Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb216960 Zea mays HOM05D002914 ORTHO05D003196 1.3e-50 203.0 115 100.0
Os03g0696150 Oryza sativa ssp. japonica HOM05D002914 ORTHO05D003196 4.6e-21 104.8 119 54.6
Dinv18053 Davidia involucrata HOM05D002914 ORTHO05D003196 8.8e-12 73.9 87 48.3
Aqoxy2G00187 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 1.3e-10 70.1 77 45.5
FAN09G0984 Fragaria x ananassa HOM05D002914 ORTHO05D003196 2.2e-10 69.3 114 38.6
RcHm_v2.0_Chr3g0481701 Rosa chinensis HOM05D002914 ORTHO05D003196 2.8e-10 68.9 78 44.9
TAR623G0040 Trochodendron aralioides HOM05D002914 ORTHO05D003196 2.8e-10 68.9 77 45.5
FvH4_6g23590 Fragaria vesca HOM05D002914 ORTHO05D003196 3.7e-10 68.6 114 38.6
Prupe.7G063700 Prunus persica HOM05D002914 ORTHO05D003196 3.7e-10 68.6 78 47.4
Medtr7g091830 Medicago truncatula HOM05D002914 ORTHO05D003196 4.8e-10 68.2 73 45.2
Phvul.001G135000 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 4.8e-10 68.2 62 48.4
Manes.09G023600 Manihot esculenta HOM05D002914 ORTHO05D003196 6.3e-10 67.8 78 44.9
Sp5g05100 Schrenkiella parvula HOM05D002914 ORTHO05D003196 6.3e-10 67.8 78 44.9
VMungo1383G1568 Vigna mungo HOM05D002914 ORTHO05D003196 8.2e-10 67.4 60 50.0
CSS0032433 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 1.1e-09 67.0 87 43.7
Ah.04g151670 Amaranthus hybridus HOM05D002914 ORTHO05D003196 1.4e-09 66.6 58 55.2
EL10Ac3g07073 Beta vulgaris HOM05D002914 ORTHO05D003196 1.4e-09 66.6 58 53.4
Hma1.2p1_1847F.1_g305210 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 1.4e-09 66.6 63 49.2
Nn2g15303 Nelumbo nucifera HOM05D002914 ORTHO05D003196 1.4e-09 66.6 73 43.8
TWI74G1608 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 1.8e-09 66.2 58 51.7
Lalb_Chr20g0110761 Lupinus albus HOM05D002914 ORTHO05D003196 2.4e-09 65.9 59 50.8
BcaB02g08314 Brassica carinata HOM05D002914 ORTHO05D003196 3.1e-09 65.5 58 51.7
A04p03090 Brassica napus HOM05D002914 ORTHO05D003196 3.1e-09 65.5 58 51.7
BraA04t16032Z Brassica rapa HOM05D002914 ORTHO05D003196 3.1e-09 65.5 58 51.7
Ciclev10006230m.g Citrus clementina HOM05D002914 ORTHO05D003196 3.1e-09 65.5 74 56.8
SGA_v2.0_scaffold105G30420 Striga asiatica HOM05D002914 ORTHO05D003196 3.1e-09 65.5 76 46.1
BcaC08g44849 Brassica carinata HOM05D002914 ORTHO05D003196 4.1e-09 65.1 58 53.4
AL5G39080 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 5.3e-09 64.7 58 50.0
AT3G57500 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 5.3e-09 64.7 58 50.0
Carub.0005s2434 Capsella rubella HOM05D002914 ORTHO05D003196 5.3e-09 64.7 58 50.0
Thhalv10006376m.g Eutrema salsugineum HOM05D002914 ORTHO05D003196 5.3e-09 64.7 58 50.0
Glyma.19G140500 Glycine max HOM05D002914 ORTHO05D003196 5.3e-09 64.7 59 49.2
ATR0332G006 Amborella trichopoda HOM05D002914 ORTHO05D003196 6.9e-09 64.3 56 51.8
BcaC07g40375 Brassica carinata HOM05D002914 ORTHO05D003196 6.9e-09 64.3 58 48.3
A09p50360 Brassica napus HOM05D002914 ORTHO05D003196 6.9e-09 64.3 58 48.3
C08p33030 Brassica napus HOM05D002914 ORTHO05D003196 6.9e-09 64.3 58 48.3
BolC8t50903H Brassica oleracea HOM05D002914 ORTHO05D003196 6.9e-09 64.3 58 48.3
BraA09t40488Z Brassica rapa HOM05D002914 ORTHO05D003196 6.9e-09 64.3 58 48.3
Lj1g0015891 Lotus japonicus HOM05D002914 ORTHO05D003196 6.9e-09 64.3 69 44.9
Duzib093G1261 Durio zibethinus HOM05D002914 ORTHO05D003196 9.1e-09 63.9 76 39.5
TPR.G27766 Trifolium pratense HOM05D002914 ORTHO05D003196 9.1e-09 63.9 60 46.7
MD14G1070500 Malus domestica HOM05D002914 ORTHO05D003196 1.2e-08 63.5 71 43.7
Potri.006G052500 Populus trichocarpa HOM05D002914 ORTHO05D003196 1.2e-08 63.5 80 42.5
