marina HOM05D003316 ORTHO05D003690 3.0e-11 73.2 132 34.1
Actinidia35424 Actinidia chinensis HOM05D003316 ORTHO05D003690 3.9e-11 72.8 247 27.9
Lj1A910T5 Lonicera japonica HOM05D003316 ORTHO05D003690 3.9e-11 72.8 240 26.2
unitig_749.g13695 Utricularia gibba HOM05D003316 ORTHO05D003690 5.1e-11 72.4 120 40.0
PGSC0003DMG400022120 Solanum tuberosum HOM05D003316 ORTHO05D003690 6.7e-11 72.0 124 46.8
DCAR_013730 Daucus carota HOM05D003316 ORTHO05D003690 8.7e-11 71.6 124 34.7
Eucgr.F01471 Eucalyptus grandis HOM05D003316 ORTHO05D003690 8.7e-11 71.6 173 31.2
Nitab4.5_0000747g0040 Nicotiana tabacum HOM05D003316 ORTHO05D003690 8.7e-11 71.6 234 26.9
GSVIVG01036804001 Vitis vinifera HOM05D003316 ORTHO05D003690 8.7e-11 71.6 121 35.5
CSS0004609 Camellia sinensis var. sinensis HOM05D003316 ORTHO05D003690 1.1e-10 71.2 238 25.2
SalBow8G1536 Salvia bowleyana HOM05D003316 ORTHO05D003690 1.5e-10 70.9 124 45.2
Hund12435 Selenicereus undatus HOM05D003316 ORTHO05D003690 1.5e-10 70.9 123 34.1
MSTRG.13075 Avicennia marina HOM05D003316 ORTHO05D003690 2.5e-10 70.1 124 57.3
Nitab4.5_0003929g0010 Nicotiana tabacum HOM05D003316 ORTHO05D003690 2.5e-10 70.1 242 26.9
Sc06g0002770 Simmondsia chinensis HOM05D003316 ORTHO05D003690 2.5e-10 70.1 42 71.4
Lj3g0011134 Lotus japonicus HOM05D003316 ORTHO05D003690 4.3e-10 69.3 234 34.6
MSTRG.16103 Avicennia marina HOM05D003316 ORTHO05D003690 5.6e-10 68.9 122 36.1
unitig_37.g12202 Utricularia gibba HOM05D003316 ORTHO05D003690 5.6e-10 68.9 218 38.1
Migut.H01676 Erythranthe guttata HOM05D003316 ORTHO05D003690 7.4e-10 68.6 43 69.8
Migut.M01536 Erythranthe guttata HOM05D003316 ORTHO05D003690 7.4e-10 68.6 122 33.6
Sc09g0007620 Simmondsia chinensis HOM05D003316 ORTHO05D003690 7.4e-10 68.6 213 31.9
Actinidia07371 Actinidia chinensis HOM05D003316 ORTHO05D003690 9.6e-10 68.2 241 26.1
Manes.14G011100 Manihot esculenta HOM05D003316 ORTHO05D003690 9.6e-10 68.2 124 34.7
SGA_v2.0_scaffold49G18186 Striga asiatica HOM05D003316 ORTHO05D003690 9.6e-10 68.2 42 66.7
ATR0763G052 Amborella trichopoda HOM05D003316 ORTHO05D003690 1.3e-09 67.8 220 28.6
Dinv42487 Davidia involucrata HOM05D003316 ORTHO05D003690 1.3e-09 67.8 236 27.5
HPP92_004183 Vanilla planifolia HOM05D003316 ORTHO05D003690 1.3e-09 67.8 123 35.8
CSS0025565 Camellia sinensis var. sinensis HOM05D003316 ORTHO05D003690 1.6e-09 67.4 242 27.7
Ciclev10016512m.g Citrus clementina HOM05D003316 ORTHO05D003690 1.6e-09 67.4 123 31.7
Duzib160G0233 Durio zibethinus HOM05D003316 ORTHO05D003690 1.6e-09 67.4 125 38.4
Gohir.A10G048700 Gossypium hirsutum HOM05D003316 ORTHO05D003690 1.6e-09 67.4 123 48.8
