Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 7.8e-141 503.8 262 100.0
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 5.6e-107 391.3 262 77.9
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 2.7e-93 345.9 221 74.7
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 8.2e-90 334.3 218 72.0
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 1.1e-89 334.0 229 71.2
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 6.9e-89 331.3 261 65.5
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 9.1e-89 330.9 220 70.5
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 1.2e-88 330.5 188 81.9
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 1.2e-88 330.5 186 79.6
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 4.5e-88 328.6 249 66.7
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 4.5e-88 328.6 248 67.7
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 1.3e-87 327.0 248 67.3
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 1.3e-87 327.0 252 64.3
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 1.3e-87 327.0 211 73.0
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 2.9e-87 325.9 221 70.1
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 3.8e-87 325.5 188 79.3
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 5.0e-87 325.1 246 65.9
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 5.0e-87 325.1 223 70.0
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 5.0e-87 325.1 219 70.3
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 8.5e-87 324.3 202 74.8
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 8.5e-87 324.3 266 62.8
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 1.4e-86 323.6 216 72.7
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 1.4e-86 323.6 209 70.3
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 1.4e-86 323.6 208 73.6
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 2.5e-86 322.8 188 78.2
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.5e-86 322.8 188 78.2
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.2e-86 322.4 227 70.0
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 3.2e-86 322.4 255 63.9
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 3.2e-86 322.4 248 64.5
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 3.2e-86 322.4 249 66.3
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 9.4e-86 320.9 247 63.6
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 1.2e-85 320.5 203 73.9
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 1.6e-85 320.1 188 78.2
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 2.7e-85 319.3 188 76.6
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 4.7e-85 318.5 244 66.4
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 7.9e-85 317.8 214 70.6
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 1.0e-84 317.4 188 75.5
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 1.0e-84 317.4 250 64.0
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.8e-84 316.6 220 70.9
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.8e-84 316.6 188 77.7
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 2.3e-84 316.2 188 76.6
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 5.1e-84 315.1 249 62.2
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 6.7e-84 314.7 263 62.4
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 1.1e-83 313.9 219 68.9
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 1.1e-83 313.9 218 67.4
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 2.0e-83 313.2 214 70.6
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 2.6e-83 312.8 208 70.7
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 2.6e-83 312.8 188 75.0
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 4.4e-83 312.0 243 65.4
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 4.4e-83 312.0 246 64.6
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 5.7e-83 311.6 262 61.8
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 5.7e-83 311.6 252 65.5
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 5.7e-83 311.6 253 63.2
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 7.4e-83 311.2 188 74.5
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 9.7e-83 310.8 237 65.0
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.3e-82 310.5 188 74.5
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 1.7e-82 310.1 263 61.6
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.7e-82 310.1 263 61.6
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 1.7e-82 310.1 208 70.7
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 2.2e-82 309.7 261 60.5
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 4.8e-82 308.5 256 62.1
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 4.8e-82 308.5 185 75.1
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 8.2e-82 307.8 185 75.1
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 1.1e-81 307.4 257 61.1
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 1.1e-81 307.4 224 68.3
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 1.8e-81 306.6 242 62.8
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 1.8e-81 306.6 218 66.5
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 2.4e-81 306.2 188 73.4
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 4.1e-81 305.4 220 66.8
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 5.3e-81 305.1 246 61.4
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 9.1e-81 304.3 188 76.6
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 1.2e-80 303.9 189 74.6
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 1.5e-80 303.5 188 73.9
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 2.0e-80 303.1 188 73.4
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.6e-80 302.8 241 62.2
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 7.7e-80 301.2 255 58.8
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 1.3e-79 300.4 188 73.4
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 2.9e-79 299.3 186 76.3
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 2.9e-79 299.3 182 74.7
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 3.8e-79 298.9 245 61.6
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 6.5e-79 298.1 205 67.3
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 1.1e-78 297.4 183 73.8
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 1.9e-78 296.6 188 71.3
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 1.9e-78 296.6 187 72.2
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 2.5e-78 296.2 181 75.1
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 9.4e-78 294.3 205 68.8
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 9.4e-78 294.3 265 55.8
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 9.4e-78 294.3 222 64.0
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 9.4e-78 294.3 249 61.0
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 1.2e-77 293.9 265 55.8
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 3.6e-77 292.4 217 64.1
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 6.1e-77 291.6 223 62.3
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 6.1e-77 291.6 223 62.8
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 8.0e-77 291.2 229 61.1
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 3.0e-76 289.3 257 57.6
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 6.7e-76 288.1 180 75.0
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 1.1e-75 287.3 262 56.1
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 1.1e-75 287.3 262 56.1
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.5e-75 287.0 160 81.2
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 2.2e-74 283.1 157 80.9
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 2.8e-74 282.7 161 78.3
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 6.3e-74 281.6 167 74.9
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 8.2e-74 281.2 204 65.7
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 1.1e-73 280.8 251 59.4
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 1.8e-73 280.0 182 71.4
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 2.4e-73 279.6 258 58.1
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 2.4e-73 279.6 249 58.6
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 4.1e-73 278.9 242 60.3
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 7.0e-73 278.1 186 69.4
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 2.6e-72 276.2 229 60.7
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 3.5e-72 275.8 192 70.8
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 2.2e-71 273.1 255 57.3
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 2.9e-71 272.7 188 68.6
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 3.8e-71 272.3 202 66.3
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.2e-67 260.8 263 55.1
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 4.1e-65 252.3 158 75.3
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 4.5e-64 248.8 148 77.7
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 1.1e-62 244.2 251 55.0
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 2.3e-60 236.5 149 75.2
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 2.0e-59 233.4 181 55.8
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 4.8e-58 228.8 238 50.8
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 5.0e-55 218.8 235 47.2
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 5.7e-51 205.3 129 71.3
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 4.5e-48 195.7 189 55.0
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.9e-46 190.3 152 63.8
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.2e-42 176.8 103 74.8
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 1.4e-41 174.1 101 75.2
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 2.8e-37 159.8 108 65.7
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 8.1e-29 131.7 101 62.4
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 1.8e-28 130.6 81 70.4
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 6.8e-28 128.6 135 53.3
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 2.6e-27 126.7 90 64.4
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 6.4e-26 122.1 188 39.4
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 1.6e-24 117.5 160 42.5
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 5.8e-19 99.0 153 41.8
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 2.2e-18 97.1 172 35.5
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 2.9e-18 96.7 69 68.1
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 2.9e-18 96.7 182 42.3
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 4.9e-18 95.9 256 31.2
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 8.4e-18 95.1 133 42.9
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 1.1e-14 84.7 53 73.6
Cre06.g278096 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 4.8e-13 79.3 126 36.5
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 3.1e-12 76.6 208 29.8
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 9.0e-12 75.1 273 28.9
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 2.0e-11 73.9 122 33.6
TAR633G0628 Trochodendron aralioides HOM05D007024 ORTHO05D008865 7.6e-11 72.0 238 28.6
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 3.8e-10 69.7 110 35.5
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 1.4e-09 67.8 130 33.1
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 1.4e-09 67.8 237 25.7
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 7.1e-09 65.5 42 69.0
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 7.8e-08 62.0 37 73.0
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 1.0e-07 61.6 146 33.6
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 5.6e-06 55.8 41 61.0


User provided reference genes

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