Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb215320 Zea mays HOM05D006434 ORTHO05D008069 8.0e-161 570.5 307 100.0
Os03g0736400 Oryza sativa ssp. japonica HOM05D006434 ORTHO05D008069 3.2e-117 425.6 318 77.4
ATR0665G567 Amborella trichopoda HOM05D006434 ORTHO05D008069 2.2e-86 323.2 261 64.0
Cfa007492 Carpinus fangiana HOM05D006434 ORTHO05D008069 8.1e-81 304.7 262 60.7
Dinv35002 Davidia involucrata HOM05D006434 ORTHO05D008069 9.0e-80 301.2 290 56.2
vmacro05779 Vaccinium macrocarpon HOM05D006434 ORTHO05D008069 1.2e-79 300.8 282 58.2
TAR629G3263 Trochodendron aralioides HOM05D006434 ORTHO05D008069 1.5e-79 300.4 262 60.3
Eucgr.I01896 Eucalyptus grandis HOM05D006434 ORTHO05D008069 1.0e-78 297.7 298 54.0
Nn1g08819 Nelumbo nucifera HOM05D006434 ORTHO05D008069 1.0e-78 297.7 284 56.3
CDE02G1577 Ceratophyllum demersum HOM05D006434 ORTHO05D008069 1.3e-78 297.4 262 59.5
MD09G1042700 Malus domestica HOM05D006434 ORTHO05D008069 2.2e-78 296.6 319 53.0
COL.COLO4_36989 Corchorus olitorius HOM05D006434 ORTHO05D008069 2.9e-78 296.2 262 59.5
CsaV3_5G037720 Cucumis sativus L. HOM05D006434 ORTHO05D008069 2.9e-78 296.2 261 59.4
Sabra16G0229200 Salix brachista HOM05D006434 ORTHO05D008069 4.9e-78 295.4 265 57.4
GSVIVG01032566001 Vitis vinifera HOM05D006434 ORTHO05D008069 6.5e-78 295.0 262 59.5
Ciclev10012231m.g Citrus clementina HOM05D006434 ORTHO05D008069 1.4e-77 293.9 262 58.8
MELO3C021484.2 Cucumis melo HOM05D006434 ORTHO05D008069 1.4e-77 293.9 264 59.1
Sed0011674 Sechium edule HOM05D006434 ORTHO05D008069 1.4e-77 293.9 265 59.2
SGA_v2.0_scaffold205G41750 Striga asiatica HOM05D006434 ORTHO05D008069 1.4e-77 293.9 264 56.8
QL02p079411 Quercus lobata HOM05D006434 ORTHO05D008069 1.9e-77 293.5 264 58.0
Potri.001G349800 Populus trichocarpa HOM05D006434 ORTHO05D008069 2.5e-77 293.1 265 57.0
Cc07_g02850 Coffea canephora HOM05D006434 ORTHO05D008069 3.2e-77 292.7 263 59.3
PGR142G2438 Punica granatum HOM05D006434 ORTHO05D008069 3.2e-77 292.7 262 58.4
Hma1.2p1_0136F.1_g062090 Hydrangea macrophylla HOM05D006434 ORTHO05D008069 7.1e-77 291.6 261 57.9
Rhsim10G0029400 Rhododendron simsii HOM05D006434 ORTHO05D008069 9.3e-77 291.2 262 59.9
CSS0004781 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.6e-76 290.4 262 59.2
CAN.G1128.11 Capsicum annuum HOM05D006434 ORTHO05D008069 2.1e-76 290.0 284 55.3
CSS0040499 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 2.7e-76 289.7 273 57.1
Atru.chr8.2465 Acer truncatum HOM05D006434 ORTHO05D008069 7.9e-76 288.1 262 57.6
Manes.15G178000 Manihot esculenta HOM05D006434 ORTHO05D008069 1.0e-75 287.7 263 57.0
Actinidia06053 Actinidia chinensis HOM05D006434 ORTHO05D008069 2.3e-75 286.6 289 52.6
Duzib264G0249 Durio zibethinus HOM05D006434 ORTHO05D008069 5.1e-75 285.4 262 55.7
PGSC0003DMG400006900 Solanum tuberosum HOM05D006434 ORTHO05D008069 6.7e-75 285.0 284 54.6
CANSAT64G2331 Cannabis sativa HOM05D006434 ORTHO05D008069 8.7e-75 284.6 262 55.3
FvH4_6g49670 Fragaria vesca HOM05D006434 ORTHO05D008069 1.5e-74 283.9 261 59.4
FAN02G4063 Fragaria x ananassa HOM05D006434 ORTHO05D008069 1.5e-74 283.9 261 59.4
FAN14G5872 Fragaria x ananassa HOM05D006434 ORTHO05D008069 1.5e-74 283.9 261 59.4
Thecc.04G069300 Theobroma cacao HOM05D006434 ORTHO05D008069 1.5e-74 283.9 263 56.7
RcHm_v2.0_Chr2g0169691 Rosa chinensis HOM05D006434 ORTHO05D008069 1.9e-74 283.5 261 58.2
Solyc02g067540.3 Solanum lycopersicum HOM05D006434 ORTHO05D008069 1.9e-74 283.5 287 54.0