Gohir.D10G049400 Gossypium hirsutum HOM05D003316 ORTHO05D003690 1.6e-09 67.4 123 49.6
Gorai.011G052900 Gossypium raimondii HOM05D003316 ORTHO05D003690 1.6e-09 67.4 123 49.6
Cpa.g.c44098 Carica papaya HOM05D003316 ORTHO05D003690 2.1e-09 67.0 124 35.5
AUR62010409 Chenopodium quinoa HOM05D003316 ORTHO05D003690 2.1e-09 67.0 42 64.3
DCAR_016833 Daucus carota HOM05D003316 ORTHO05D003690 2.8e-09 66.6 121 41.3
Dinv19599 Davidia involucrata HOM05D003316 ORTHO05D003690 2.8e-09 66.6 237 27.4
Eucgr.F04447 Eucalyptus grandis HOM05D003316 ORTHO05D003690 2.8e-09 66.6 124 38.7
Hma1.2p1_0151F.1_g067420 Hydrangea macrophylla HOM05D003316 ORTHO05D003690 2.8e-09 66.6 244 33.2
Potri.007G067300 Populus trichocarpa HOM05D003316 ORTHO05D003690 2.8e-09 66.6 126 34.9
GSVIVG01038001001 Vitis vinifera HOM05D003316 ORTHO05D003690 2.8e-09 66.6 123 51.2
MSTRG.14558 Avicennia marina HOM05D003316 ORTHO05D003690 3.7e-09 66.2 42 64.3
AUR62016808 Chenopodium quinoa HOM05D003316 ORTHO05D003690 3.7e-09 66.2 42 64.3
HanXRQChr13g0409371 Helianthus annuus HOM05D003316 ORTHO05D003690 3.7e-09 66.2 42 69.0
Nn7g37833 Nelumbo nucifera HOM05D003316 ORTHO05D003690 4.8e-09 65.9 237 30.0
Sabra11G0146100 Salix brachista HOM05D003316 ORTHO05D003690 6.2e-09 65.5 44 59.1
THA.LOC104808128 Tarenaya hassleriana HOM05D003316 ORTHO05D003690 6.2e-09 65.5 123 32.5
Aa31LG4G1840 Aethionema arabicum HOM05D003316 ORTHO05D003690 8.1e-09 65.1 126 31.7
Duzib192G0114 Durio zibethinus HOM05D003316 ORTHO05D003690 8.1e-09 65.1 120 33.3
Lalb_Chr01g0007091 Lupinus albus HOM05D003316 ORTHO05D003690 8.1e-09 65.1 124 31.5
CsaV3_6G013590 Cucumis sativus L. HOM05D003316 ORTHO05D003690 1.1e-08 64.7 123 41.5
COL.COLO4_30905 Corchorus olitorius HOM05D003316 ORTHO05D003690 1.4e-08 64.3 126 45.2
Duzib235G1001 Durio zibethinus HOM05D003316 ORTHO05D003690 1.4e-08 64.3 123 32.5
Oeu051683.1 Olea europaea HOM05D003316 ORTHO05D003690 1.4e-08 64.3 124 52.4
Solyc07g066570.4 Solanum lycopersicum HOM05D003316 ORTHO05D003690 1.4e-08 64.3 122 36.9
HPP92_026353 Vanilla planifolia HOM05D003316 ORTHO05D003690 1.4e-08 64.3 237 29.5
AL1G28660 Arabidopsis lyrata HOM05D003316 ORTHO05D003690 1.8e-08 63.9 119 31.9
CANSAT80G0009 Cannabis sativa HOM05D003316 ORTHO05D003690 1.8e-08 63.9 122 66.4
CiPaw.11G063000 Carya illinoinensis HOM05D003316 ORTHO05D003690 1.8e-08 63.9 124 33.1
Gohir.D01G081200 Gossypium hirsutum HOM05D003316 ORTHO05D003690 1.8e-08 63.9 125 33.6
Gorai.002G106100 Gossypium raimondii HOM05D003316 ORTHO05D003690 1.8e-08 63.9 125 33.6
unitig_32.g11082 Utricularia gibba HOM05D003316 ORTHO05D003690 1.8e-08 63.9 123 32.5
MELO3C019643.2 Cucumis melo HOM05D003316 ORTHO05D003690 2.4e-08 63.5 123 40.7
