Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb215980 Zea mays HOM05D005910 ORTHO05D007088 3.0e-100 368.6 202 100.0
Zm00001eb055560 Zea mays HOM05D005910 ORTHO05D007088 1.5e-91 339.7 202 93.6
Os03g0721400 Oryza sativa ssp. japonica HOM05D005910 ORTHO05D007088 1.7e-87 326.2 210 86.7
PSO478G2464 Papaver somniferum HOM05D005910 ORTHO05D007088 3.7e-66 255.4 202 65.8
TWI77G0716 Tripterygium wilfordii HOM05D005910 ORTHO05D007088 6.4e-66 254.6 200 68.5
FvH4_6g21840 Fragaria vesca HOM05D005910 ORTHO05D007088 5.4e-65 251.5 200 67.5
FAN05G0623 Fragaria x ananassa HOM05D005910 ORTHO05D007088 1.2e-64 250.4 200 67.0
FAN14G5103 Fragaria x ananassa HOM05D005910 ORTHO05D007088 1.2e-64 250.4 200 67.0
MD12G1054500 Malus domestica HOM05D005910 ORTHO05D007088 1.2e-64 250.4 201 66.2
HPP92_021275 Vanilla planifolia HOM05D005910 ORTHO05D007088 1.2e-64 250.4 204 65.2
Actinidia17287 Actinidia chinensis HOM05D005910 ORTHO05D007088 1.6e-64 250.0 197 65.5
Dinv16345 Davidia involucrata HOM05D005910 ORTHO05D007088 2.0e-64 249.6 203 66.0
CANSAT64G0849 Cannabis sativa HOM05D005910 ORTHO05D007088 2.7e-64 249.2 200 66.5
GSVIVG01033465001 Vitis vinifera HOM05D005910 ORTHO05D007088 3.5e-64 248.8 201 65.2
Actinidia38597 Actinidia chinensis HOM05D005910 ORTHO05D007088 7.8e-64 247.7 197 65.0
FAN02G0902 Fragaria x ananassa HOM05D005910 ORTHO05D007088 1.0e-63 247.3 200 66.0
RcHm_v2.0_Chr3g0479191 Rosa chinensis HOM05D005910 ORTHO05D007088 1.0e-63 247.3 200 65.5
BcaB04g21099 Brassica carinata HOM05D005910 ORTHO05D007088 1.3e-63 246.9 197 64.5
Atru.chr8.1156 Acer truncatum HOM05D005910 ORTHO05D007088 1.7e-63 246.5 198 66.2
Sed0016712 Sechium edule HOM05D005910 ORTHO05D007088 3.9e-63 245.4 197 66.5
MSTRG.19925 Avicennia marina HOM05D005910 ORTHO05D007088 6.6e-63 244.6 194 66.0
Cpa.g.sc85.46 Carica papaya HOM05D005910 ORTHO05D007088 8.6e-63 244.2 198 64.6
ClCG10G017690 Citrullus lanatus HOM05D005910 ORTHO05D007088 8.6e-63 244.2 197 65.0
CARHR086590 Cardamine hirsuta HOM05D005910 ORTHO05D007088 1.1e-62 243.8 197 65.0
CiPaw.09G028200 Carya illinoinensis HOM05D005910 ORTHO05D007088 1.1e-62 243.8 197 64.5
CiPaw.10G025100 Carya illinoinensis HOM05D005910 ORTHO05D007088 1.1e-62 243.8 197 66.0
Lsat_1_v5_gn_2_56160 Lactuca sativa HOM05D005910 ORTHO05D007088 1.1e-62 243.8 198 64.6
AL3G23640 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 1.5e-62 243.4 197 64.5
CSS0007798 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 1.5e-62 243.4 203 64.0
Hma1.2p1_0124F.1_g058350 Hydrangea macrophylla HOM05D005910 ORTHO05D007088 1.5e-62 243.4 202 63.9
AT3G12030 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 1.9e-62 243.0 197 64.5
Glyma.16G043900 Glycine max HOM05D005910 ORTHO05D007088 2.5e-62 242.7 202 63.4
Lalb_Chr22g0359441 Lupinus albus HOM05D005910 ORTHO05D007088 2.5e-62 242.7 202 63.9
