Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 8.0e-132 473.8 241 100.0
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 1.5e-98 363.2 246 83.3
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 6.0e-63 245.0 160 78.1
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 3.3e-37 159.5 156 50.6
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 4.8e-36 155.6 166 46.4
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 4.8e-36 155.6 165 46.7
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 4.1e-35 152.5 184 44.0
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 2.0e-34 150.2 174 43.1
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 3.6e-31 139.4 158 42.4
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 3.6e-31 139.4 168 44.0
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.8e-30 137.1 186 35.5
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.8e-30 137.1 186 35.5
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 2.3e-30 136.7 194 43.3
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 1.5e-29 134.0 196 42.3
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 1.5e-29 134.0 199 42.2
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 4.4e-29 132.5 162 42.6
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 4.4e-29 132.5 147 46.3
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 7.4e-29 131.7 221 39.4
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 3.7e-28 129.4 174 37.4
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 1.1e-27 127.9 170 40.0
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 2.4e-27 126.7 159 42.8
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 3.1e-27 126.3 175 40.0
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 9.1e-27 124.8 159 42.1
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 9.1e-27 124.8 157 40.8
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 1.2e-26 124.4 176 40.9
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 2.0e-26 123.6 166 41.0
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 5.9e-26 122.1 161 41.0
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 5.9e-26 122.1 161 41.0
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 7.7e-26 121.7 159 40.3
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 7.7e-26 121.7 207 38.6
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 7.7e-26 121.7 207 38.6
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 7.7e-26 121.7 159 39.0
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 1.0e-25 121.3 153 41.2
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.7e-25 120.6 164 41.5
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 1.7e-25 120.6 164 38.4
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 2.2e-25 120.2 162 43.2
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 2.2e-25 120.2 162 43.2
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 2.9e-25 119.8 159 39.6
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 2.9e-25 119.8 151 40.4
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.9e-25 119.8 169 37.9
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 2.9e-25 119.8 208 35.6
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 5.0e-25 119.0 162 42.6
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 5.0e-25 119.0 162 42.6
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 6.5e-25 118.6 214 35.5
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 1.1e-24 117.9 154 39.0
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 1.4e-24 117.5 160 40.6
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 1.4e-24 117.5 163 39.9
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 1.4e-24 117.5 157 40.8
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 1.4e-24 117.5 146 43.2
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 1.9e-24 117.1 159 38.4
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 2.5e-24 116.7 156 41.0
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 2.5e-24 116.7 156 41.0
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.2e-24 116.3 167 37.1
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 3.2e-24 116.3 238 33.6
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 4.2e-24 115.9 173 35.3
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 4.2e-24 115.9 173 35.3
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 4.2e-24 115.9 173 35.8
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 5.5e-24 115.5 156 40.4
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 7.2e-24 115.2 214 34.1
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 7.2e-24 115.2 170 38.2
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 1.2e-23 114.4 188 33.5
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 1.6e-23 114.0 248 36.3
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.6e-23 114.0 167 40.1
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.6e-23 114.0 167 36.5
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.1e-23 113.6 163 37.4
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 2.7e-23 113.2 167 39.5
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 3.6e-23 112.8 166 41.6
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 3.6e-23 112.8 167 37.1
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 3.6e-23 112.8 224 34.4
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 4.7e-23 112.5 167 40.1
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 4.7e-23 112.5 150 41.3
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 6.1e-23 112.1 165 38.8
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 6.1e-23 112.1 150 42.0
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 6.1e-23 112.1 146 42.5
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 7.9e-23 111.7 171 37.4
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 1.4e-22 110.9 159 39.6
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 1.4e-22 110.9 156 39.7
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 1.4e-22 110.9 156 39.7
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 1.4e-22 110.9 163 36.8
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 1.8e-22 110.5 233 34.3
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 1.8e-22 110.5 233 34.3
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 1.8e-22 110.5 224 32.6
