Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb215210 Zea mays HOM05D008163 ORTHO05D010305 2.3e-54 215.3 110 100.0
Zm00001eb056700 Zea mays HOM05D008163 ORTHO05D010305 1.1e-51 206.5 109 93.6
Os12g0517200 Oryza sativa ssp. japonica HOM05D008163 ORTHO05D010305 2.3e-38 162.2 106 75.5
MD15G1374400 Malus domestica HOM05D008163 ORTHO05D010305 2.2e-28 129.0 107 61.7
MD12G1044600 Malus domestica HOM05D008163 ORTHO05D010305 6.4e-28 127.5 107 60.7
Prupe.7G030100 Prunus persica HOM05D008163 ORTHO05D010305 8.3e-28 127.1 105 62.9
Prupe.4G282300 Prunus persica HOM05D008163 ORTHO05D010305 2.4e-27 125.6 105 61.9
Hma1.2p1_0136F.1_g062003 Hydrangea macrophylla HOM05D008163 ORTHO05D010305 3.5e-26 121.7 104 61.5
Hund21444 Selenicereus undatus HOM05D008163 ORTHO05D010305 4.6e-26 121.3 101 63.4
AT3G22300 Arabidopsis thaliana HOM05D008163 ORTHO05D010305 2.3e-25 119.0 101 57.4
CARHR098200 Cardamine hirsuta HOM05D008163 ORTHO05D010305 3.0e-25 118.6 101 59.4
Aa31LG8G8870 Aethionema arabicum HOM05D008163 ORTHO05D010305 3.9e-25 118.2 100 59.0
AL3G36570 Arabidopsis lyrata HOM05D008163 ORTHO05D010305 6.6e-25 117.5 101 57.4
SalBow1G5351 Salvia bowleyana HOM05D008163 ORTHO05D010305 1.5e-24 116.3 99 61.6
SalBow1G7817 Salvia bowleyana HOM05D008163 ORTHO05D010305 1.5e-24 116.3 99 61.6
Thhalv10021368m.g Eutrema salsugineum HOM05D008163 ORTHO05D010305 1.9e-24 115.9 99 57.6
Carub.0003s2247 Capsella rubella HOM05D008163 ORTHO05D010305 2.5e-24 115.5 103 55.3
Sp3g20090 Schrenkiella parvula HOM05D008163 ORTHO05D010305 1.2e-23 113.2 99 55.6
Potri.007G072900 Populus trichocarpa HOM05D008163 ORTHO05D010305 1.6e-23 112.8 107 53.3
Sabra15G0022500 Salix brachista HOM05D008163 ORTHO05D010305 1.6e-23 112.8 112 52.7
BraA03t13418Z Brassica rapa HOM05D008163 ORTHO05D010305 2.8e-23 112.1 99 56.6
A03p42710 Brassica napus HOM05D008163 ORTHO05D010305 3.6e-23 111.7 99 55.6
Sabra07G0061500 Salix brachista HOM05D008163 ORTHO05D010305 3.6e-23 111.7 107 54.2
RcHm_v2.0_Chr1g0321141 Rosa chinensis HOM05D008163 ORTHO05D010305 4.7e-23 111.3 106 54.7
RcHm_v2.0_Chr2g0149911 Rosa chinensis HOM05D008163 ORTHO05D010305 4.7e-23 111.3 106 55.7
BcaC01g03452 Brassica carinata HOM05D008163 ORTHO05D010305 6.2e-23 110.9 99 54.5
C03p52430 Brassica napus HOM05D008163 ORTHO05D010305 6.2e-23 110.9 99 54.5
BolC3t17513H Brassica oleracea HOM05D008163 ORTHO05D010305 6.2e-23 110.9 99 54.5
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 8.1e-23 110.5 104 52.9
SHI03043 Sapria himalayana HOM05D008163 ORTHO05D010305 8.1e-23 110.5 104 51.9
BcaB06g26334 Brassica carinata HOM05D008163 ORTHO05D010305 1.8e-22 109.4 99 53.5
A05p26470 Brassica napus HOM05D008163 ORTHO05D010305 1.8e-22 109.4 99 53.5
BraA05t21520Z Brassica rapa HOM05D008163 ORTHO05D010305 1.8e-22 109.4 99 53.5
FAN03G0237 Fragaria x ananassa HOM05D008163 ORTHO05D010305 5.2e-22 107.8 106 53.8
FAN06G4466 Fragaria x ananassa HOM05D008163 ORTHO05D010305 5.2e-22 107.8 106 53.8
BcaC05g28083 Brassica carinata HOM05D008163 ORTHO05D010305 6.8e-22 107.5 99 52.5