Duzib213G0545 Durio zibethinus HOM05D003316 ORTHO05D003690 2.4e-08 63.5 124 33.1
TAR627G0616 Trochodendron aralioides HOM05D003316 ORTHO05D003690 2.4e-08 63.5 236 33.9
Medtr2g066700 Medicago truncatula HOM05D003316 ORTHO05D003690 3.1e-08 63.2 237 26.6
Sed0025744 Sechium edule HOM05D003316 ORTHO05D003690 3.1e-08 63.2 124 37.1
TWI38G0778 Tripterygium wilfordii HOM05D003316 ORTHO05D003690 3.1e-08 63.2 123 33.3
Aqoxy1G01502 Aquilegia oxysepala HOM05D003316 ORTHO05D003690 4.0e-08 62.8 128 46.9
Aqoxy1G01506 Aquilegia oxysepala HOM05D003316 ORTHO05D003690 4.0e-08 62.8 128 46.9
Haze_07827 Corylus avellana HOM05D003316 ORTHO05D003690 4.0e-08 62.8 124 32.3
Nitab4.5_0008429g0010 Nicotiana tabacum HOM05D003316 ORTHO05D003690 4.0e-08 62.8 44 63.6
Potri.011G153600 Populus trichocarpa HOM05D003316 ORTHO05D003690 4.0e-08 62.8 119 31.1
ClCG02G018610 Citrullus lanatus HOM05D003316 ORTHO05D003690 5.3e-08 62.4 123 39.8
AL2G39640 Arabidopsis lyrata HOM05D003316 ORTHO05D003690 6.9e-08 62.0 130 30.0
CDE06G2584 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 6.9e-08 62.0 133 33.1
Carub.0001s1625 Capsella rubella HOM05D003316 ORTHO05D003690 9.0e-08 61.6 119 31.1
CARHR072810 Cardamine hirsuta HOM05D003316 ORTHO05D003690 9.0e-08 61.6 175 25.7
Lalb_Chr03g0031631 Lupinus albus HOM05D003316 ORTHO05D003690 9.0e-08 61.6 121 33.9
Lalb_Chr25g0284791 Lupinus albus HOM05D003316 ORTHO05D003690 9.0e-08 61.6 124 32.3
Atru.chr1.123 Acer truncatum HOM05D003316 ORTHO05D003690 1.2e-07 61.2 124 32.3
ClCG09G022660 Citrullus lanatus HOM05D003316 ORTHO05D003690 1.2e-07 61.2 124 41.9
QL04p080199 Quercus lobata HOM05D003316 ORTHO05D003690 1.2e-07 61.2 124 31.5
SGA_v2.0_scaffold239G44036 Striga asiatica HOM05D003316 ORTHO05D003690 1.2e-07 61.2 260 33.5
Carub.0002s2603 Capsella rubella HOM05D003316 ORTHO05D003690 1.5e-07 60.8 130 30.0
CDE02G3419 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 1.5e-07 60.8 124 33.1
Cc05_g16270 Coffea canephora HOM05D003316 ORTHO05D003690 1.5e-07 60.8 259 27.4
Gohir.A01G096900 Gossypium hirsutum HOM05D003316 ORTHO05D003690 1.5e-07 60.8 125 32.8
QL04p080015 Quercus lobata HOM05D003316 ORTHO05D003690 1.5e-07 60.8 42 61.9
Aa31LG7G1040 Aethionema arabicum HOM05D003316 ORTHO05D003690 2.0e-07 60.5 129 29.5
Cfa022970 Carpinus fangiana HOM05D003316 ORTHO05D003690 2.0e-07 60.5 239 31.0
Ciclev10005652m.g Citrus clementina HOM05D003316 ORTHO05D003690 2.0e-07 60.5 42 64.3
COL.COLO4_07011 Corchorus olitorius HOM05D003316 ORTHO05D003690 2.0e-07 60.5 124 32.3
Potri.005G096800 Populus trichocarpa HOM05D003316 ORTHO05D003690 2.0e-07 60.5 126 46.8