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.8e-22 110.5 160 38.8
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 1.8e-22 110.5 159 37.7
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 2.3e-22 110.2 224 35.7
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 2.3e-22 110.2 168 36.3
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 2.3e-22 110.2 170 37.1
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 3.0e-22 109.8 161 36.6
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 3.9e-22 109.4 183 39.3
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 3.9e-22 109.4 157 36.3
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 5.2e-22 109.0 163 36.2
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 5.2e-22 109.0 155 41.3
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 5.2e-22 109.0 159 37.7
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 5.2e-22 109.0 149 38.9
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 6.7e-22 108.6 195 37.9
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 8.8e-22 108.2 207 34.8
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 8.8e-22 108.2 144 41.7
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 8.8e-22 108.2 163 37.4
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.1e-21 107.8 163 39.9
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 1.5e-21 107.5 163 35.0
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 2.0e-21 107.1 152 36.8
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 2.0e-21 107.1 171 35.1
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 2.6e-21 106.7 171 35.1
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 2.6e-21 106.7 146 38.4
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 2.6e-21 106.7 159 37.1
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 3.3e-21 106.3 158 39.2
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 4.4e-21 105.9 145 36.6
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 4.4e-21 105.9 159 37.1
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 5.7e-21 105.5 167 39.5
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 5.7e-21 105.5 146 40.4
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 5.7e-21 105.5 159 34.0
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 7.4e-21 105.1 164 36.0
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 7.4e-21 105.1 149 36.9
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 9.7e-21 104.8 233 33.5
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 9.7e-21 104.8 161 36.0
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 1.3e-20 104.4 185 33.5
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 2.8e-20 103.2 172 32.0
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 4.8e-20 102.4 159 39.6
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 8.2e-20 101.7 175 32.6
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 8.2e-20 101.7 230 32.6
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 1.8e-19 100.5 180 35.0
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 2.4e-19 100.1 177 33.9
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 4.1e-19 99.4 242 33.5
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 4.1e-19 99.4 178 33.1
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 5.3e-19 99.0 169 33.1
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 5.3e-19 99.0 172 34.9
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 9.1e-19 98.2 185 32.4
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 1.2e-18 97.8 170 32.4
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 1.6e-18 97.4 159 33.3
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 2.0e-18 97.1 162 32.1
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.0e-18 97.1 164 39.6
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 7.7e-18 95.1 142 37.3
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 7.7e-18 95.1 159 32.1
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.0e-17 94.7 169 33.1
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 1.7e-17 94.0 217 32.3
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.2e-17 93.6 159 34.0
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.9e-17 93.2 159 34.0
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 3.8e-17 92.8 154 33.1
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 4.2e-16 89.4 194 30.4
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 7.2e-16 88.6 150 34.0
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.2e-15 87.8 142 38.0
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 2.1e-15 87.0 136 33.8
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 3.6e-15 86.3 154 32.5
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 6.1e-15 85.5 123 39.8
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 6.1e-15 85.5 174 32.8
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.8e-14 84.0 123 39.8
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 1.8e-14 84.0 201 30.8
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 2.6e-13 80.1 124 35.5
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 5.7e-13 79.0 175 30.3
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 7.5e-13 78.6 149 32.9
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 1.3e-12 77.8 157 31.2
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.3e-12 77.8 131 35.1
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 3.7e-12 76.3 159 32.7
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 8.2e-12 75.1 199 25.6
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 1.1e-11 74.7 91 42.9
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 5.3e-11 72.4 117 33.3
Mapoly0082s0027 Marchantia polymorpha HOM05D004173 ORTHO05D004885 1.2e-10 71.2 169 32.5
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 3.5e-10 69.7 153 31.4
CBR_g24287 Chara braunii HOM05D004173 ORTHO05D004885 5.9e-10 68.9 97 35.1
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 5.9e-10 68.9 121 33.9
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 6.5e-09 65.5 168 27.4
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 1.1e-08 64.7 149 30.9
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 3.0e-06 56.6 97 28.9


User provided reference genes

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