C05p41060 Brassica napus HOM05D008163 ORTHO05D010305 6.8e-22 107.5 99 52.5
BolC5t32848H Brassica oleracea HOM05D008163 ORTHO05D010305 6.8e-22 107.5 99 52.5
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 1.5e-21 106.3 103 52.4
Manes.09G036100 Manihot esculenta HOM05D008163 ORTHO05D010305 1.5e-21 106.3 112 50.9
FvH4_7g02510 Fragaria vesca HOM05D008163 ORTHO05D010305 2.0e-21 105.9 106 52.8
Solyc11g063600.3 Solanum lycopersicum HOM05D008163 ORTHO05D010305 5.8e-21 104.4 104 56.7
SEGI_07019 Sequoiadendron giganteum HOM05D008163 ORTHO05D010305 7.6e-21 104.0 106 52.8
EL10Ac8g20156 Beta vulgaris HOM05D008163 ORTHO05D010305 1.3e-20 103.2 92 58.7
AUR62012772 Chenopodium quinoa HOM05D008163 ORTHO05D010305 2.9e-20 102.1 100 56.0
AUR62021886 Chenopodium quinoa HOM05D008163 ORTHO05D010305 2.9e-20 102.1 100 56.0
Actinidia29350 Actinidia chinensis HOM05D008163 ORTHO05D010305 1.9e-19 99.4 79 63.3
Ah.14g087810 Amaranthus hybridus HOM05D000967 ORTHO05D000796 1.9e-19 99.4 100 49.0
Nn1g09991 Nelumbo nucifera HOM05D008163 ORTHO05D010305 2.4e-19 99.0 80 63.8
Nn1g10091 Nelumbo nucifera HOM05D008163 ORTHO05D010305 2.4e-19 99.0 80 63.8
TPR.G20554 Trifolium pratense HOM05D008163 ORTHO05D010305 5.4e-19 97.8 83 60.2
Prupe.7G029400 Prunus persica HOM05D008163 ORTHO05D010305 7.1e-19 97.4 71 66.2
Rhsim06G0223600 Rhododendron simsii HOM05D000504 ORTHO05D000403 1.2e-18 96.7 76 61.8
AUR62036216 Chenopodium quinoa HOM05D008163 ORTHO05D010305 1.6e-18 96.3 100 54.0
DCAR_027582 Daucus carota HOM05D008163 ORTHO05D010305 2.7e-18 95.5 99 50.5
Lalb_Chr00c21g0405831 Lupinus albus HOM05D008163 ORTHO05D010305 4.6e-18 94.7 80 61.2
PSO017G7110 Papaver somniferum HOM05D008163 ORTHO05D010305 6.0e-18 94.4 76 57.9
PSO170G4613 Papaver somniferum HOM05D008163 ORTHO05D010305 6.0e-18 94.4 76 57.9
CSS0047821 Camellia sinensis var. sinensis HOM05D008163 ORTHO05D010305 7.8e-18 94.0 84 59.5
CSS0033547 Camellia sinensis var. sinensis HOM05D008163 ORTHO05D010305 8.7e-17 90.5 84 58.3
Nitab4.5_0000592g0150 Nicotiana tabacum HOM05D008163 ORTHO05D010305 2.8e-15 85.5 78 57.7
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 3.6e-15 85.1 80 55.0
Nitab4.5_0001127g0310 Nicotiana tabacum HOM05D008163 ORTHO05D010305 8.1e-15 84.0 97 49.5
Nitab4.5_0000172g1360 Nicotiana tabacum HOM05D008163 ORTHO05D010305 3.1e-14 82.0 76 57.9
AagrBONN_evm.TU.Sc2ySwM_368.972 Anthoceros agrestis HOM05D008163 ORTHO05D010305 2.6e-13 79.0 102 41.2
Pp3c3_3090 Physcomitrium patens HOM05D008163 ORTHO05D010305 9.9e-13 77.0 104 40.4
MD07G1062900 Malus domestica HOM05D008163 ORTHO05D010305 2.2e-12 75.9 74 52.7
Glyma.17G185500 Glycine max HOM05D008163 ORTHO05D010305 8.4e-12 73.9 61 60.7
SMO234G0032 Selaginella moellendorffii HOM05D008163 ORTHO05D010305 1.1e-11 73.6 97 39.2
SMO196G0141 Selaginella moellendorffii HOM05D008163 ORTHO05D010305 3.2e-11 72.0 80 42.5
Nitab4.5_0001702g0010 Nicotiana tabacum HOM05D011509 ORTHO05D010305 2.8e-07 58.9 51 60.8
FAN10G0940 Fragaria x ananassa HOM05D008163 ORTHO05D010305 8.1e-07 57.4 51 54.9


User provided reference genes

Program Settings