CANSAT80G1635 Cannabis sativa HOM05D002914 ORTHO05D003196 1.5e-08 63.2 58 48.3
MBI02_g05666_MAGBIO Magnolia biondii HOM05D002914 ORTHO05D003196 1.5e-08 63.2 68 60.3
Peaxi162Scf00493g00035 Petunia axillaris HOM05D002914 ORTHO05D003196 2.0e-08 62.8 63 46.0
Psat3g072240 Pisum sativum HOM05D002914 ORTHO05D003196 2.0e-08 62.8 59 45.8
Sc13g0001830 Simmondsia chinensis HOM05D002914 ORTHO05D003196 2.0e-08 62.8 73 45.2
Atru.chr1.1072 Acer truncatum HOM05D002914 ORTHO05D003196 2.6e-08 62.4 58 50.0
CARHR167710 Cardamine hirsuta HOM05D002914 ORTHO05D003196 2.6e-08 62.4 58 48.3
Nn7g36239 Nelumbo nucifera HOM05D002914 ORTHO05D003196 2.6e-08 62.4 78 46.2
BcaB02g07599 Brassica carinata HOM05D002914 ORTHO05D003196 4.5e-08 61.6 75 45.3
Ca_08467_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 4.5e-08 61.6 71 43.7
Thecc.05G158000 Theobroma cacao HOM05D002914 ORTHO05D003196 4.5e-08 61.6 73 39.7
QL07p000101 Quercus lobata HOM05D002914 ORTHO05D003196 5.9e-08 61.2 73 49.3
Cpa.g.sc92.38 Carica papaya HOM05D002914 ORTHO05D003196 7.7e-08 60.8 59 47.5
Cfa016832 Carpinus fangiana HOM05D002914 ORTHO05D003196 7.7e-08 60.8 58 48.3
CiPaw.09G037100 Carya illinoinensis HOM05D002914 ORTHO05D003196 1.0e-07 60.5 95 40.0
ECA247G2219 Erigeron canadensis HOM05D000031 ORTHO05D000003 1.0e-07 60.5 65 55.4
Gohir.A09G123100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.0e-07 60.5 66 42.4
Gohir.D09G120100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.0e-07 60.5 66 42.4
Gorai.006G137500 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.0e-07 60.5 66 42.4
Oeu000823.1 Olea europaea HOM05D002914 ORTHO05D003196 1.3e-07 60.1 72 41.7
A07p23450 Brassica napus HOM05D002914 ORTHO05D003196 1.7e-07 59.7 58 50.0
COL.COLO4_28237 Corchorus olitorius HOM05D002914 ORTHO05D003196 1.7e-07 59.7 72 38.9
Solyc04g015540.1 Solanum lycopersicum HOM05D002914 ORTHO05D003196 1.7e-07 59.7 64 43.8
Sopen04g007610 Solanum pennellii HOM05D002914 ORTHO05D003196 1.7e-07 59.7 64 43.8
PGSC0003DMG400027270 Solanum tuberosum HOM05D002914 ORTHO05D003196 1.7e-07 59.7 64 42.2
Manes.08G049900 Manihot esculenta HOM05D002914 ORTHO05D003196 2.2e-07 59.3 84 38.1
Migut.K00083 Erythranthe guttata HOM05D002914 ORTHO05D003196 2.9e-07 58.9 77 41.6
Gorai.002G147700 Gossypium raimondii HOM05D002914 ORTHO05D003196 5.0e-07 58.2 72 41.7
Gohir.D01G121050 Gossypium hirsutum HOM05D002914 ORTHO05D003196 8.5e-07 57.4 72 41.7
THA.LOC104802149 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 1.1e-06 57.0 59 45.8
BcaC02g09941 Brassica carinata HOM05D002914 ORTHO05D003196 1.4e-06 56.6 70 42.9
C04p34950 Brassica napus HOM05D002914 ORTHO05D003196 1.4e-06 56.6 70 42.9
BolC4t25049H Brassica oleracea HOM05D002914 ORTHO05D003196 1.4e-06 56.6 70 42.9
Gohir.A01G132111 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.4e-06 56.6 72 40.3
Lsat_1_v5_gn_9_28661 Lactuca sativa HOM05D002914 ORTHO05D003196 1.4e-06 56.6 57 43.9
Nitab4.5_0005892g0010 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.4e-06 56.6 60 45.0
Actinidia17240 Actinidia chinensis HOM05D002914 ORTHO05D003196 2.5e-06 55.8 38 63.2
DCAR_020485 Daucus carota HOM05D002914 ORTHO05D003196 2.5e-06 55.8 76 52.6
Duzib128G0409 Durio zibethinus HOM05D002914 ORTHO05D003196 2.5e-06 55.8 78 35.9
HPP92_023573 Vanilla planifolia HOM05D002914 ORTHO05D003196 3.2e-06 55.5 65 55.4
ClCG04G003270 Citrullus lanatus HOM05D002914 ORTHO05D003196 9.4e-06 53.9 80 40.0
Lsat_1_v5_gn_5_161660 Lactuca sativa HOM05D002914 ORTHO05D003196 9.4e-06 53.9 60 41.7


User provided reference genes

Program Settings