Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 7.5e-169 597.0 291 100.0
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 4.3e-140 501.5 289 85.5
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 7.4e-108 394.4 284 66.9
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.3e-107 393.7 280 68.2
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.1e-106 390.6 282 67.4
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 2.6e-105 386.0 284 65.1
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 2.6e-105 386.0 287 67.6
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 2.6e-105 386.0 281 66.9
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 4.5e-105 385.2 279 64.5
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 3.8e-104 382.1 284 65.1
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 3.8e-104 382.1 287 67.2
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 1.4e-103 380.2 283 66.8
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 4.2e-103 378.6 284 65.1
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 7.2e-103 377.9 294 62.9
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 9.4e-103 377.5 280 64.6
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 9.4e-103 377.5 279 65.2
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 1.2e-102 377.1 286 64.3
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 1.6e-102 376.7 278 64.4
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 2.7e-102 375.9 279 64.5
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 2.7e-102 375.9 281 65.5
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 2.7e-102 375.9 277 66.8
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 3.6e-102 375.6 276 64.1
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 4.7e-102 375.2 281 65.5
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 4.7e-102 375.2 281 65.5
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 6.1e-102 374.8 282 64.5
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 6.1e-102 374.8 284 66.5
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.0e-101 374.0 279 65.2
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.0e-101 374.0 277 63.2
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 1.4e-101 373.6 281 65.5
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 1.8e-101 373.2 279 63.8
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.8e-101 373.2 281 64.1
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 2.3e-101 372.9 294 62.2
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 3.0e-101 372.5 282 66.0
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 3.9e-101 372.1 282 63.8
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 1.1e-100 370.5 279 65.6
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 1.1e-100 370.5 282 64.2
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.5e-100 370.2 284 64.8
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 2.0e-100 369.8 282 63.1
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 2.0e-100 369.8 281 63.3
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 3.3e-100 369.0 280 63.2
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 3.3e-100 369.0 280 63.2
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 3.3e-100 369.0 287 64.8
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 3.3e-100 369.0 288 64.2
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 4.4e-100 368.6 294 63.6
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 4.4e-100 368.6 281 64.1
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 7.4e-100 367.9 278 63.7
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 9.7e-100 367.5 277 63.5
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 9.7e-100 367.5 280 62.9
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.3e-99 367.1 280 63.2
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 1.3e-99 367.1 278 63.7
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 2.2e-99 366.3 279 62.0
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 3.7e-99 365.5 278 63.3
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 8.2e-99 364.4 281 62.3
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 1.1e-98 364.0 285 63.2
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 2.4e-98 362.8 299 62.2
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 2.4e-98 362.8 281 61.9
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 3.1e-98 362.5 281 61.2
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 3.1e-98 362.5 279 61.3
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 4.1e-98 362.1 277 63.2
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 4.1e-98 362.1 278 62.2
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 5.3e-98 361.7 278 63.7
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 5.3e-98 361.7 283 61.1
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 5.3e-98 361.7 283 61.1
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 5.3e-98 361.7 283 61.1
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 5.3e-98 361.7 280 62.5
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 9.1e-98 360.9 278 61.9
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 9.1e-98 360.9 280 61.8
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 9.1e-98 360.9 278 62.2
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 9.1e-98 360.9 281 61.6
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 9.1e-98 360.9 277 63.9
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 1.5e-97 360.1 242 70.7
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 2.6e-97 359.4 276 62.3
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 3.5e-97 359.0 278 61.2
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 5.9e-97 358.2 278 60.1
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 7.7e-97 357.8 278 61.9
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 7.7e-97 357.8 280 61.8
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 1.0e-96 357.5 280 62.1
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 1.3e-96 357.1 280 62.1
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 1.3e-96 357.1 278 60.4
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 2.2e-96 356.3 280 61.8
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 2.9e-96 355.9 281 61.6
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 3.8e-96 355.5 280 61.8
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 3.8e-96 355.5 284 61.3
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 6.5e-96 354.8 286 60.5
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 6.5e-96 354.8 318 57.9
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 8.5e-96 354.4 281 61.2
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 8.5e-96 354.4 322 56.8
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 1.9e-95 353.2 280 60.7
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 3.2e-95 352.4 280 61.4
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 7.2e-95 351.3 278 61.9
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 2.1e-94 349.7 325 57.2
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 2.1e-94 349.7 325 57.2
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 8.0e-94 347.8 280 60.0
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 8.0e-94 347.8 282 58.9
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 8.0e-94 347.8 277 61.0
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 3.0e-93 345.9 296 58.4
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 1.8e-90 336.7 290 57.9
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 4.1e-90 335.5 277 60.6
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 9.1e-90 334.3 278 60.1
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 9.1e-90 334.3 249 65.5
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 1.2e-89 334.0 253 64.8
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 5.9e-89 331.6 257 65.8
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 7.7e-89 331.3 249 64.7
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 1.7e-88 330.1 242 67.4
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 9.4e-87 324.3 231 67.1
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 1.2e-86 323.9 248 62.9
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.1e-86 323.2 277 57.8
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.3e-83 313.9 281 57.7
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 2.2e-83 313.2 254 62.6
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 2.8e-83 312.8 283 56.5
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 8.3e-83 311.2 282 56.7
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 9.1e-82 307.8 276 53.6
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 5.5e-79 298.5 250 58.4
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 1.0e-77 294.3 237 62.4
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 1.0e-77 294.3 279 54.5
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 4.4e-76 288.9 210 66.7
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 2.3e-72 276.6 278 51.4
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 3.0e-69 266.2 247 55.1
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 3.0e-69 266.2 281 50.2
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 1.9e-63 246.9 173 68.8
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 3.7e-59 232.6 182 63.2
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 5.0e-56 222.2 220 55.0
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 1.1e-50 204.5 266 44.0
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 3.1e-45 186.4 276 38.8
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 1.1e-42 177.9 290 38.6
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.2e-35 153.7 149 54.4
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 5.4e-34 149.1 122 59.0
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 7.3e-31 138.7 87 72.4
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 2.8e-30 136.7 106 58.5
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.8e-29 134.0 273 31.5
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 4.0e-29 132.9 89 68.5
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 2.6e-28 130.2 87 69.0
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 6.4e-27 125.6 392 27.0
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 3.5e-25 119.8 74 74.3
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 3.5e-25 119.8 96 61.5
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 5.6e-23 112.5 170 41.2
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 1.5e-20 104.4 77 68.8
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.9e-18 97.4 68 66.2
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 2.5e-15 87.0 188 31.9
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 2.1e-14 84.0 62 58.1
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 2.4e-13 80.5 96 43.8
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 5.3e-13 79.3 71 54.9
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 1.5e-12 77.8 68 55.9
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 4.5e-12 76.3 47 72.3
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 4.5e-12 76.3 47 70.2
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 7.6e-12 75.5 81 46.9
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 7.6e-12 75.5 47 72.3
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 7.6e-12 75.5 47 72.3
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 2.1e-09 67.4 45 68.9
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 3.5e-09 66.6 37 78.4
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 4.6e-09 66.2 84 45.2
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 1.0e-08 65.1 36 80.6
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 3.3e-07 60.1 82 41.5
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 1.3e-06 58.2 78 43.6
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 1.3e-06 58.2 78 43.6


User provided reference genes

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