Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 0.0e+00 1166.4 701 100.0
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 6.2e-302 1040.4 704 87.4
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 5.7e-255 884.4 669 74.0
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 2.5e-250 869.0 680 72.8
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 3.2e-250 868.6 670 74.6
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 1.6e-249 866.3 666 73.4
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 3.6e-249 865.1 648 75.0
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 1.0e-248 863.6 670 71.2
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 3.9e-248 861.7 670 71.2
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 6.7e-248 860.9 676 72.0
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 1.7e-246 856.3 654 72.9
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.7e-246 856.3 656 73.0
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 2.2e-246 855.9 652 71.8
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 3.7e-246 855.1 656 72.9
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 3.7e-246 855.1 656 75.0
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 1.8e-245 852.8 660 72.4
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.8e-245 852.8 656 72.9
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 3.1e-245 852.0 676 69.7
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 5.3e-245 851.3 654 73.5
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 7.0e-245 850.9 676 72.2
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 9.1e-245 850.5 684 73.0
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 2.0e-244 849.4 681 70.2
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 1.0e-243 847.0 656 73.2
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 2.2e-243 845.9 670 73.6
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 5.0e-243 844.7 691 69.5
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 5.0e-243 844.7 648 72.1
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 8.5e-243 844.0 691 70.9
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 1.5e-242 843.2 676 70.0
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 1.6e-241 839.7 657 71.2
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 1.6e-241 839.7 649 70.6
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 2.7e-241 839.0 670 71.5
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 6.1e-241 837.8 671 68.3
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 2.3e-240 835.9 669 68.9
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 3.0e-240 835.5 669 69.2
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 3.0e-240 835.5 649 70.7
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 1.5e-239 833.2 668 68.6
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 2.0e-239 832.8 657 71.1
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 2.0e-239 832.8 640 73.3
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 4.4e-239 831.6 698 67.8
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 4.4e-239 831.6 695 69.6
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 7.5e-239 830.9 678 69.5
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 7.5e-239 830.9 676 68.3
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 7.5e-239 830.9 654 70.5
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 2.2e-238 829.3 671 69.9
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 2.8e-238 828.9 680 67.8
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 2.8e-238 828.9 647 69.7
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 8.3e-238 827.4 669 67.7
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 2.4e-237 825.9 654 69.1
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 9.1e-237 823.9 674 69.0
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 1.6e-236 823.2 695 65.8
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 1.6e-236 823.2 695 69.1
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.7e-236 822.4 695 69.1
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 3.5e-236 822.0 654 70.3
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 3.5e-236 822.0 745 63.4
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 7.7e-236 820.8 655 69.3
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 7.7e-236 820.8 745 63.4
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 1.0e-235 820.5 681 68.1
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 2.9e-235 818.9 653 72.7
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 6.5e-235 817.8 661 71.0
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 8.5e-235 817.4 657 71.4
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 8.5e-235 817.4 650 71.5
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.1e-234 817.0 669 69.5
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.5e-234 816.6 695 70.4
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 2.5e-234 815.8 655 69.6
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 3.2e-234 815.5 655 67.9
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 7.2e-234 814.3 655 69.5
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 7.2e-234 814.3 669 67.4
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 1.2e-233 813.5 656 70.9
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 1.6e-233 813.1 705 66.4
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 2.1e-233 812.8 670 70.6
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 8.0e-233 810.8 669 67.9
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 8.8e-232 807.4 705 66.0
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 2.0e-231 806.2 655 69.0
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 5.7e-231 804.7 655 68.4
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 5.7e-231 804.7 655 68.4
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 4.8e-230 801.6 695 65.9
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 6.3e-230 801.2 664 71.4
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 8.3e-230 800.8 665 68.0
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 1.1e-229 800.4 681 68.3
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 1.8e-229 799.7 655 68.4
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 1.6e-228 796.6 640 69.7
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 1.1e-226 790.4 677 67.9
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 1.5e-226 790.0 655 67.5
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 2.5e-226 789.3 653 69.5
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 5.5e-226 788.1 655 68.7
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 5.5e-226 788.1 655 68.7
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.2e-225 786.9 744 62.1
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 2.1e-225 786.2 661 67.2
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 8.0e-225 784.3 632 69.5
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 2.3e-224 782.7 624 73.2
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 5.2e-224 781.6 691 65.0
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 1.7e-222 776.5 652 69.0
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 3.7e-222 775.4 686 64.6
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 4.9e-222 775.0 653 64.9
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 3.1e-221 772.3 635 68.0
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 3.1e-221 772.3 657 69.7
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 1.6e-220 770.0 665 67.7
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 3.5e-220 768.8 673 65.1
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 6.6e-219 764.6 653 66.5
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 1.9e-218 763.1 647 68.2
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 1.2e-217 760.4 676 65.7
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 2.1e-217 759.6 653 66.2
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 1.8e-216 756.5 661 67.6
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 2.0e-215 753.1 591 72.9
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 2.0e-215 753.1 670 65.5
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 7.8e-212 741.1 598 70.9
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.7e-211 740.0 727 60.7
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 6.2e-209 731.5 708 62.3
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 1.7e-206 723.4 1048 47.4
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 9.2e-205 717.6 585 68.5
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.3e-202 709.1 704 59.8
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.4e-200 703.7 677 61.7
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 1.5e-194 683.7 650 60.0
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 3.6e-193 679.1 659 59.0
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 8.1e-193 677.9 650 62.0
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 3.1e-192 676.0 649 59.6
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 3.0e-179 632.9 702 56.4
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 6.9e-176 621.7 535 67.3
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 1.2e-151 541.2 676 50.9
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 1.1e-138 498.0 412 70.1
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 3.8e-134 483.0 407 69.3
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 4.8e-129 466.1 342 71.6
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 4.2e-125 453.0 369 67.8
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 1.0e-118 431.8 556 50.9
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 2.4e-80 304.3 271 64.6
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 2.6e-74 284.3 709 33.0
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 3.0e-70 270.8 260 61.9
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 6.2e-68 263.1 515 40.0
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 7.6e-66 256.1 522 39.5
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 1.1e-43 182.6 133 71.4
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 2.0e-42 178.3 185 57.3
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 2.2e-41 174.9 288 44.1
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 1.2e-39 169.1 111 78.4
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 3.5e-39 167.5 140 64.3
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.1e-35 154.5 93 82.8
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 7.7e-34 149.8 146 58.9
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 7.4e-29 133.3 687 27.4
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 2.2e-25 121.7 622 24.4
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 6.5e-17 93.6 90 58.9
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 6.1e-15 87.0 707 21.9
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 3.3e-13 81.3 71 64.8
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 2.2e-09 68.6 77 58.4
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 9.4e-08 63.2 49 67.3
Cre04.g223900 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 3.0e-06 58.2 244 20.9
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 6.8e-06 57.0 56 64.3


User provided reference genes

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