SGA_v2.0_scaffold69G23042 Striga asiatica HOM05D005910 ORTHO05D007088 2.5e-62 242.7 200 66.0
BolC1t05270H Brassica oleracea HOM05D005910 ORTHO05D007088 3.3e-62 242.3 197 64.5
CARHR206550 Cardamine hirsuta HOM05D005910 ORTHO05D007088 3.3e-62 242.3 205 63.4
MELO3C009607.2 Cucumis melo HOM05D005910 ORTHO05D007088 3.3e-62 242.3 197 64.0
QL07p024560 Quercus lobata HOM05D005910 ORTHO05D007088 3.3e-62 242.3 197 65.0
Sc13g0002410 Simmondsia chinensis HOM05D005910 ORTHO05D007088 3.3e-62 242.3 199 63.3
Carub.0006s0554 Capsella rubella HOM05D005910 ORTHO05D007088 4.3e-62 241.9 205 62.9
PGR142G2565 Punica granatum HOM05D005910 ORTHO05D007088 4.3e-62 241.9 198 63.6
TAR623G1561 Trochodendron aralioides HOM05D005910 ORTHO05D007088 4.3e-62 241.9 202 65.3
Aqoxy7G00427 Aquilegia oxysepala HOM05D005910 ORTHO05D007088 5.6e-62 241.5 198 65.2
DCAR_019862 Daucus carota HOM05D005910 ORTHO05D007088 5.6e-62 241.5 201 62.7
Manes.09G037701 Manihot esculenta HOM05D005910 ORTHO05D007088 5.6e-62 241.5 198 64.1
Peaxi162Scf00463g00044 Petunia axillaris HOM05D005910 ORTHO05D007088 5.6e-62 241.5 201 62.2
TAR369G0766 Trochodendron aralioides HOM05D005910 ORTHO05D007088 5.6e-62 241.5 202 64.9
unitig_26.g10040 Utricularia gibba HOM05D005910 ORTHO05D007088 5.6e-62 241.5 201 64.7
Glyma.19G108300 Glycine max HOM05D005910 ORTHO05D007088 7.3e-62 241.1 202 63.4
Gohir.A09G128900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 7.3e-62 241.1 198 64.6
Psat3g091080 Pisum sativum HOM05D005910 ORTHO05D007088 7.3e-62 241.1 202 63.4
THA.LOC104799285 Tarenaya hassleriana HOM05D005910 ORTHO05D007088 7.3e-62 241.1 197 64.0
Aa31LG3G5420 Aethionema arabicum HOM05D005910 ORTHO05D007088 9.5e-62 240.7 197 64.0
AL6G16750 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 9.5e-62 240.7 205 62.9
AT5G06660 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 9.5e-62 240.7 205 62.9
BcaC09g48209 Brassica carinata HOM05D005910 ORTHO05D007088 9.5e-62 240.7 197 64.0
Ca_08246_v3 Cicer arietinum L. HOM05D005910 ORTHO05D007088 9.5e-62 240.7 202 63.4
Thhalv10022159m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 9.5e-62 240.7 205 62.9
Lalb_Chr14g0364291 Lupinus albus HOM05D005910 ORTHO05D007088 9.5e-62 240.7 202 63.4
Medtr7g085050 Medicago truncatula HOM05D005910 ORTHO05D007088 9.5e-62 240.7 202 63.4
Phvul.001G097100 Phaseolus vulgaris HOM05D005910 ORTHO05D007088 1.2e-61 240.4 202 62.9
Cc06_g15530 Coffea canephora HOM05D005910 ORTHO05D007088 1.6e-61 240.0 203 64.5
Migut.J01866 Erythranthe guttata HOM05D005910 ORTHO05D007088 1.6e-61 240.0 200 64.5
Gohir.D09G124900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 1.6e-61 240.0 198 64.1
Gorai.006G143800 Gossypium raimondii HOM05D005910 ORTHO05D007088 1.6e-61 240.0 198 64.1
VMungo1383G3424 Vigna mungo HOM05D005910 ORTHO05D007088 1.6e-61 240.0 202 62.9
