Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 1.2e-126 456.4 228 100.0
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 6.6e-120 434.1 226 94.7
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 6.2e-118 427.6 226 93.4
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 1.1e-111 406.8 227 87.2
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 2.1e-110 402.5 227 84.6
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 2.8e-110 402.1 227 84.6
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 2.8e-110 402.1 227 85.0
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 4.8e-110 401.4 227 86.3
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 8.1e-110 400.6 227 83.7
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 1.8e-109 399.4 227 84.6
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 2.4e-109 399.1 227 84.1
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 3.1e-109 398.7 227 84.6
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 3.1e-109 398.7 227 85.0
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 3.1e-109 398.7 227 83.7
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 3.1e-109 398.7 227 84.1
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 4.0e-109 398.3 227 83.7
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 4.0e-109 398.3 227 84.6
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 5.3e-109 397.9 227 84.6
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 6.9e-109 397.5 227 84.1
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 1.2e-108 396.7 227 83.7
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 1.2e-108 396.7 227 83.7
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 1.5e-108 396.4 227 83.7
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 1.5e-108 396.4 221 86.9
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.0e-108 396.0 226 84.1
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 2.0e-108 396.0 226 84.1
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 2.6e-108 395.6 227 83.3
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 3.4e-108 395.2 227 82.4
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 3.4e-108 395.2 227 82.8
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 4.4e-108 394.8 227 83.7
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 7.6e-108 394.0 226 83.6
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 7.6e-108 394.0 227 82.4
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 9.9e-108 393.7 227 82.4
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 9.9e-108 393.7 227 82.8
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 1.3e-107 393.3 227 82.4
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 1.3e-107 393.3 227 82.4
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 1.7e-107 392.9 227 82.4
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 1.7e-107 392.9 227 81.9
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 2.2e-107 392.5 227 81.9
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 2.2e-107 392.5 227 81.9
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 2.2e-107 392.5 227 83.7
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 2.2e-107 392.5 227 81.9
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 2.2e-107 392.5 227 82.4
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.9e-107 392.1 228 83.3
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 2.9e-107 392.1 227 81.9
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 2.9e-107 392.1 227 82.8
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 3.8e-107 391.7 227 82.8
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 4.9e-107 391.3 227 81.9
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 8.4e-107 390.6 227 83.3
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.1e-106 390.2 227 81.9
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 1.4e-106 389.8 227 81.5
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 1.4e-106 389.8 227 82.4
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 1.9e-106 389.4 227 81.5
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 1.9e-106 389.4 227 81.1
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 2.4e-106 389.0 227 81.9
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 2.4e-106 389.0 227 81.9
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 3.2e-106 388.7 227 81.9
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 3.2e-106 388.7 227 80.6
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 4.2e-106 388.3 227 80.2
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 4.2e-106 388.3 227 80.6
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 4.2e-106 388.3 227 80.6
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 9.3e-106 387.1 227 80.2
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 9.3e-106 387.1 227 80.2
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 1.6e-105 386.3 227 81.1
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 1.6e-105 386.3 227 81.9
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 2.1e-105 386.0 227 81.5
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 6.0e-105 384.4 227 81.1
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 1.0e-104 383.6 227 81.1
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 2.3e-104 382.5 227 80.6
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 3.9e-104 381.7 227 80.2
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 6.6e-104 380.9 227 79.3
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 6.6e-104 380.9 227 80.2
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 8.7e-104 380.6 227 81.1
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 1.5e-103 379.8 227 78.4
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 3.3e-103 378.6 227 79.7
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 4.3e-103 378.3 227 79.7
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 4.3e-103 378.3 227 79.7
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 4.3e-103 378.3 227 79.7
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 4.3e-103 378.3 227 79.7
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 4.3e-103 378.3 227 79.7
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 7.3e-103 377.5 227 79.3
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 1.6e-102 376.3 227 78.0
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 2.8e-102 375.6 225 80.0
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 4.8e-102 374.8 227 78.0
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 4.8e-102 374.8 227 77.5
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 4.8e-102 374.8 227 80.6
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 6.2e-102 374.4 229 79.5
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 1.4e-101 373.2 229 79.0
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 2.4e-101 372.5 227 77.5
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 3.1e-101 372.1 225 78.2
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 5.3e-101 371.3 227 78.0
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 6.9e-101 370.9 236 76.7
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 1.2e-100 370.2 227 77.1
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 1.5e-100 369.8 227 77.1
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 2.6e-100 369.0 227 79.7
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 1.7e-99 366.3 227 76.7
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 1.7e-99 366.3 227 80.2
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 1.1e-98 363.6 254 71.3
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 4.2e-98 361.7 227 76.2
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 1.3e-96 356.7 227 78.9
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 2.5e-95 352.4 228 72.8
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 1.6e-94 349.7 202 83.2
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 2.8e-94 349.0 201 83.1
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 1.4e-93 346.7 202 82.2
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.8e-93 346.3 226 70.8
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.8e-93 346.3 226 70.8
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 2.0e-92 342.8 201 82.6
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 2.2e-91 339.3 191 86.4
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 2.9e-91 339.0 226 70.4
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 3.8e-91 338.6 210 77.6
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 6.4e-91 337.8 190 86.3
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 8.4e-91 337.4 187 87.2
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 1.3e-88 330.1 193 82.9
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 7.4e-87 324.3 191 81.7
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 9.6e-87 323.9 231 70.6
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 1.3e-86 323.6 187 83.4
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 3.7e-86 322.0 226 65.9
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 8.2e-86 320.9 200 78.0
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 1.8e-85 319.7 185 83.8
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 2.4e-85 319.3 227 69.6
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 3.1e-85 318.9 234 69.2
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 6.1e-81 304.7 227 67.4
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 3.0e-80 302.4 185 78.4
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 1.4e-77 293.5 226 64.2
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 6.5e-75 284.6 164 83.5
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 2.5e-74 282.7 159 83.6
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 1.1e-69 267.3 355 43.9
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.5e-68 263.5 159 77.4
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.2e-60 237.3 159 67.3
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 5.7e-55 218.4 190 59.5
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 3.5e-52 209.1 120 80.0
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 8.5e-51 204.5 131 71.0
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.5e-31 140.6 135 51.9
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 8.9e-24 114.8 69 79.7
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 2.4e-21 106.7 62 74.2
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 2.1e-17 93.6 152 38.8
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 3.1e-16 89.7 122 48.4
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.4e-13 80.1 39 87.2
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 4.1e-13 79.3 69 59.4
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 3.0e-11 73.2 52 63.5
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 5.1e-11 72.4 67 55.2
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 9.5e-10 68.2 49 67.3


User provided reference genes

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