Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 3.1e-107 391.7 189 100.0
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 8.9e-70 267.3 185 69.2
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 5.8e-69 264.6 185 68.1
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 4.9e-68 261.5 185 68.6
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 1.4e-67 260.0 185 67.0
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 1.4e-67 260.0 186 67.2
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 3.2e-67 258.8 185 67.0
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 4.1e-67 258.5 186 67.2
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 5.4e-67 258.1 185 66.5
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 1.6e-66 256.5 185 65.9
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 1.6e-66 256.5 185 65.4
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 3.5e-66 255.4 185 65.4
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 3.5e-66 255.4 185 65.9
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 4.6e-66 255.0 185 67.0
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 6.0e-66 254.6 186 66.7
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 1.0e-65 253.8 185 67.0
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 2.3e-65 252.7 185 64.9
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 2.3e-65 252.7 185 64.9
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 2.3e-65 252.7 185 67.0
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 3.0e-65 252.3 183 65.0
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 3.0e-65 252.3 179 68.2
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 3.0e-65 252.3 185 65.4
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 3.9e-65 251.9 185 65.4
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 5.0e-65 251.5 185 64.9
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 5.0e-65 251.5 185 64.9
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 6.6e-65 251.1 181 65.7
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 6.6e-65 251.1 185 65.4
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 8.6e-65 250.8 185 64.9
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 1.1e-64 250.4 185 65.4
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 1.1e-64 250.4 185 64.9
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 1.1e-64 250.4 185 65.9
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 1.5e-64 250.0 186 66.1
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 1.9e-64 249.6 185 65.9
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 2.5e-64 249.2 185 64.3
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 3.3e-64 248.8 185 63.8
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 3.3e-64 248.8 185 63.8
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 3.3e-64 248.8 185 63.2
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 4.3e-64 248.4 186 65.1
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 4.3e-64 248.4 185 65.9
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 4.3e-64 248.4 185 63.8
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 5.6e-64 248.1 185 64.3
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 9.5e-64 247.3 187 66.3
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 9.5e-64 247.3 187 66.3
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 1.2e-63 246.9 185 64.3
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.6e-63 246.5 186 65.1
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 2.1e-63 246.1 187 65.8
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 2.8e-63 245.7 195 61.5
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 3.6e-63 245.4 185 64.3
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 4.7e-63 245.0 185 64.9
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 4.7e-63 245.0 186 65.1
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 6.2e-63 244.6 185 63.8
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 8.0e-63 244.2 186 64.5
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 8.0e-63 244.2 186 64.5
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 8.0e-63 244.2 186 64.5
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 1.1e-62 243.8 185 63.8
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 1.1e-62 243.8 185 66.5
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 1.8e-62 243.0 185 62.2
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 2.3e-62 242.7 185 62.7
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 4.0e-62 241.9 185 63.2
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 4.0e-62 241.9 185 62.7
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 4.0e-62 241.9 188 63.8
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 5.2e-62 241.5 185 61.6
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 5.2e-62 241.5 185 62.7
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 5.2e-62 241.5 185 62.2
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 6.8e-62 241.1 186 62.4
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 6.8e-62 241.1 185 63.2
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 6.8e-62 241.1 185 63.2
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 6.8e-62 241.1 185 63.2
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 1.2e-61 240.4 185 63.2
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 1.5e-61 240.0 185 62.2
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 1.5e-61 240.0 188 63.3
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 3.4e-61 238.8 185 63.8
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 3.4e-61 238.8 185 61.6
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 4.4e-61 238.4 186 63.4
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 4.4e-61 238.4 185 62.7
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 5.8e-61 238.0 186 61.3
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 7.5e-61 237.7 186 61.3
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 7.5e-61 237.7 186 61.3
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 1.3e-60 236.9 186 60.8
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 1.3e-60 236.9 185 61.1
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 1.7e-60 236.5 186 60.8
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 2.2e-60 236.1 185 64.3
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 2.2e-60 236.1 185 64.3
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 2.9e-60 235.7 185 62.2
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 3.7e-60 235.3 186 62.4
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 3.7e-60 235.3 185 61.1
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 4.9e-60 235.0 185 62.7
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 6.4e-60 234.6 186 61.3
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 6.4e-60 234.6 185 61.6
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 1.1e-59 233.8 186 61.8
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 1.4e-59 233.4 185 62.7
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 1.9e-59 233.0 186 60.2
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 1.9e-59 233.0 186 60.8
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 1.9e-59 233.0 186 60.2
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 1.9e-59 233.0 185 61.6
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 4.1e-59 231.9 186 60.2
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 5.4e-59 231.5 185 59.5
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 9.2e-59 230.7 185 59.5
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 9.2e-59 230.7 186 60.2
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 9.2e-59 230.7 185 59.5
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 1.2e-58 230.3 185 60.0
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 1.2e-58 230.3 185 59.5
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 1.2e-58 230.3 185 59.5
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 1.2e-58 230.3 186 61.8
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 1.6e-58 229.9 199 59.3
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 4.6e-58 228.4 186 60.2
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 6.0e-58 228.0 187 61.5
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 6.0e-58 228.0 185 61.6
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 6.0e-58 228.0 185 61.1
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 1.0e-57 227.3 185 58.9
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 1.3e-57 226.9 186 59.1
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 3.0e-57 225.7 165 64.8
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 5.1e-57 224.9 175 63.4
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 6.6e-57 224.6 199 56.3
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 4.3e-56 221.9 187 60.4
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 3.6e-55 218.8 187 57.8
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 8.1e-55 217.6 185 59.5
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 1.5e-53 213.4 185 57.3
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 3.4e-53 212.2 189 56.6
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 1.7e-52 209.9 147 69.4
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 2.1e-50 203.0 159 61.6
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 2.1e-50 203.0 188 56.4
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 3.0e-49 199.1 187 55.1
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 6.6e-49 198.0 185 55.1
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 2.5e-48 196.1 172 57.6
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 9.5e-48 194.1 221 48.9
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 1.6e-47 193.4 216 50.9
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 1.1e-46 190.7 151 60.9
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 2.1e-42 176.4 153 56.2
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 1.1e-40 170.6 112 77.7
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 3.6e-39 165.6 196 50.0
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 6.6e-33 144.8 164 48.8
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 2.1e-26 123.2 105 62.9
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 7.6e-21 104.8 127 48.0
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 1.2e-18 97.4 241 29.9
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 8.2e-15 84.7 65 60.0
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 1.2e-10 70.9 77 50.6
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 1.6e-10 70.5 34 91.2
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 2.7e-10 69.7 37 81.1


User provided reference genes

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