Rhsim04G0093900 Rhododendron simsii HOM05D005910 ORTHO05D007088 2.1e-61 239.6 203 64.0
Sp6g36210 Schrenkiella parvula HOM05D005910 ORTHO05D007088 2.1e-61 239.6 205 62.4
BraA01t04144Z Brassica rapa HOM05D005910 ORTHO05D007088 2.8e-61 239.2 197 64.0
Oeu057587.1 Olea europaea HOM05D005910 ORTHO05D007088 2.8e-61 239.2 203 63.1
Prupe.7G082200 Prunus persica HOM05D005910 ORTHO05D007088 2.8e-61 239.2 200 64.0
Carub.0003s1137 Capsella rubella HOM05D005910 ORTHO05D007088 3.6e-61 238.8 197 64.0
Thhalv10016091m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 3.6e-61 238.8 197 64.0
Rhsim04G0095300 Rhododendron simsii HOM05D005910 ORTHO05D007088 3.6e-61 238.8 203 64.0
TPR.G5912 Trifolium pratense HOM05D005910 ORTHO05D007088 4.7e-61 238.4 202 62.9
Lj1g0011929 Lotus japonicus HOM05D005910 ORTHO05D007088 8.0e-61 237.7 202 62.9
Nitab4.5_0000009g0230 Nicotiana tabacum HOM05D005910 ORTHO05D007088 8.0e-61 237.7 203 61.6
Sp3g10260 Schrenkiella parvula HOM05D005910 ORTHO05D007088 8.0e-61 237.7 197 63.5
ATR0598G129 Amborella trichopoda HOM05D005910 ORTHO05D007088 1.1e-60 237.3 198 64.1
Duzib106G1486 Durio zibethinus HOM05D005910 ORTHO05D007088 1.1e-60 237.3 198 63.6
Thecc.05G175100 Theobroma cacao HOM05D005910 ORTHO05D007088 1.1e-60 237.3 198 64.1
Manes.08G042400 Manihot esculenta HOM05D005910 ORTHO05D007088 1.8e-60 236.5 198 66.2
CAN.G960.19 Capsicum annuum HOM05D005910 ORTHO05D007088 3.1e-60 235.7 201 62.7
COL.COLO4_29362 Corchorus olitorius HOM05D005910 ORTHO05D007088 3.1e-60 235.7 198 63.1
Nitab4.5_0009361g0020 Nicotiana tabacum HOM05D005910 ORTHO05D007088 3.1e-60 235.7 203 61.1
Solyc10g079000.1 Solanum lycopersicum HOM05D005910 ORTHO05D007088 5.2e-60 235.0 201 62.7
Sopen10g029620 Solanum pennellii HOM05D005910 ORTHO05D007088 5.2e-60 235.0 201 62.7
PGSC0003DMG400011451 Solanum tuberosum HOM05D005910 ORTHO05D007088 5.2e-60 235.0 201 62.7
SMO367G0437 Selaginella moellendorffii HOM05D005910 ORTHO05D007088 6.8e-60 234.6 193 62.7
Mapoly0107s0023 Marchantia polymorpha HOM05D005910 ORTHO05D007088 8.9e-60 234.2 194 63.4
AagrBONN_evm.TU.Sc2ySwM_117.1513 Anthoceros agrestis HOM05D005910 ORTHO05D007088 1.2e-59 233.8 199 62.3
Pp3c21_11350 Physcomitrium patens HOM05D005910 ORTHO05D007088 1.2e-59 233.8 198 61.6
AUR62012008 Chenopodium quinoa HOM05D005910 ORTHO05D007088 2.0e-59 233.0 198 62.6
AUR62015329 Chenopodium quinoa HOM05D005910 ORTHO05D007088 7.5e-59 231.1 198 62.6
Haze_20022 Corylus avellana HOM05D005910 ORTHO05D007088 2.2e-58 229.6 197 62.9
Haze_20025 Corylus avellana HOM05D005910 ORTHO05D007088 2.2e-58 229.6 197 62.9
ECA238G3575 Erigeron canadensis HOM05D005910 ORTHO05D007088 1.1e-57 227.3 189 64.0
HanXRQChr14g0438251 Helianthus annuus HOM05D005910 ORTHO05D007088 1.9e-57 226.5 198 61.6
CsaV3_3G038630 Cucumis sativus L. HOM05D005910 ORTHO05D007088 2.4e-57 226.1 182 64.3
