Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb213720 Zea mays HOM05D025363 ORTHO05D002422 4.5e-253 877.5 449 100.0
Os03g0776400 Oryza sativa ssp. japonica HOM05D025363 ORTHO05D002422 1.7e-119 433.7 425 60.5
Zm00001eb299440 Zea mays HOM05D025363 ORTHO05D002422 5.7e-107 392.1 222 87.8
Zm00001eb250170 Zea mays HOM05D025363 ORTHO05D002422 1.6e-85 320.9 183 86.3
Zm00001eb366630 Zea mays HOM05D000470 ORTHO05D002422 7.7e-80 302.0 171 91.8
Dinv39969 Davidia involucrata HOM05D002420 ORTHO05D002422 1.2e-24 118.6 253 33.6
CiPaw.01G036300 Carya illinoinensis HOM05D002420 ORTHO05D002422 1.6e-24 118.2 235 37.4
CiPaw.01G036200 Carya illinoinensis HOM05D002420 ORTHO05D002422 7.9e-24 115.9 214 36.0
Cfa004296 Carpinus fangiana HOM05D002420 ORTHO05D002422 1.0e-23 115.5 214 35.5
vmacro17847 Vaccinium macrocarpon HOM05D002420 ORTHO05D002422 1.7e-23 114.8 253 32.4
Lsat_1_v5_gn_4_150760 Lactuca sativa HOM05D002420 ORTHO05D002422 3.0e-23 114.0 219 36.5
Duzib147G0753 Durio zibethinus HOM05D002420 ORTHO05D002422 3.9e-23 113.6 257 36.6
CAN.G134.121 Capsicum annuum HOM05D002420 ORTHO05D002422 5.1e-23 113.2 259 30.9
EL10Ac6g14933 Beta vulgaris HOM05D002420 ORTHO05D002422 2.5e-22 110.9 317 28.7
Rhsim08G0114200 Rhododendron simsii HOM05D002420 ORTHO05D002422 2.5e-22 110.9 293 30.0
Haze_15106 Corylus avellana HOM05D002420 ORTHO05D002422 3.3e-22 110.5 214 34.6
Peaxi162Scf00515g00043 Petunia axillaris HOM05D002420 ORTHO05D002422 3.3e-22 110.5 253 32.8
QL06p045688 Quercus lobata HOM05D002420 ORTHO05D002422 4.3e-22 110.2 208 34.6
Solyc01g097610.3 Solanum lycopersicum HOM05D002420 ORTHO05D002422 1.3e-21 108.6 256 30.9
Hma1.2p1_0400F.1_g144540 Hydrangea macrophylla HOM05D002420 ORTHO05D002422 1.6e-21 108.2 222 33.8
Thecc.01G037700 Theobroma cacao HOM05D002420 ORTHO05D002422 2.8e-21 107.5 256 34.8
GSVIVG01018983001 Vitis vinifera HOM05D002420 ORTHO05D002422 2.8e-21 107.5 222 34.7
PGSC0003DMG400019444 Solanum tuberosum HOM05D002420 ORTHO05D002422 3.6e-21 107.1 253 31.6
Ciclev10025934m.g Citrus clementina HOM05D002420 ORTHO05D002422 6.2e-21 106.3 203 36.5
TAR376G1077 Trochodendron aralioides HOM05D002420 ORTHO05D002422 1.1e-20 105.5 212 32.1
Sopen01g041240 Solanum pennellii HOM05D002420 ORTHO05D002422 1.4e-20 105.1 238 31.5
DCAR_015928 Daucus carota HOM05D002420 ORTHO05D002422 1.2e-19 102.1 259 31.3
Oeu054758.1 Olea europaea HOM05D002420 ORTHO05D002422 5.8e-19 99.8 205 35.1
Oeu007441.1 Olea europaea HOM05D002420 ORTHO05D002422 1.3e-18 98.6 258 31.4
Gorai.008G068500 Gossypium raimondii HOM05D002420 ORTHO05D002422 2.9e-18 97.4 254 32.3
Aqoxy6G01076 Aquilegia oxysepala HOM05D002420 ORTHO05D002422 8.4e-18 95.9 217 31.3
Cpa.g.sc544.2 Carica papaya HOM05D002420 ORTHO05D002422 7.1e-17 92.8 211 32.2
Zm00001eb032730 Zea mays HOM05D030036 ORTHO05D030390 1.2e-16 92.0 210 35.7
Prupe.7G153000 Prunus persica HOM05D002420 ORTHO05D002422 1.6e-16 91.7 212 33.0
AUR62003166 Chenopodium quinoa HOM05D002420 ORTHO05D002422 2.1e-16 91.3 208 33.7
AUR62007985 Chenopodium quinoa HOM05D001579 ORTHO05D003470 1.3e-15 88.6 251 31.1
Eucgr.I02456 Eucalyptus grandis HOM05D002420 ORTHO05D002422 5.1e-15 86.7 302 29.8
Lj2P450T13 Lonicera japonica HOM05D002420 ORTHO05D002422 2.5e-14 84.3 176 31.2
Sed0001582 Sechium edule HOM05D002420 ORTHO05D002422 2.5e-14 84.3 206 34.5
Zm00001eb134400 Zea mays HOM05D030036 ORTHO05D030390 9.6e-14 82.4 233 32.6
Duzib147G0480 Durio zibethinus HOM05D002420 ORTHO05D002422 1.3e-13 82.0 216 29.6
Thecc.01G037600 Theobroma cacao HOM05D002420 ORTHO05D002422 1.3e-13 82.0 211 29.4