Sopen02g016670 Solanum pennellii HOM05D006434 ORTHO05D008069 1.9e-74 283.5 287 54.0
Medtr6g009400 Medicago truncatula HOM05D006434 ORTHO05D008069 2.5e-74 283.1 263 56.7
Nitab4.5_0001727g0150 Nicotiana tabacum HOM05D006434 ORTHO05D008069 2.5e-74 283.1 284 54.6
Peaxi162Scf00059g00128 Petunia axillaris HOM05D006434 ORTHO05D008069 2.5e-74 283.1 261 57.5
HPP92_023566 Vanilla planifolia HOM05D006434 ORTHO05D008069 4.3e-74 282.3 260 57.3
Aqoxy3G00846 Aquilegia oxysepala HOM05D006434 ORTHO05D008069 5.7e-74 282.0 264 57.6
Gohir.A07G216800 Gossypium hirsutum HOM05D006434 ORTHO05D008069 5.7e-74 282.0 262 55.7
Gohir.D07G223600 Gossypium hirsutum HOM05D006434 ORTHO05D008069 5.7e-74 282.0 262 57.6
Gorai.001G257900 Gossypium raimondii HOM05D006434 ORTHO05D008069 7.4e-74 281.6 262 56.1
DCAR_006717 Daucus carota HOM05D006434 ORTHO05D008069 9.6e-74 281.2 227 63.0
Sc10g0004040 Simmondsia chinensis HOM05D006434 ORTHO05D008069 9.6e-74 281.2 261 55.6
TPR.G32608 Trifolium pratense HOM05D006434 ORTHO05D008069 1.3e-73 280.8 262 55.7
AUR62018326 Chenopodium quinoa HOM05D006434 ORTHO05D008069 1.6e-73 280.4 262 56.5
Migut.H00876 Erythranthe guttata HOM05D006434 ORTHO05D008069 1.6e-73 280.4 262 57.3
FAN05G1688 Fragaria x ananassa HOM05D006434 ORTHO05D008069 1.6e-73 280.4 261 58.6
TWI56G0494 Tripterygium wilfordii HOM05D006434 ORTHO05D008069 1.6e-73 280.4 263 55.5
HanXRQChr15g0488521 Helianthus annuus HOM05D006434 ORTHO05D008069 1.8e-72 276.9 259 57.1
Lj2g0012157 Lotus japonicus HOM05D006434 ORTHO05D008069 2.4e-72 276.6 262 55.0
AL5G18090 Arabidopsis lyrata HOM05D006434 ORTHO05D008069 5.3e-72 275.4 288 52.8
Lalb_Chr21g0319131 Lupinus albus HOM05D006434 ORTHO05D008069 9.0e-72 274.6 203 66.0
VMungo0464G0451 Vigna mungo HOM05D006434 ORTHO05D008069 9.0e-72 274.6 209 65.1
Carub.0005s0699 Capsella rubella HOM05D006434 ORTHO05D008069 1.2e-71 274.2 288 52.8
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 2.6e-71 273.1 287 52.6
unitig_744.g24344 Utricularia gibba HOM05D006434 ORTHO05D008069 3.4e-71 272.7 262 56.5
MSTRG.23964 Avicennia marina HOM05D006434 ORTHO05D008069 7.6e-71 271.6 259 56.8
Glyma.13G066900 Glycine max HOM05D006434 ORTHO05D008069 1.3e-70 270.8 262 57.6
PSO161G0076 Papaver somniferum HOM05D006434 ORTHO05D008069 1.3e-70 270.8 262 55.7
Psat1g076480 Pisum sativum HOM05D006434 ORTHO05D008069 2.9e-70 269.6 207 65.7
Lsat_1_v5_gn_4_180280 Lactuca sativa HOM05D006434 ORTHO05D008069 5.0e-70 268.9 295 50.8
Phvul.004G023900 Phaseolus vulgaris HOM05D006434 ORTHO05D008069 5.0e-70 268.9 262 54.6
CiPaw.03G032300 Carya illinoinensis HOM05D006434 ORTHO05D008069 8.5e-70 268.1 275 54.9
Oeu022866.3 Olea europaea HOM05D006434 ORTHO05D008069 8.5e-70 268.1 300 50.3
CARHR292500 Cardamine hirsuta HOM05D006434 ORTHO05D008069 1.9e-69 266.9 208 63.0
PSO478G2838 Papaver somniferum HOM05D006434 ORTHO05D008069 1.9e-69 266.9 205 65.4
BcaC06g33735 Brassica carinata HOM05D006434 ORTHO05D008069 3.2e-69 266.2 295 50.5
Thhalv10004634m.g Eutrema salsugineum HOM05D006434 ORTHO05D008069 4.2e-69 265.8 210 62.4
Sp2g17230 Schrenkiella parvula HOM05D006434 ORTHO05D008069 4.2e-69 265.8 210 62.9
EL10Ac2g02902 Beta vulgaris HOM05D006434 ORTHO05D008069 1.6e-68 263.8 316 49.7
Aa31LG2G4610 Aethionema arabicum HOM05D006434 ORTHO05D008069 2.7e-68 263.1 265 52.8
Prupe.3G275100 Prunus persica HOM05D006434 ORTHO05D008069 2.7e-68 263.1 219 60.7
