Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 3.3e-75 285.0 151 100.0
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 3.0e-68 261.9 130 98.5
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 3.2e-62 241.9 131 89.3
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 9.0e-49 197.2 130 72.3
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 1.2e-48 196.8 128 73.4
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 1.2e-48 196.8 95 98.9
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 1.2e-48 196.8 95 98.9
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 2.6e-48 195.7 128 71.9
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 3.4e-48 195.3 130 71.5
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 3.4e-48 195.3 128 70.3
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 5.8e-48 194.5 128 70.3
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 5.8e-48 194.5 128 70.3
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 7.6e-48 194.1 126 71.4
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 7.6e-48 194.1 127 72.4
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 1.0e-47 193.7 95 97.9
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 1.3e-47 193.4 128 69.5
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 2.2e-47 192.6 130 72.3
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 2.2e-47 192.6 128 71.1
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 2.2e-47 192.6 130 68.5
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 2.9e-47 192.2 130 70.8
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 3.8e-47 191.8 128 69.5
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 3.8e-47 191.8 129 71.3
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 3.8e-47 191.8 128 70.3
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 4.9e-47 191.4 129 72.1
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 4.9e-47 191.4 129 69.8
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 6.5e-47 191.0 129 71.3
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 8.4e-47 190.7 129 69.8
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 8.4e-47 190.7 130 70.0
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 1.1e-46 190.3 126 71.4
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 1.1e-46 190.3 126 71.4
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 1.1e-46 190.3 129 70.5
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 1.1e-46 190.3 130 70.8
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.1e-46 190.3 130 70.8
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.1e-46 190.3 128 69.5
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 1.4e-46 189.9 129 71.3
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 1.4e-46 189.9 129 71.3
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.4e-46 189.9 130 70.8
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 1.4e-46 189.9 130 69.2
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 1.9e-46 189.5 130 70.8
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 1.9e-46 189.5 127 69.3
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 1.9e-46 189.5 129 69.0
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 2.5e-46 189.1 127 70.1
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 2.5e-46 189.1 129 69.8
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 2.5e-46 189.1 130 68.5
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 2.5e-46 189.1 129 70.5
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 2.5e-46 189.1 131 71.0
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 2.5e-46 189.1 128 70.3
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 2.5e-46 189.1 126 71.4
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 3.2e-46 188.7 127 71.7
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 3.2e-46 188.7 129 69.8
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 3.2e-46 188.7 127 71.7
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 3.2e-46 188.7 129 71.3
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 3.2e-46 188.7 130 69.2
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 3.2e-46 188.7 130 69.2
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 4.2e-46 188.3 126 70.6
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 4.2e-46 188.3 126 70.6
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 4.2e-46 188.3 130 67.7
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 4.2e-46 188.3 129 69.8
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 5.5e-46 188.0 129 69.8
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 5.5e-46 188.0 129 69.8
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 5.5e-46 188.0 129 69.8
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 7.1e-46 187.6 127 70.1
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 7.1e-46 187.6 128 69.5
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 7.1e-46 187.6 130 67.7
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 7.1e-46 187.6 130 67.7
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 7.1e-46 187.6 129 69.8
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 7.1e-46 187.6 129 69.0
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 9.3e-46 187.2 127 70.9
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 9.3e-46 187.2 129 69.8
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.2e-45 186.8 129 69.0
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.2e-45 186.8 129 69.0
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 1.6e-45 186.4 129 69.0
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 1.6e-45 186.4 130 68.5
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 1.6e-45 186.4 127 69.3
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.6e-45 186.4 128 68.0
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 2.7e-45 185.7 128 66.4
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 2.7e-45 185.7 130 70.8
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 2.7e-45 185.7 130 71.5
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 3.5e-45 185.3 128 68.0
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 3.5e-45 185.3 130 68.5
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 4.6e-45 184.9 126 70.6
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 4.6e-45 184.9 130 66.9
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 4.6e-45 184.9 130 66.9
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 6.0e-45 184.5 129 69.8