COL.COLO4_22097 Corchorus olitorius HOM05D002420 ORTHO05D002422 2.1e-13 81.3 211 28.9
Os12g0631600 Oryza sativa ssp. japonica HOM05D030036 ORTHO05D030390 2.8e-13 80.9 242 35.1
Nitab4.5_0000434g0050 Nicotiana tabacum HOM05D002420 ORTHO05D002422 3.7e-13 80.5 293 30.7
Sabra05G0102300 Salix brachista HOM05D002420 ORTHO05D002422 6.2e-13 79.7 212 31.1
Gohir.A12G065150 Gossypium hirsutum HOM05D002420 ORTHO05D002422 8.1e-13 79.3 148 38.5
SalBow8G3676 Salvia bowleyana HOM05D002420 ORTHO05D002422 8.1e-13 79.3 245 30.6
Potri.005G124500 Populus trichocarpa HOM05D002420 ORTHO05D002422 1.1e-12 79.0 225 30.2
CAN.G358.108 Capsicum annuum HOM05D002420 ORTHO05D002422 1.4e-12 78.6 276 30.8
QL06p045710 Quercus lobata HOM05D002420 ORTHO05D002422 3.1e-12 77.4 215 29.8
MSTRG.3832 Avicennia marina HOM05D002420 ORTHO05D002422 5.3e-12 76.6 227 28.6
Duzib187G1349 Durio zibethinus HOM05D002420 ORTHO05D002422 5.3e-12 76.6 233 29.2
FAN19G0041 Fragaria x ananassa HOM05D002420 ORTHO05D002422 5.3e-12 76.6 255 27.8
Nitab4.5_0001827g0080 Nicotiana tabacum HOM05D002420 ORTHO05D002422 6.9e-12 76.3 291 29.6
Potri.007G027200 Populus trichocarpa HOM05D002420 ORTHO05D002422 6.9e-12 76.3 212 30.7
Sabra07G0023700 Salix brachista HOM05D002420 ORTHO05D002422 6.9e-12 76.3 212 30.2
CSS0039427 Camellia sinensis var. sinensis HOM05D002420 ORTHO05D002422 1.2e-11 75.5 212 28.3
FAN26G2215 Fragaria x ananassa HOM05D002420 ORTHO05D002422 1.2e-11 75.5 252 27.0
Lj4C199T6 Lonicera japonica HOM05D002420 ORTHO05D002422 1.5e-11 75.1 182 31.9
FvH4_1g13480 Fragaria vesca HOM05D002420 ORTHO05D002422 2.6e-11 74.3 249 26.9
Solyc02g085440.4 Solanum lycopersicum HOM05D002420 ORTHO05D002422 5.8e-11 73.2 208 34.1
PGSC0003DMG400014891 Solanum tuberosum HOM05D002420 ORTHO05D002422 1.0e-10 72.4 208 33.7
Sopen02g030120 Solanum pennellii HOM05D002420 ORTHO05D002422 1.3e-10 72.0 208 34.1
Solyc02g062800.2 Solanum lycopersicum HOM05D002420 ORTHO05D002422 1.7e-10 71.6 180 33.9
FAN23G2135 Fragaria x ananassa HOM05D002420 ORTHO05D002422 2.2e-10 71.2 252 26.6
SGA_v2.0_scaffold47G17662 Striga asiatica HOM05D002420 ORTHO05D002422 2.9e-10 70.9 222 30.6
Peaxi162Scf00008g00373 Petunia axillaris HOM05D002420 ORTHO05D002422 3.8e-10 70.5 204 31.4
PGSC0003DMG400015473 Solanum tuberosum HOM05D002420 ORTHO05D002422 4.9e-10 70.1 180 33.3
ECA238G1939 Erigeron canadensis HOM05D002420 ORTHO05D002422 6.5e-10 69.7 213 30.5
Sopen02g013840 Solanum pennellii HOM05D002420 ORTHO05D002422 8.4e-10 69.3 180 32.8
Oeu024879.1 Olea europaea HOM05D002420 ORTHO05D002422 1.4e-09 68.6 232 28.4
Nitab4.5_0000136g0430 Nicotiana tabacum HOM05D002420 ORTHO05D002422 2.5e-09 67.8 182 31.9
Nitab4.5_0003233g0040 Nicotiana tabacum HOM05D002420 ORTHO05D002422 4.2e-09 67.0 207 30.4
ClCG07G009080 Citrullus lanatus HOM05D002420 ORTHO05D002422 5.5e-09 66.6 211 29.9
CsaV3_4G005120 Cucumis sativus L. HOM05D002420 ORTHO05D002422 4.6e-08 63.5 423 24.6
HanXRQChr14g0441221 Helianthus annuus HOM05D002420 ORTHO05D002422 7.9e-08 62.8 225 27.6
CAN.G53.20 Capsicum annuum HOM05D002420 ORTHO05D002422 1.3e-07 62.0 215 27.9
Ciclev10025746m.g Citrus clementina HOM05D002420 ORTHO05D002422 1.3e-07 62.0 218 25.2
Os05g0488100 Oryza sativa ssp. japonica HOM05D030036 ORTHO05D030390 3.0e-07 60.8 257 26.5
Migut.H02492 Erythranthe guttata HOM05D002420 ORTHO05D002422 5.1e-07 60.1 169 30.8
Zm00001eb430060 Zea mays HOM05D025363 ORTHO05D002422 2.5e-06 57.8 59 61.0


User provided reference genes

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