THA.LOC104823923 Tarenaya hassleriana HOM05D006434 ORTHO05D008069 3.6e-68 262.7 258 54.7
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 6.1e-68 261.9 219 60.7
C07p37520 Brassica napus HOM05D006434 ORTHO05D008069 1.0e-67 261.2 299 49.8
AUR62030560 Chenopodium quinoa HOM05D006434 ORTHO05D008069 1.0e-67 261.2 273 57.1
BolC7t44265H Brassica oleracea HOM05D006434 ORTHO05D008069 3.9e-67 259.2 299 49.5
A06p40510 Brassica napus HOM05D006434 ORTHO05D008069 6.7e-67 258.5 299 49.8
BraA06t26970Z Brassica rapa HOM05D006434 ORTHO05D008069 6.7e-67 258.5 299 49.8
arahy.Tifrunner.gnm1.ann1.X2C98S Arachis hypogaea HOM05D006434 ORTHO05D008069 8.7e-67 258.1 298 50.3
arahy.Tifrunner.gnm1.ann1.ICRE53 Arachis hypogaea HOM05D006434 ORTHO05D008069 9.7e-66 254.6 301 49.8
Glyma.19G017500 Glycine max HOM05D006434 ORTHO05D008069 2.2e-65 253.4 197 64.0
FAN09G0258 Fragaria x ananassa HOM05D006434 ORTHO05D008069 3.7e-65 252.7 288 52.1
AT3G28460 Arabidopsis thaliana HOM05D006434 ORTHO05D008069 1.8e-64 250.4 221 59.3
Haze_14607 Corylus avellana HOM05D006434 ORTHO05D008069 9.1e-64 248.1 220 59.1
CSS0001127 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 2.6e-63 246.5 218 58.7
Cpa.g.sc14.62 Carica papaya HOM05D006434 ORTHO05D008069 3.6e-60 236.1 157 72.6
CSS0033350 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 4.6e-60 235.7 210 58.6
SMO171G0075 Selaginella moellendorffii HOM05D006434 ORTHO05D008069 2.0e-58 230.3 206 56.3
Nitab4.5_0003431g0070 Nicotiana tabacum HOM05D006434 ORTHO05D008069 3.3e-58 229.6 158 69.6
Lj7A404T37 Lonicera japonica HOM05D006434 ORTHO05D008069 6.3e-57 225.3 202 58.4
Pp3c7_630 Physcomitrium patens HOM05D006434 ORTHO05D008069 1.1e-56 224.6 222 55.9
AagrBONN_evm.TU.Sc2ySwM_344.3988 Anthoceros agrestis HOM05D006434 ORTHO05D008069 6.9e-56 221.9 196 57.1
Ca_04243_v3 Cicer arietinum L. HOM05D006434 ORTHO05D008069 2.6e-55 219.9 223 52.9
MBI01_g13068_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 3.2e-53 213.0 217 53.9
SalBow1G5247 Salvia bowleyana HOM05D006434 ORTHO05D008069 1.6e-52 210.7 297 43.4
CSS0043817 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 2.2e-49 200.3 139 69.8
Mapoly0140s0031 Marchantia polymorpha HOM05D006434 ORTHO05D008069 6.3e-49 198.7 208 52.9
Hund13291 Selenicereus undatus HOM05D006434 ORTHO05D008069 1.1e-45 188.0 198 53.0
CBR_g31858 Chara braunii HOM05D006434 ORTHO05D008069 1.2e-44 184.5 241 45.2
Cre13.g566300 Chlamydomonas reinhardtii HOM05D006434 ORTHO05D008069 1.5e-34 151.0 202 41.1
PRCOL_00006620 Prasinoderma coloniale HOM05D006434 ORTHO05D008069 2.0e-34 150.6 227 37.4
SEGI_25544 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 6.3e-33 145.6 162 48.8
MCO03G139 Micromonas commoda HOM05D006434 ORTHO05D008069 1.2e-28 131.3 121 52.1
SEGI_38692 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 2.1e-28 130.6 123 54.5
Sopen01g021310 Solanum pennellii HOM05D006434 ORTHO05D008069 1.8e-24 117.5 90 65.6
Solyc01g057060.1 Solanum lycopersicum HOM05D006434 ORTHO05D008069 4.5e-23 112.8 96 59.4
MD17G1044100 Malus domestica HOM05D006434 ORTHO05D008069 2.1e-20 104.0 60 83.3
TAR371G0222 Trochodendron aralioides HOM05D006434 ORTHO05D008069 2.0e-18 97.4 68 73.5
MBI01_g13070_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 9.2e-16 88.6 78 59.0
Lsat_1_v5_gn_7_34121 Lactuca sativa HOM05D006434 ORTHO05D008069 1.7e-06 57.8 48 56.2


User provided reference genes

Program Settings