AT1G16500 Arabidopsis thaliana HOM05D003316 ORTHO05D003690 2.6e-07 60.1 119 31.1
MD10G1205200 Malus domestica HOM05D003316 ORTHO05D003690 2.6e-07 60.1 242 31.0
Potri.001G446800 Populus trichocarpa HOM05D003316 ORTHO05D003690 2.6e-07 60.1 120 30.0
QL04p080175 Quercus lobata HOM05D003316 ORTHO05D003690 2.6e-07 60.1 42 61.9
Sp5g34220 Schrenkiella parvula HOM05D003316 ORTHO05D003690 2.6e-07 60.1 128 31.2
unitig_578.g16328 Utricularia gibba HOM05D003316 ORTHO05D003690 2.6e-07 60.1 44 61.4
unitig_8.g4755 Utricularia gibba HOM05D003316 ORTHO05D003690 2.6e-07 60.1 44 59.1
arahy.Tifrunner.gnm1.ann1.JV1AYU Arachis hypogaea HOM05D003316 ORTHO05D003690 3.4e-07 59.7 42 61.9
arahy.Tifrunner.gnm1.ann1.Q78MS7 Arachis hypogaea HOM05D003316 ORTHO05D003690 3.4e-07 59.7 42 61.9
FAN11G0988 Fragaria x ananassa HOM05D003316 ORTHO05D003690 3.4e-07 59.7 248 28.2
Glyma.15G259100 Glycine max HOM05D003316 ORTHO05D003690 3.4e-07 59.7 124 30.6
Gohir.A13G122600 Gossypium hirsutum HOM05D003316 ORTHO05D003690 3.4e-07 59.7 244 27.0
SHI21400 Sapria himalayana HOM05D003316 ORTHO05D003690 3.4e-07 59.7 128 33.6
Thecc.06G134000 Theobroma cacao HOM05D003316 ORTHO05D003690 3.4e-07 59.7 250 28.8
Cpa.g.sc136.61 Carica papaya HOM05D003316 ORTHO05D003690 4.5e-07 59.3 41 58.5
ECA240G0877 Erigeron canadensis HOM05D003316 ORTHO05D003690 4.5e-07 59.3 41 61.0
FAN25G0335 Fragaria x ananassa HOM05D003316 ORTHO05D003690 4.5e-07 59.3 247 27.5
Sed0011738 Sechium edule HOM05D003316 ORTHO05D003690 4.5e-07 59.3 123 37.4
FvH4_3g15360 Fragaria vesca HOM05D003316 ORTHO05D003690 5.8e-07 58.9 248 28.2
FAN16G3516 Fragaria x ananassa HOM05D003316 ORTHO05D003690 5.8e-07 58.9 248 28.2
Phvul.005G051100 Phaseolus vulgaris HOM05D003316 ORTHO05D003690 5.8e-07 58.9 238 26.1
Prupe.4G136500 Prunus persica HOM05D003316 ORTHO05D003690 5.8e-07 58.9 240 34.2
Sp1g14650 Schrenkiella parvula HOM05D003316 ORTHO05D003690 5.8e-07 58.9 44 52.3
CARHR016970 Cardamine hirsuta HOM05D003316 ORTHO05D003690 7.6e-07 58.5 119 29.4
Gohir.D13G126700 Gossypium hirsutum HOM05D003316 ORTHO05D003690 7.6e-07 58.5 244 25.8
Gorai.013G141800 Gossypium raimondii HOM05D003316 ORTHO05D003690 7.6e-07 58.5 244 25.8
Sabra16G0301800 Salix brachista HOM05D003316 ORTHO05D003690 7.6e-07 58.5 41 58.5
TPR.G33853 Trifolium pratense HOM05D003316 ORTHO05D003690 7.6e-07 58.5 237 25.7
Duzib187G1768 Durio zibethinus HOM05D003316 ORTHO05D003690 1.0e-06 58.2 124 31.5
FAN21G3518 Fragaria x ananassa HOM05D003316 ORTHO05D003690 1.0e-06 58.2 248 27.8
Sopen07g034730 Solanum pennellii HOM05D003316 ORTHO05D003690 1.0e-06 58.2 245 29.8
VMungo1080G0561 Vigna mungo HOM05D003316 ORTHO05D003690 1.0e-06 58.2 238 27.3