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 6.0e-45 184.5 130 67.7
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 6.0e-45 184.5 129 68.2
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 7.9e-45 184.1 128 69.5
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 7.9e-45 184.1 132 68.2
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 7.9e-45 184.1 129 67.4
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 1.3e-44 183.3 129 67.4
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 1.3e-44 183.3 131 68.7
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 1.8e-44 183.0 120 72.5
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 1.8e-44 183.0 124 71.0
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 1.8e-44 183.0 129 69.0
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 2.3e-44 182.6 130 69.2
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 2.3e-44 182.6 131 67.9
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 3.0e-44 182.2 128 66.4
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 3.0e-44 182.2 129 66.7
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 3.0e-44 182.2 128 65.6
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 5.1e-44 181.4 128 64.8
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 5.1e-44 181.4 117 73.5
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 5.1e-44 181.4 126 67.5
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 6.7e-44 181.0 132 67.4
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 8.7e-44 180.6 130 65.4
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.5e-43 179.9 130 66.2
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 1.5e-43 179.9 131 66.4
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 1.9e-43 179.5 121 70.2
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 1.9e-43 179.5 126 65.9
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 1.9e-43 179.5 127 66.1
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 1.9e-43 179.5 126 67.5
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 1.9e-43 179.5 130 69.2
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 2.5e-43 179.1 120 71.7
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 2.5e-43 179.1 120 71.7
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 2.5e-43 179.1 135 65.9
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 2.5e-43 179.1 127 66.9
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 4.3e-43 178.3 128 64.8
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 4.3e-43 178.3 128 65.6
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 5.7e-43 177.9 130 65.4
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 7.4e-43 177.6 127 66.1
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 7.4e-43 177.6 127 66.1
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 7.4e-43 177.6 127 66.1
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 7.4e-43 177.6 127 66.1
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 9.6e-43 177.2 127 66.1
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.3e-42 176.8 127 65.4
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.3e-42 176.8 127 66.1
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 2.1e-42 176.0 141 61.0
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 2.1e-42 176.0 129 65.1
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 4.8e-42 174.9 125 64.8
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 1.1e-41 173.7 128 64.8
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 1.4e-41 173.3 96 87.5
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 1.4e-41 173.3 111 73.0
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 2.4e-41 172.6 117 70.1
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 5.3e-41 171.4 125 63.2
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 9.0e-41 170.6 129 61.2
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.5e-40 169.9 156 57.1
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 2.5e-38 162.5 114 68.4
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 9.7e-35 150.6 129 60.5
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.4e-33 146.7 102 66.7
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 1.4e-30 136.7 94 68.1
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 7.9e-29 131.0 127 54.3
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 5.1e-28 128.3 129 55.0
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 1.1e-27 127.1 92 65.2
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 2.2e-26 122.9 95 58.9
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 4.1e-25 118.6 94 61.7
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 4.5e-24 115.2 108 52.8
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 1.4e-22 110.2 115 50.4
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 7.9e-21 104.4 57 80.7
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 1.5e-19 100.1 104 51.9
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 1.4e-17 93.6 55 76.4
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 3.1e-17 92.4 79 58.2
A09p20840 Brassica napus HOM05D000772 ORTHO05D003239 7.7e-16 87.8 60 73.3
BraA09t37687Z Brassica rapa HOM05D000772 ORTHO05D003239 7.7e-16 87.8 60 73.3
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 2.5e-14 82.8 119 42.0
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 7.2e-14 81.3 89 41.6
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.1e-13 79.7 80 52.5
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 6.7e-12 74.7 61 50.8
MD07G1099000 Malus domestica HOM05D003935 ORTHO05D005096 1.5e-11 73.6 40 77.5
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 7.5e-11 71.2 120 37.5
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.7e-10 70.1 73 49.3
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 6.3e-10 68.2 79 49.4
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 2.0e-08 63.2 69 49.3
Zm00001eb395010 Zea mays HOM05D034860 ORTHO05D442630 2.0e-08 63.2 34 76.5
C03p26610 Brassica napus HOM05D003935 ORTHO05D023770 3.5e-08 62.4 33 84.8
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 4.5e-08 62.0 56 48.2
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea HOM05D003935 ORTHO05D023770 7.7e-08 61.2 31 87.1
Zm00001eb363380 Zea mays HOM05D003935 ORTHO05D445556 7.7e-08 61.2 32 78.1
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 8.5e-07 57.8 65 47.7


User provided reference genes

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