Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 4.8e-156 554.7 323 100.0
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 2.4e-139 499.2 323 91.0
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 6.9e-123 444.5 325 85.2
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.1e-83 314.3 288 62.8
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.1e-83 314.3 290 63.1
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 6.1e-79 298.5 283 59.0
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 4.0e-78 295.8 281 60.9
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 4.0e-78 295.8 302 57.9
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 8.9e-78 294.7 293 59.4
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 7.5e-77 291.6 277 60.3
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 1.3e-76 290.8 278 58.3
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 1.7e-76 290.4 250 66.0
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 3.2e-75 286.2 280 59.3
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 3.9e-73 279.3 287 57.5
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 5.0e-73 278.9 309 55.7
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 5.6e-72 275.4 283 56.9
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.2e-71 274.2 278 59.4
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 8.0e-71 271.6 285 56.5
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 3.1e-70 269.6 316 52.2
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 3.1e-70 269.6 316 52.2
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 6.8e-70 268.5 292 53.8
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 1.5e-69 267.3 287 53.0
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 4.4e-69 265.8 290 55.2
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 4.4e-69 265.8 289 54.3
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 5.8e-69 265.4 289 54.3
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 7.5e-69 265.0 289 56.4
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 7.5e-69 265.0 293 54.9
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 7.5e-69 265.0 282 55.7
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.2e-68 263.5 294 56.5
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 6.4e-68 261.9 294 55.8
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 6.4e-68 261.9 294 55.8
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 6.4e-68 261.9 287 56.8
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 8.3e-68 261.5 294 56.1
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 1.9e-67 260.4 289 55.7
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.9e-67 260.4 280 55.0
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 2.4e-67 260.0 294 55.8
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 4.1e-67 259.2 279 54.1
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 1.6e-66 257.3 294 52.4
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 2.7e-66 256.5 298 54.4
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 3.5e-66 256.1 283 54.1
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 4.6e-66 255.8 283 53.7
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 7.8e-66 255.0 279 53.4
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 7.8e-66 255.0 306 52.0
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 1.0e-65 254.6 301 53.2
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 3.9e-65 252.7 289 55.0
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 6.6e-65 251.9 287 53.0
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 6.6e-65 251.9 284 52.8
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 8.6e-65 251.5 278 52.9
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 1.9e-64 250.4 233 59.7
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 1.9e-64 250.4 287 54.4
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 2.5e-64 250.0 284 52.5
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 2.5e-64 250.0 323 49.8
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 2.5e-64 250.0 284 53.5
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 2.5e-64 250.0 294 53.1
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 3.3e-64 249.6 285 53.0
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 3.3e-64 249.6 287 54.4
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 4.3e-64 249.2 287 55.4
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 4.3e-64 249.2 287 55.4
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 2.1e-63 246.9 303 52.1
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 2.8e-63 246.5 277 54.2
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 2.8e-63 246.5 288 52.4
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 3.6e-63 246.1 287 50.5
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 4.7e-63 245.7 288 52.4
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 1.1e-62 244.6 298 51.0
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 1.1e-62 244.6 291 51.9
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.1e-62 244.6 300 49.7
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 1.4e-62 244.2 288 53.5
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 2.3e-62 243.4 296 53.7
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.3e-62 243.4 277 53.1
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 3.1e-62 243.0 289 52.9
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 4.0e-62 242.7 297 51.2
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 5.2e-62 242.3 286 52.8
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 6.8e-62 241.9 282 53.2
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 2.0e-61 240.4 277 53.8
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 2.0e-61 240.4 285 51.9
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 2.0e-61 240.4 287 50.9
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 3.4e-61 239.6 296 52.0
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 5.8e-61 238.8 283 50.5
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 9.9e-61 238.0 283 50.2
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 9.9e-61 238.0 289 51.2
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 9.9e-61 238.0 289 49.8
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.3e-60 237.7 303 48.2
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 1.7e-60 237.3 285 49.5
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 1.7e-60 237.3 295 50.5
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 2.2e-60 236.9 281 52.3
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.9e-60 236.5 273 50.2
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 4.9e-60 235.7 271 54.6
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 4.9e-60 235.7 296 51.0
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 6.4e-60 235.3 292 50.7
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 8.3e-60 235.0 282 48.9
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 1.9e-59 233.8 292 50.3
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 3.2e-59 233.0 269 52.4
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 7.1e-59 231.9 287 50.5
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 7.1e-59 231.9 277 53.4
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 7.1e-59 231.9 286 51.0
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 1.2e-58 231.1 287 50.9
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 1.6e-58 230.7 282 50.4
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 2.1e-58 230.3 290 53.4
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 2.7e-58 229.9 283 51.6
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 7.8e-58 228.4 293 49.1
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 7.8e-58 228.4 294 50.7
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 7.8e-58 228.4 307 48.2
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 1.3e-57 227.6 289 50.2
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 2.3e-57 226.9 274 51.1
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 3.0e-57 226.5 280 50.4
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 3.9e-57 226.1 278 50.0
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 5.1e-57 225.7 284 48.9
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 1.1e-56 224.6 292 49.0
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 1.1e-56 224.6 266 52.3
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 2.5e-56 223.4 288 50.0
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 3.3e-56 223.0 355 42.3
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 5.6e-56 222.2 281 49.5
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 9.5e-56 221.5 282 51.4
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 9.5e-56 221.5 294 50.3
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 3.6e-55 219.5 287 47.7
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 4.7e-55 219.2 288 49.7
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 4.7e-55 219.2 288 47.9
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 8.1e-55 218.4 306 47.4
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 7.6e-53 211.8 264 50.0
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.9e-52 209.9 223 56.5
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 6.4e-52 208.8 167 67.1
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 1.9e-51 207.2 287 46.7
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 9.2e-51 204.9 221 56.6
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 1.6e-50 204.1 301 45.5
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.1e-50 203.8 221 56.1
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 4.6e-50 202.6 196 55.6
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 2.3e-49 200.3 161 62.7
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 3.1e-46 189.9 248 50.4
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 4.0e-46 189.5 163 60.7
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 2.0e-45 187.2 262 45.4
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 3.4e-45 186.4 119 75.6
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 3.4e-45 186.4 282 44.7
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 4.4e-45 186.0 168 58.9
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 4.4e-45 186.0 268 48.1
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 6.4e-44 182.2 178 57.9
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.9e-43 180.6 282 44.0
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.0e-41 174.9 275 44.0
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.3e-41 174.5 227 48.0
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.5e-40 170.2 162 56.2
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 6.2e-39 165.6 277 42.6
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 1.1e-38 164.9 273 44.0
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.2e-37 161.4 278 40.3
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 7.1e-35 152.1 269 41.6
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 6.0e-34 149.1 177 47.5
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 3.0e-33 146.7 188 48.9
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 3.9e-33 146.4 117 59.8
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 6.2e-31 139.0 295 36.9
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 9.0e-30 135.2 123 57.7
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 3.8e-28 129.8 131 57.3
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 1.1e-27 128.3 270 37.0
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 3.2e-27 126.7 166 42.8
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 3.2e-19 100.1 79 65.8
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 1.0e-17 95.1 171 40.4
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 2.6e-13 80.5 150 44.0
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 3.8e-12 76.6 130 47.7
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 3.2e-11 73.6 153 38.6
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 3.0e-09 67.0 132 39.4
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 5.7e-08 62.8 54 57.4
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 3.7e-07 60.1 104 44.2
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 4.1e-06 56.6 115 39.1


User provided reference genes

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