Potri.016G060300 Populus trichocarpa HOM05D005910 ORTHO05D007088 4.1e-57 225.3 198 61.6
EL10Ac3g06882 Beta vulgaris HOM05D005910 ORTHO05D007088 1.6e-56 223.4 198 59.6
Lsat_1_v5_gn_6_36581 Lactuca sativa HOM05D005910 ORTHO05D007088 2.1e-56 223.0 188 61.2
SHI31753 Sapria himalayana HOM05D005910 ORTHO05D007088 4.6e-56 221.9 199 59.3
CBR_g49549 Chara braunii HOM05D005910 ORTHO05D007088 7.8e-56 221.1 192 58.9
Cfa020141 Carpinus fangiana HOM05D005910 ORTHO05D007088 2.3e-55 219.5 197 60.4
vmacro22120 Vaccinium macrocarpon HOM05D005910 ORTHO05D007088 9.5e-54 214.2 176 68.2
Sed0026900 Sechium edule HOM05D005910 ORTHO05D007088 1.6e-53 213.4 197 58.9
HanXRQChr03g0075461 Helianthus annuus HOM05D005910 ORTHO05D007088 1.8e-52 209.9 198 59.1
Ciclev10013918m.g Citrus clementina HOM05D005910 ORTHO05D007088 1.9e-46 189.9 124 76.6
SEGI_08450 Sequoiadendron giganteum HOM05D005910 ORTHO05D007088 1.8e-44 183.3 174 60.9
Lj1P1133T16 Lonicera japonica HOM05D005910 ORTHO05D007088 3.1e-44 182.6 124 73.4
Sabra16G0063200 Salix brachista HOM05D005910 ORTHO05D007088 7.6e-43 177.9 124 71.8
CSS0031188 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 1.6e-37 160.2 202 47.5
Dinv24042 Davidia involucrata HOM05D005910 ORTHO05D007088 2.1e-37 159.8 197 50.3
CSS0042896 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 1.1e-33 147.5 191 47.6
CSS0024230 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 1.4e-33 147.1 209 47.4
Haze_26182 Corylus avellana HOM05D005910 ORTHO05D007088 1.2e-32 144.1 172 45.3
DCAR_009688 Daucus carota HOM05D005910 ORTHO05D007088 4.6e-32 142.1 98 72.4
MD14G1053500 Malus domestica HOM05D005910 ORTHO05D007088 1.7e-31 140.2 122 63.1
Actinidia38594 Actinidia chinensis HOM05D005910 ORTHO05D007088 6.6e-31 138.3 133 60.2
MD11G1118600 Malus domestica HOM05D005910 ORTHO05D007088 3.3e-30 136.0 130 59.2
MD00G1019800 Malus domestica HOM05D005910 ORTHO05D007088 6.0e-24 115.2 89 64.0
QL03p020127 Quercus lobata HOM05D005910 ORTHO05D007088 7.4e-22 108.2 104 53.8
QL07p006238 Quercus lobata HOM05D005910 ORTHO05D007088 6.9e-20 101.7 105 50.5
CDE06G1328 Ceratophyllum demersum HOM05D005910 ORTHO05D007088 3.4e-19 99.4 82 64.6
MD03G1239200 Malus domestica HOM05D005910 ORTHO05D007088 1.3e-18 97.4 122 45.9
PRCOL_00005630 Prasinoderma coloniale HOM05D005910 ORTHO05D007088 1.6e-16 90.5 177 32.2
Glyma.07G000600 Glycine max HOM05D005910 ORTHO05D007088 4.8e-13 79.0 58 69.0
AUR62043130 Chenopodium quinoa HOM05D005910 ORTHO05D007088 8.2e-13 78.2 67 61.2
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 8.2e-13 78.2 45 75.6
Cre03.g182900 Chlamydomonas reinhardtii HOM05D005910 ORTHO05D007088 9.0e-12 74.7 175 26.9
HanXRQChr13g0398341 Helianthus annuus HOM05D005910 ORTHO05D007088 6.7e-07 58.5 41 68.3


User provided reference genes

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