Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 1.3e-294 1015.8 541 100.0
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 5.6e-226 787.7 549 82.1
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 5.4e-144 515.4 567 57.8
Zm00001eb117330 Zea mays HOM05D004882 ORTHO05D005551 4.9e-129 465.7 300 89.7
Zm00001eb053000 Zea mays HOM05D004882 ORTHO05D005551 1.0e-118 431.4 325 78.2
Zm00001eb090710 Zea mays HOM05D004882 ORTHO05D005551 2.3e-118 430.3 322 78.9
Zm00001eb415140 Zea mays HOM05D004882 ORTHO05D005551 1.1e-117 427.9 312 80.4
Zm00001eb138980 Zea mays HOM05D001168 ORTHO05D005551 1.6e-111 407.5 312 78.2
Zm00001eb319340 Zea mays HOM05D004882 ORTHO05D005551 3.4e-90 336.7 262 77.9
Zm00001eb145010 Zea mays HOM05D002780 ORTHO05D005551 4.2e-40 170.2 137 77.4
Zm00001eb224580 Zea mays HOM05D004882 ORTHO05D006702 2.1e-39 167.9 137 76.6
Zm00001eb224590 Zea mays HOM05D004882 ORTHO05D005551 4.7e-39 166.8 114 80.7
Zm00001eb145000 Zea mays HOM05D004882 ORTHO05D005551 2.3e-38 164.5 114 79.8
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 9.7e-37 159.1 94 84.0
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 2.2e-36 157.9 546 31.0
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 1.1e-35 155.6 595 30.3
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 5.3e-35 153.3 493 33.5
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 7.0e-35 152.9 225 46.7
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 1.3e-33 148.7 505 30.5
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 5.0e-33 146.7 567 30.0
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 5.0e-33 146.7 488 32.2
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 6.5e-33 146.4 510 31.6
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 1.1e-32 145.6 535 31.8
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 2.5e-32 144.4 559 29.9
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 3.2e-32 144.1 485 30.7
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 3.2e-32 144.1 502 31.5
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 4.2e-32 143.7 516 32.2
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 7.2e-32 142.9 218 45.0
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 9.4e-32 142.5 570 30.7
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 9.4e-32 142.5 632 28.0
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 1.2e-31 142.1 202 44.1
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 1.2e-31 142.1 440 31.1
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.6e-31 141.7 515 30.5
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 2.1e-31 141.4 677 29.0
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 4.7e-31 140.2 584 30.0
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 4.7e-31 140.2 520 31.7
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 2.3e-30 137.9 611 30.9
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 3.0e-30 137.5 486 32.3
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 4.0e-30 137.1 508 31.7
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 5.2e-30 136.7 560 28.9
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 5.2e-30 136.7 510 29.4
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 6.8e-30 136.3 632 28.6
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 8.8e-30 136.0 602 27.4
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 1.2e-29 135.6 586 30.9
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 2.0e-29 134.8 499 30.5
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.0e-29 134.8 508 31.3
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.0e-29 134.8 499 30.5
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 3.4e-29 134.0 528 31.6
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 3.4e-29 134.0 545 29.5
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 4.4e-29 133.7 643 27.2
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 5.7e-29 133.3 511 31.9
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 5.7e-29 133.3 559 30.8
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 7.5e-29 132.9 550 29.1
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 1.3e-28 132.1 558 28.9
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 2.2e-28 131.3 636 28.0
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 2.2e-28 131.3 520 30.6
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 3.7e-28 130.6 558 29.0
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 3.7e-28 130.6 512 30.3
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 6.3e-28 129.8 649 27.7
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 8.3e-28 129.4 607 27.2
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 8.3e-28 129.4 511 32.9
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 1.1e-27 129.0 648 27.5
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 1.4e-27 128.6 591 29.8
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 1.8e-27 128.3 635 29.3
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 3.1e-27 127.5 569 28.6
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 5.4e-27 126.7 447 29.1
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 7.0e-27 126.3 453 30.9
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 7.0e-27 126.3 331 33.5
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 9.1e-27 125.9 617 28.4
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 9.1e-27 125.9 441 30.2
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 9.1e-27 125.9 584 27.9
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 1.2e-26 125.6 516 27.3
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 2.0e-26 124.8 603 29.4
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 2.0e-26 124.8 510 30.4
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 2.0e-26 124.8 609 29.4
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 2.7e-26 124.4 584 28.3
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 3.5e-26 124.0 595 28.2
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 4.5e-26 123.6 541 29.9
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 5.9e-26 123.2 516 28.7
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 1.0e-25 122.5 655 26.4
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 1.3e-25 122.1 639 27.2
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 2.3e-25 121.3 347 32.3
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 2.3e-25 121.3 513 28.3
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 2.9e-25 120.9 632 28.3
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 2.9e-25 120.9 637 28.6
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 5.0e-25 120.2 518 28.4
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 5.0e-25 120.2 625 26.6
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 8.6e-25 119.4 424 29.5
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.5e-24 117.9 545 27.9
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 5.5e-24 116.7 603 28.5
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 7.2e-24 116.3 273 33.7
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 7.2e-24 116.3 492 30.5
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 9.5e-24 115.9 551 27.0
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 9.5e-24 115.9 619 27.0
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 9.5e-24 115.9 450 27.8
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 1.6e-23 115.2 588 27.6
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 2.8e-23 114.4 409 28.1
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 3.6e-23 114.0 597 27.3
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 4.7e-23 113.6 628 26.4
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 2.3e-22 111.3 620 28.2
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 3.0e-22 110.9 449 28.7
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 4.0e-22 110.5 585 27.0
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 4.0e-22 110.5 589 27.0
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 4.0e-22 110.5 589 27.0
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 6.8e-22 109.8 565 26.5
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 1.2e-21 109.0 606 26.6
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 2.0e-21 108.2 328 29.9
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 2.6e-21 107.8 623 26.3
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 3.4e-21 107.5 633 25.6
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 4.4e-21 107.1 628 25.8
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 1.7e-20 105.1 645 25.3
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 2.2e-20 104.8 197 39.1
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 8.3e-20 102.8 417 28.5
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 1.1e-19 102.4 621 25.1
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 3.1e-19 100.9 596 27.0
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 7.0e-19 99.8 480 28.1
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 1.6e-18 98.6 74 63.5
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 2.0e-18 98.2 646 24.0
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 2.7e-18 97.8 168 39.9
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 7.8e-18 96.3 424 27.8
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 1.3e-17 95.5 72 62.5
Zm00001eb205120 Zea mays HOM05D004882 ORTHO05D005551 1.1e-16 92.4 142 43.0
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 1.5e-16 92.0 463 28.1
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 1.2e-15 89.0 722 25.2
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 2.8e-15 87.8 602 25.1
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 2.6e-13 81.3 348 28.4
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 3.5e-10 70.9 548 25.2
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 1.3e-09 68.9 477 26.2
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 1.7e-09 68.6 455 25.5
Zm00001eb128270 Zea mays HOM05D004882 ORTHO05D005551 3.9e-09 67.4 82 65.9
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 1.9e-08 65.1 139 38.8
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 4.7e-07 60.5 38 68.4
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 3.1e-06 57.8 79 39.2
HPP92_019573 Vanilla planifolia HOM05D004882 ORTHO05D005551 6.8e-06 56.6 362 27.9


User provided reference genes

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