BcaC05g25563 Brassica carinata HOM05D003316 ORTHO05D003690 1.3e-06 57.8 42 57.1
CsaV3_7G022850 Cucumis sativus L. HOM05D003316 ORTHO05D003690 1.3e-06 57.8 231 29.0
MD05G1223700 Malus domestica HOM05D003316 ORTHO05D003690 1.3e-06 57.8 201 29.9
Psat1g005840 Pisum sativum HOM05D003316 ORTHO05D003690 1.3e-06 57.8 232 33.6
Sed0001262 Sechium edule HOM05D003316 ORTHO05D003690 1.3e-06 57.8 240 27.5
Sed0022394 Sechium edule HOM05D003316 ORTHO05D003690 1.3e-06 57.8 125 30.4
C05p14730 Brassica napus HOM05D003316 ORTHO05D003690 1.7e-06 57.4 127 29.9
BolC5t30193H Brassica oleracea HOM05D003316 ORTHO05D003690 1.7e-06 57.4 127 29.9
MELO3C012614.2 Cucumis melo HOM05D003316 ORTHO05D003690 1.7e-06 57.4 232 30.6
MBI02_g21020_MAGBIO Magnolia biondii HOM05D003316 ORTHO05D003690 1.7e-06 57.4 222 27.0
THA.LOC104813611 Tarenaya hassleriana HOM05D003316 ORTHO05D003690 1.7e-06 57.4 131 28.2
TWI38G1355 Tripterygium wilfordii HOM05D003316 ORTHO05D003690 1.7e-06 57.4 121 31.4
Atru.chr10.639 Acer truncatum HOM05D003316 ORTHO05D003690 2.2e-06 57.0 120 30.0
AT1G79160 Arabidopsis thaliana HOM05D003316 ORTHO05D003690 2.2e-06 57.0 131 29.0
CDE02G2536 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 2.2e-06 57.0 42 59.5
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 2.2e-06 57.0 42 59.5
Lalb_Chr20g0108611 Lupinus albus HOM05D003316 ORTHO05D003690 2.2e-06 57.0 237 24.9
BcaC08g45373 Brassica carinata HOM05D003316 ORTHO05D003690 2.9e-06 56.6 44 54.5
C06p30040 Brassica napus HOM05D003316 ORTHO05D003690 2.9e-06 56.6 44 54.5
BolC6t38165H Brassica oleracea HOM05D003316 ORTHO05D003690 2.9e-06 56.6 44 54.5
BcaB02g08670 Brassica carinata HOM05D003316 ORTHO05D003690 3.8e-06 56.2 174 30.5
Thhalv10008548m.g Eutrema salsugineum HOM05D003316 ORTHO05D003690 3.8e-06 56.2 42 57.1
Lj3g0011998 Lotus japonicus HOM05D003316 ORTHO05D003690 3.8e-06 56.2 236 35.6
Manes.06G175000 Manihot esculenta HOM05D003316 ORTHO05D003690 3.8e-06 56.2 124 53.2
RcHm_v2.0_Chr5g0025801 Rosa chinensis HOM05D003316 ORTHO05D003690 3.8e-06 56.2 246 30.1
BcaB02g06634 Brassica carinata HOM05D003316 ORTHO05D003690 4.9e-06 55.8 42 54.8
BcaC05g25564 Brassica carinata HOM05D003316 ORTHO05D003690 4.9e-06 55.8 42 54.8
A06p12480 Brassica napus HOM05D003316 ORTHO05D003690 4.9e-06 55.8 42 54.8
BraA06t24411Z Brassica rapa HOM05D003316 ORTHO05D003690 4.9e-06 55.8 42 54.8
Thecc.07G169200 Theobroma cacao HOM05D003316 ORTHO05D003690 4.9e-06 55.8 42 59.5
CAN.G492.73 Capsicum annuum HOM05D003316 ORTHO05D003690 8.4e-06 55.1 121 59.5


User provided reference genes

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